Wall clock time and date at job start Tue Mar 31 2020 05:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47036 * 2 1 4 4 C 1.38319 * 119.88170 * 89.99249 * 3 2 1 5 5 C 1.38016 * 120.11851 * 180.02562 * 4 3 2 6 6 C 1.39326 * 119.88114 * 0.02562 * 5 4 3 7 7 C 1.48428 * 120.11706 * 180.02562 * 6 5 4 8 8 C 1.40147 * 125.69178 * 179.97438 * 7 6 5 9 9 C 1.37553 * 107.51298 * 180.02562 * 8 7 6 10 10 C 1.46773 * 133.65037 * 180.02562 * 9 8 7 11 11 O 1.21828 * 120.94291 * 0.25032 * 10 9 8 12 12 N 1.35245 * 118.10326 * 179.97438 * 10 9 8 13 13 H 0.97005 * 120.06555 * 179.97438 * 12 10 9 14 14 N 1.39862 * 119.86433 * 0.02562 * 12 10 9 15 15 C 1.30022 * 122.05670 * 359.97438 * 14 12 10 16 16 S 1.76200 * 119.18472 * 180.02562 * 15 14 12 17 17 C 1.76200 * 99.99970 * 359.97438 * 16 15 14 18 18 H 1.08008 * 120.00146 * 0.02562 * 17 16 15 19 19 C 1.38638 * 120.00113 * 179.97438 * 17 16 15 20 20 N 1.31651 * 119.99734 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99906 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47006 * 90.00717 * 21 19 17 23 23 H 1.48508 * 109.46901 * 210.00076 * 21 19 17 24 24 H 1.48494 * 109.47471 * 330.00109 * 21 19 17 25 25 N 1.37360 * 107.53186 * 359.96607 * 9 8 7 26 26 N 1.32008 * 125.69777 * 0.02562 * 7 6 5 27 27 C 1.39312 * 119.76078 * 0.27157 * 6 5 4 28 28 C 1.38024 * 119.88083 * 359.45078 * 27 6 5 29 29 H 1.09001 * 109.47021 * 60.00781 * 1 2 3 30 30 H 1.09000 * 109.46622 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47628 * 300.00051 * 1 2 3 32 32 H 1.08993 * 109.47628 * 239.99949 * 2 1 3 33 33 H 1.09001 * 109.47021 * 119.99219 * 2 1 3 34 34 H 1.08001 * 119.93915 * 0.02562 * 4 3 2 35 35 H 1.08000 * 120.06245 * 180.02562 * 5 4 3 36 36 H 1.08002 * 126.24465 * 0.02882 * 8 7 6 37 37 H 0.97005 * 120.00066 * 179.97438 * 20 19 17 38 38 H 1.08002 * 120.06010 * 179.70635 * 27 6 5 39 39 H 1.08004 * 119.94510 * 180.25477 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2619 2.0706 1.1993 5 6 2.7214 3.3720 1.2050 6 6 2.9536 4.0315 -0.0002 7 6 3.4483 5.4309 -0.0001 8 6 3.7205 6.2019 -1.1383 9 6 4.1568 7.4338 -0.7092 10 6 4.5877 8.6538 -1.4021 11 8 4.6019 8.7113 -2.6189 12 7 4.9631 9.7142 -0.6512 13 1 5.2533 10.5347 -1.0796 14 7 4.9330 9.6249 0.7443 15 6 4.5514 8.5443 1.3586 16 16 4.5422 8.5153 3.1203 17 6 5.1197 10.1457 3.4562 18 1 5.3553 10.8139 2.6410 19 6 5.2707 10.5713 4.7670 20 7 4.9830 9.7571 5.7607 21 14 5.8836 12.2996 5.1231 22 1 4.7264 13.2255 5.2176 23 1 6.6286 12.3058 6.4077 24 1 6.7829 12.7416 4.0272 25 7 4.1516 7.4192 0.6643 26 7 3.7063 6.1567 1.0719 27 6 2.7148 3.3744 -1.2051 28 6 2.2607 2.0710 -1.1994 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.0812 1.5587 2.1329 35 1 2.9007 3.8784 2.1420 36 1 3.6082 5.8864 -2.1651 37 1 5.0890 10.0547 6.6779 38 1 2.8886 3.8826 -2.1422 39 1 2.0792 1.5592 -2.1330 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045972033.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:06 Heat of formation + Delta-G solvation = 84.668566 kcal Electronic energy + Delta-G solvation = -25347.095583 eV Core-core repulsion = 21575.348609 eV Total energy + Delta-G solvation = -3771.746974 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.089 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.24791 -40.74713 -40.04163 -38.40257 -35.51780 -34.81605 -34.01881 -32.37355 -32.05286 -31.35674 -29.91607 -27.81358 -25.91179 -25.70589 -24.52340 -23.38108 -22.63719 -21.23485 -20.96157 -20.09999 -19.33116 -18.33860 -17.59810 -17.48639 -17.19750 -17.00627 -16.32595 -16.18287 -15.72788 -15.57669 -15.32676 -14.79563 -14.60217 -14.46773 -14.37422 -14.09848 -14.00470 -13.56621 -13.27000 -13.04669 -12.97232 -12.82757 -12.68454 -12.48615 -12.03585 -11.98561 -11.81037 -11.76144 -11.59059 -11.39389 -11.34571 -10.98485 -10.85286 -10.06991 -9.84976 -9.28608 -8.88981 -8.57370 -6.41912 -0.68946 -0.06606 0.29677 0.33720 0.51448 0.60639 1.37387 1.42274 1.51743 1.54368 1.58850 1.87122 2.07192 2.50785 2.86483 2.92101 3.04992 3.26327 3.44076 3.83438 3.92324 3.97978 4.12955 4.20840 4.39319 4.42851 4.52161 4.61163 4.67514 4.74248 4.92897 4.98468 5.10930 5.14788 5.18307 5.23443 5.31336 5.44448 5.46974 5.52234 5.55144 5.73556 6.04570 6.07240 6.18614 6.38169 6.68903 6.90555 8.51356 Molecular weight = 342.09amu Principal moments of inertia in cm(-1) A = 0.013866 B = 0.002785 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.803403 B =10050.613945 C =11966.539177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.067 4.067 4 C -0.125 4.125 5 C -0.097 4.097 6 C -0.047 4.047 7 C 0.127 3.873 8 C -0.142 4.142 9 C -0.011 4.011 10 C 0.557 3.443 11 O -0.536 6.536 12 N -0.523 5.523 13 H 0.448 0.552 14 N -0.302 5.302 15 C 0.294 3.706 16 S 0.171 5.829 17 C -0.569 4.569 18 H 0.108 0.892 19 C 0.035 3.965 20 N -0.900 5.900 21 Si 1.000 3.000 22 H -0.266 1.266 23 H -0.271 1.271 24 H -0.262 1.262 25 N -0.321 5.321 26 N -0.257 5.257 27 C -0.085 4.085 28 C -0.118 4.118 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.140 0.860 35 H 0.117 0.883 36 H 0.203 0.797 37 H 0.283 0.717 38 H 0.149 0.851 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.263 -16.694 -11.480 21.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.068 4.068 4 C -0.142 4.142 5 C -0.117 4.117 6 C -0.049 4.049 7 C -0.037 4.037 8 C -0.173 4.173 9 C -0.136 4.136 10 C 0.342 3.658 11 O -0.411 6.411 12 N -0.271 5.271 13 H 0.296 0.704 14 N -0.132 5.132 15 C -0.083 4.083 16 S 0.403 5.597 17 C -0.718 4.718 18 H 0.126 0.874 19 C -0.172 4.172 20 N -0.535 5.535 21 Si 0.821 3.179 22 H -0.190 1.190 23 H -0.196 1.196 24 H -0.186 1.186 25 N -0.107 5.107 26 N -0.080 5.080 27 C -0.104 4.104 28 C -0.136 4.136 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.158 0.842 35 H 0.135 0.865 36 H 0.220 0.780 37 H 0.093 0.907 38 H 0.167 0.833 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.239 -16.619 -9.687 20.223 hybrid contribution 0.701 2.046 -1.372 2.561 sum -5.538 -14.574 -11.059 19.114 Atomic orbital electron populations 1.21752 0.94242 1.02472 1.01974 1.20641 0.96417 0.90999 1.04161 1.20396 0.96323 0.97322 0.92784 1.21177 1.00088 0.93782 0.99200 1.21326 0.97626 0.95480 0.97227 1.17800 1.03969 0.87526 0.95595 1.21329 0.97604 0.95170 0.89627 1.21916 1.04461 0.89168 1.01736 1.22126 1.08649 0.98670 0.84191 1.17766 0.78415 0.82861 0.86789 1.90889 1.55757 1.82502 1.11963 1.46805 1.62284 1.16238 1.01740 0.70431 1.75718 1.28433 1.18068 0.90934 1.26525 0.96706 0.81328 1.03780 1.84245 1.75163 1.19989 0.80281 1.23631 1.52298 0.99137 0.96685 0.87427 1.26038 0.93606 1.03450 0.94137 1.70026 1.44914 1.37939 1.00621 0.84917 0.78731 0.76070 0.78161 1.19046 1.19577 1.18642 1.47080 1.48747 1.10275 1.04553 1.77804 1.19179 0.88213 1.22812 1.21375 0.97136 0.95157 0.96752 1.21271 0.99524 0.93852 0.98925 0.92530 0.91090 0.93286 0.89330 0.90225 0.84174 0.86518 0.77991 0.90721 0.83288 0.82608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.89 71.98 0.71 -0.70 16 2 C -0.09 -0.84 6.06 29.85 0.18 -0.66 16 3 C -0.07 -1.03 5.14 -19.82 -0.10 -1.13 16 4 C -0.12 -2.36 9.68 22.24 0.22 -2.14 16 5 C -0.10 -2.41 9.68 22.48 0.22 -2.19 16 6 C -0.05 -1.18 5.88 -20.04 -0.12 -1.30 16 7 C 0.13 4.02 6.96 42.30 0.29 4.31 16 8 C -0.14 -4.28 10.25 22.57 0.23 -4.04 16 9 C -0.01 -0.41 6.99 40.35 0.28 -0.13 16 10 C 0.56 20.89 8.05 86.40 0.70 21.59 16 11 O -0.54 -20.57 18.00 -4.76 -0.09 -20.66 16 12 N -0.52 -19.29 6.69 -175.65 -1.18 -20.47 16 13 H 0.45 13.62 8.94 -213.47 -1.91 11.71 16 14 N -0.30 -13.18 9.82 -56.52 -0.56 -13.74 16 15 C 0.29 13.40 8.04 179.39 1.44 14.84 16 16 S 0.17 8.56 21.72 -56.49 -1.23 7.34 16 17 C -0.57 -29.91 9.23 67.92 0.63 -29.28 16 18 H 0.11 5.58 6.53 -2.91 -0.02 5.56 16 19 C 0.04 1.81 5.49 84.82 0.47 2.27 16 20 N -0.90 -48.46 13.22 21.62 0.29 -48.17 16 21 Si 1.00 40.43 29.55 68.60 2.03 42.45 16 22 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 23 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 24 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 25 N -0.32 -13.41 3.98 -183.28 -0.73 -14.14 16 26 N -0.26 -10.01 12.16 -48.40 -0.59 -10.60 16 27 C -0.08 -1.55 9.57 22.48 0.22 -1.33 16 28 C -0.12 -1.71 9.68 22.24 0.22 -1.50 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.09 0.64 8.08 -2.39 -0.02 0.62 16 33 H 0.08 0.71 8.08 -2.39 -0.02 0.70 16 34 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 35 H 0.12 3.24 7.84 -2.91 -0.02 3.22 16 36 H 0.20 4.42 7.30 -2.91 -0.02 4.40 16 37 H 0.28 14.08 8.31 -92.70 -0.77 13.31 16 38 H 0.15 2.05 7.00 -2.91 -0.02 2.02 16 39 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -64.73 359.68 2.74 -61.99 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -0.79 Total: 17.39 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 5.58 Total: -1.40 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -2.76 Total: -107.12 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.09 Total: -20.66 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.45 kcal Atomic # 16 Polarization: 8.56 SS G_CDS: -1.23 Total: 7.34 kcal Total: -64.73 2.74 -61.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045972033.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.658 kcal (2) G-P(sol) polarization free energy of solvation -64.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds