Wall clock time and date at job start Tue Mar 31 2020 05:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47036 * 2 1 4 4 C 1.38319 * 119.88170 * 89.99249 * 3 2 1 5 5 C 1.38016 * 120.11851 * 180.02562 * 4 3 2 6 6 C 1.39326 * 119.88114 * 0.02562 * 5 4 3 7 7 C 1.48428 * 120.11706 * 180.02562 * 6 5 4 8 8 C 1.40147 * 125.69178 * 179.97438 * 7 6 5 9 9 C 1.37553 * 107.51298 * 180.02562 * 8 7 6 10 10 C 1.46773 * 133.65037 * 180.02562 * 9 8 7 11 11 O 1.21828 * 120.94291 * 0.25032 * 10 9 8 12 12 N 1.35245 * 118.10326 * 179.97438 * 10 9 8 13 13 H 0.97005 * 120.06555 * 179.97438 * 12 10 9 14 14 N 1.39862 * 119.86433 * 0.02562 * 12 10 9 15 15 C 1.30022 * 122.05670 * 359.97438 * 14 12 10 16 16 S 1.76200 * 119.18472 * 180.02562 * 15 14 12 17 17 C 1.76200 * 99.99970 * 359.97438 * 16 15 14 18 18 H 1.08008 * 120.00146 * 0.02562 * 17 16 15 19 19 C 1.38638 * 120.00113 * 179.97438 * 17 16 15 20 20 N 1.31651 * 119.99734 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99906 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47006 * 90.00717 * 21 19 17 23 23 H 1.48508 * 109.46901 * 210.00076 * 21 19 17 24 24 H 1.48494 * 109.47471 * 330.00109 * 21 19 17 25 25 N 1.37360 * 107.53186 * 359.96607 * 9 8 7 26 26 N 1.32008 * 125.69777 * 0.02562 * 7 6 5 27 27 C 1.39312 * 119.76078 * 0.27157 * 6 5 4 28 28 C 1.38024 * 119.88083 * 359.45078 * 27 6 5 29 29 H 1.09001 * 109.47021 * 60.00781 * 1 2 3 30 30 H 1.09000 * 109.46622 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47628 * 300.00051 * 1 2 3 32 32 H 1.08993 * 109.47628 * 239.99949 * 2 1 3 33 33 H 1.09001 * 109.47021 * 119.99219 * 2 1 3 34 34 H 1.08001 * 119.93915 * 0.02562 * 4 3 2 35 35 H 1.08000 * 120.06245 * 180.02562 * 5 4 3 36 36 H 1.08002 * 126.24465 * 0.02882 * 8 7 6 37 37 H 0.97005 * 120.00066 * 179.97438 * 20 19 17 38 38 H 1.08002 * 120.06010 * 179.70635 * 27 6 5 39 39 H 1.08004 * 119.94510 * 180.25477 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2619 2.0706 1.1993 5 6 2.7214 3.3720 1.2050 6 6 2.9536 4.0315 -0.0002 7 6 3.4483 5.4309 -0.0001 8 6 3.7205 6.2019 -1.1383 9 6 4.1568 7.4338 -0.7092 10 6 4.5877 8.6538 -1.4021 11 8 4.6019 8.7113 -2.6189 12 7 4.9631 9.7142 -0.6512 13 1 5.2533 10.5347 -1.0796 14 7 4.9330 9.6249 0.7443 15 6 4.5514 8.5443 1.3586 16 16 4.5422 8.5153 3.1203 17 6 5.1197 10.1457 3.4562 18 1 5.3553 10.8139 2.6410 19 6 5.2707 10.5713 4.7670 20 7 4.9830 9.7571 5.7607 21 14 5.8836 12.2996 5.1231 22 1 4.7264 13.2255 5.2176 23 1 6.6286 12.3058 6.4077 24 1 6.7829 12.7416 4.0272 25 7 4.1516 7.4192 0.6643 26 7 3.7063 6.1567 1.0719 27 6 2.7148 3.3744 -1.2051 28 6 2.2607 2.0710 -1.1994 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.0812 1.5587 2.1329 35 1 2.9007 3.8784 2.1420 36 1 3.6082 5.8864 -2.1651 37 1 5.0890 10.0547 6.6779 38 1 2.8886 3.8826 -2.1422 39 1 2.0792 1.5592 -2.1330 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045972033.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:07 Heat of formation + Delta-G solvation = 100.397287 kcal Electronic energy + Delta-G solvation = -25346.413535 eV Core-core repulsion = 21575.348609 eV Total energy + Delta-G solvation = -3771.064926 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.089 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.80719 -39.60165 -38.83765 -36.84135 -34.64150 -32.94699 -32.68168 -31.24415 -30.91061 -30.06702 -28.91188 -25.90392 -24.84771 -24.32198 -23.26568 -22.48545 -21.66272 -20.19409 -19.37084 -18.57347 -17.65776 -16.91748 -16.21446 -16.07613 -15.87757 -15.45767 -15.22897 -15.15258 -14.40822 -14.25902 -14.03025 -13.81668 -13.67420 -13.41794 -13.29024 -12.99349 -12.79134 -12.39982 -12.04875 -11.71611 -11.56800 -11.30938 -11.27536 -11.22331 -11.09687 -10.97514 -10.75071 -10.44399 -10.35906 -9.80905 -9.67811 -9.30600 -9.13081 -9.03391 -8.71724 -8.12451 -7.09939 -6.70174 -4.47968 0.65628 1.07014 1.32760 1.82565 1.93904 2.22028 2.73633 3.00533 3.06476 3.11938 3.18335 3.39402 3.74738 3.80857 4.00572 4.51362 4.55983 4.67801 4.74564 4.75958 4.89400 4.91065 5.06012 5.10138 5.22145 5.29885 5.32386 5.39344 5.56827 5.63146 5.73500 5.82266 5.88509 5.94865 5.99599 6.17031 6.31764 6.44188 6.48077 6.56450 6.77029 6.85115 7.34465 7.43928 7.89153 8.12295 8.29911 8.81400 10.36690 Molecular weight = 342.09amu Principal moments of inertia in cm(-1) A = 0.013866 B = 0.002785 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.803403 B =10050.613945 C =11966.539177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.076 4.076 4 C -0.119 4.119 5 C -0.083 4.083 6 C -0.016 4.016 7 C 0.111 3.889 8 C -0.165 4.165 9 C 0.018 3.982 10 C 0.553 3.447 11 O -0.530 6.530 12 N -0.530 5.530 13 H 0.436 0.564 14 N -0.294 5.294 15 C 0.284 3.716 16 S 0.216 5.784 17 C -0.552 4.552 18 H 0.112 0.888 19 C 0.080 3.920 20 N -0.866 5.866 21 Si 0.936 3.064 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.265 1.265 25 N -0.300 5.300 26 N -0.226 5.226 27 C -0.091 4.091 28 C -0.120 4.120 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.125 0.875 35 H 0.135 0.865 36 H 0.166 0.834 37 H 0.279 0.721 38 H 0.129 0.871 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.656 -14.856 -9.206 18.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.077 4.077 4 C -0.137 4.137 5 C -0.102 4.102 6 C -0.018 4.018 7 C -0.052 4.052 8 C -0.197 4.197 9 C -0.110 4.110 10 C 0.337 3.663 11 O -0.404 6.404 12 N -0.275 5.275 13 H 0.281 0.719 14 N -0.126 5.126 15 C -0.090 4.090 16 S 0.448 5.552 17 C -0.701 4.701 18 H 0.130 0.870 19 C -0.131 4.131 20 N -0.499 5.499 21 Si 0.761 3.239 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.189 1.189 25 N -0.085 5.085 26 N -0.050 5.050 27 C -0.110 4.110 28 C -0.138 4.138 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.143 0.857 35 H 0.153 0.847 36 H 0.183 0.817 37 H 0.089 0.911 38 H 0.147 0.853 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.637 -14.799 -7.380 17.471 hybrid contribution 0.624 1.778 -1.852 2.642 sum -5.012 -13.020 -9.232 16.730 Atomic orbital electron populations 1.21755 0.94664 1.01648 1.02416 1.20565 0.96216 0.92637 1.02898 1.20011 0.98241 0.96220 0.93242 1.20978 1.00377 0.94628 0.97709 1.21335 0.96585 0.94357 0.97913 1.17700 1.01276 0.88679 0.94136 1.20741 0.99865 0.94269 0.90332 1.21405 1.07305 0.90742 1.00216 1.21816 1.06960 0.97580 0.84625 1.17760 0.78826 0.82767 0.86925 1.90897 1.55358 1.82277 1.11889 1.46878 1.62286 1.15496 1.02873 0.71944 1.75794 1.29478 1.17963 0.89317 1.26978 0.97116 0.80371 1.04579 1.84280 1.73044 1.19702 0.78146 1.23476 1.51589 0.98708 0.96359 0.86993 1.25153 0.93673 0.99750 0.94528 1.69941 1.43635 1.36163 1.00195 0.85869 0.79139 0.80758 0.78178 1.19711 1.20443 1.18919 1.47169 1.46959 1.10117 1.04206 1.77783 1.17789 0.88278 1.21198 1.21113 0.98200 0.94576 0.97136 1.20887 1.00821 0.94471 0.97638 0.92492 0.92475 0.92403 0.91019 0.90946 0.85658 0.84687 0.81677 0.91075 0.85331 0.85734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 2 C -0.09 -0.58 6.06 -27.88 -0.17 -0.75 16 3 C -0.08 -0.70 5.14 -104.56 -0.54 -1.24 16 4 C -0.12 -1.21 9.68 -39.63 -0.38 -1.60 16 5 C -0.08 -1.03 9.68 -39.26 -0.38 -1.41 16 6 C -0.02 -0.21 5.88 -104.90 -0.62 -0.83 16 7 C 0.11 1.79 6.96 -82.88 -0.58 1.21 16 8 C -0.17 -2.63 10.25 -39.11 -0.40 -3.04 16 9 C 0.02 0.34 6.99 -82.19 -0.57 -0.24 16 10 C 0.55 10.56 8.05 -12.60 -0.10 10.46 16 11 O -0.53 -10.55 18.00 5.07 0.09 -10.46 16 12 N -0.53 -9.80 6.69 30.39 0.20 -9.60 16 13 H 0.44 6.71 8.94 -182.77 -1.63 5.08 16 14 N -0.29 -6.30 9.82 30.78 0.30 -6.00 16 15 C 0.28 6.26 8.04 -87.88 -0.71 5.55 16 16 S 0.22 5.13 21.72 -107.50 -2.33 2.79 16 17 C -0.55 -14.04 9.23 30.88 0.29 -13.76 16 18 H 0.11 2.82 6.53 -52.48 -0.34 2.48 16 19 C 0.08 2.02 5.49 -17.48 -0.10 1.92 16 20 N -0.87 -22.62 13.22 55.48 0.73 -21.89 16 21 Si 0.94 19.53 29.55 -169.99 -5.02 14.51 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 25 N -0.30 -6.12 3.98 -9.28 -0.04 -6.16 16 26 N -0.23 -4.29 12.16 33.35 0.41 -3.88 16 27 C -0.09 -0.97 9.57 -39.26 -0.38 -1.34 16 28 C -0.12 -1.10 9.68 -39.63 -0.38 -1.49 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 33 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.14 1.76 7.84 -52.49 -0.41 1.35 16 36 H 0.17 2.11 7.30 -52.49 -0.38 1.73 16 37 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 38 H 0.13 1.15 7.00 -52.49 -0.37 0.79 16 39 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 LS Contribution 359.68 15.07 5.42 5.42 Total: -1.00 -29.11 359.68 -10.12 -39.22 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -5.23 Total: 3.14 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -4.65 Total: -7.09 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 1.61 Total: -47.53 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Atomic # 16 Polarization: 5.13 SS G_CDS: -2.33 Total: 2.79 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.11 -10.12 -39.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045972033.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.619 kcal (2) G-P(sol) polarization free energy of solvation -29.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds