Wall clock time and date at job start Tue Mar 31 2020 05:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46997 * 2 1 4 4 C 1.36942 * 119.99967 * 274.08074 * 3 2 1 5 5 H 1.07995 * 119.99940 * 137.98618 * 4 3 2 6 6 C 1.38814 * 119.99527 * 317.98811 * 4 3 2 7 7 N 1.31624 * 120.00073 * 339.66610 * 6 4 3 8 8 Si 1.86804 * 119.99929 * 159.67561 * 6 4 3 9 9 H 1.48494 * 109.46863 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47314 * 119.99537 * 8 6 4 11 11 H 1.48503 * 109.46730 * 239.99495 * 8 6 4 12 12 S 1.65596 * 120.00008 * 94.07727 * 3 2 1 13 13 O 1.42096 * 106.40518 * 23.54003 * 12 3 2 14 14 O 1.42108 * 106.40009 * 156.46103 * 12 3 2 15 15 C 1.76204 * 107.21914 * 269.99633 * 12 3 2 16 16 C 1.38111 * 119.98653 * 114.72370 * 15 12 3 17 17 C 1.38829 * 119.98082 * 179.78941 * 16 15 12 18 18 N 1.40110 * 120.01446 * 180.25398 * 17 16 15 19 19 C 1.34775 * 120.00097 * 213.34084 * 18 17 16 20 20 C 1.50701 * 120.00091 * 184.49994 * 19 18 17 21 21 O 1.21288 * 120.00369 * 4.49425 * 19 18 17 22 22 C 1.38866 * 119.97304 * 0.49265 * 17 16 15 23 23 C 1.38069 * 119.97872 * 359.74182 * 22 17 16 24 24 C 1.38689 * 119.99476 * 295.00404 * 15 12 3 25 25 O 1.35972 * 119.98803 * 359.97438 * 24 15 12 26 26 C 1.42896 * 117.00198 * 180.02562 * 25 24 15 27 27 H 1.09003 * 109.46864 * 60.00203 * 1 2 3 28 28 H 1.08997 * 109.46778 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47449 * 300.00471 * 1 2 3 30 30 H 1.08992 * 109.47547 * 239.99657 * 2 1 3 31 31 H 1.09005 * 109.46744 * 119.99268 * 2 1 3 32 32 H 0.96998 * 119.99864 * 180.02562 * 7 6 4 33 33 H 1.08004 * 120.01484 * 0.02965 * 16 15 12 34 34 H 0.97004 * 120.00274 * 33.33949 * 18 17 16 35 35 H 1.08997 * 109.47509 * 59.99081 * 20 19 18 36 36 H 1.09001 * 109.47422 * 179.97438 * 20 19 18 37 37 H 1.09009 * 109.46977 * 299.99663 * 20 19 18 38 38 H 1.07994 * 120.00871 * 179.72151 * 22 17 16 39 39 H 1.08003 * 119.98670 * 180.02562 * 23 22 17 40 40 H 1.08997 * 109.47665 * 59.99408 * 26 25 24 41 41 H 1.08998 * 109.47182 * 180.02562 * 26 25 24 42 42 H 1.09002 * 109.47038 * 299.99773 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1670 2.0549 -1.1830 5 1 1.8608 3.0878 -1.2583 6 6 2.7112 1.4101 -2.2852 7 7 3.4393 0.3260 -2.1203 8 14 2.4104 2.0809 -4.0025 9 1 1.5662 3.2996 -3.9169 10 1 3.7098 2.4217 -4.6354 11 1 1.7156 1.0543 -4.8202 12 16 2.3904 2.1279 1.4305 13 8 2.6738 1.0927 2.3617 14 8 3.3115 3.1631 1.1150 15 6 0.9249 2.9227 2.0007 16 6 0.3201 2.5003 3.1683 17 6 -0.8321 3.1295 3.6197 18 7 -1.4432 2.7050 4.8069 19 6 -2.7836 2.7659 4.9341 20 6 -3.4332 2.4056 6.2453 21 8 -3.4670 3.1108 3.9933 22 6 -1.3816 4.1765 2.8916 23 6 -0.7786 4.5945 1.7220 24 6 0.3757 3.9685 1.2739 25 8 0.9687 4.3805 0.1218 26 6 0.3494 5.4633 -0.5755 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8199 -0.1244 -2.8905 33 1 0.7456 1.6832 3.7321 34 1 -0.9016 2.3672 5.5374 35 1 -3.0640 3.0682 7.0280 36 1 -4.5142 2.5146 6.1573 37 1 -3.1913 1.3734 6.4991 38 1 -2.2804 4.6634 3.2399 39 1 -1.2056 5.4091 1.1557 40 1 0.3205 6.3416 0.0694 41 1 0.9217 5.6910 -1.4748 42 1 -0.6667 5.1829 -0.8531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048264927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:53 Heat of formation + Delta-G solvation = -103.076661 kcal Electronic energy + Delta-G solvation = -29369.960705 eV Core-core repulsion = 25250.470816 eV Total energy + Delta-G solvation = -4119.489889 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.113 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.62200 -39.46047 -37.27296 -35.90126 -35.65911 -34.49760 -34.42600 -31.63903 -31.21589 -30.66066 -29.08560 -28.49446 -26.75484 -24.45469 -23.46650 -22.17301 -21.51619 -20.75490 -18.74372 -18.12100 -17.64717 -17.30906 -16.66059 -16.38911 -15.79846 -15.59218 -15.30423 -15.03471 -14.65068 -14.32832 -14.20792 -14.03881 -13.70567 -13.34585 -13.11032 -12.79233 -12.76556 -12.67319 -12.41221 -12.24751 -11.90702 -11.82811 -11.37170 -11.21342 -11.13376 -10.90367 -10.86470 -10.74249 -10.67449 -10.31457 -10.26937 -10.16062 -10.00215 -9.81953 -9.59224 -9.10616 -8.84048 -7.71243 -7.53385 -6.17952 -3.86592 1.10587 1.38663 1.69634 2.42142 2.93933 3.24238 3.32187 3.35442 3.50377 3.69220 4.24100 4.47288 4.57306 4.79475 4.89273 4.95537 5.01981 5.02983 5.14293 5.25000 5.34142 5.39331 5.45395 5.60034 5.72070 5.77584 5.78901 5.97800 6.14846 6.22775 6.31254 6.33433 6.43441 6.45671 6.70616 6.86201 7.02089 7.24250 7.39802 7.49908 7.60103 7.85386 7.94876 8.62179 9.13542 9.54756 10.86727 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.015577 B = 0.004289 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.143628 B = 6526.499051 C = 6989.937360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.121 3.879 3 N -0.835 5.835 4 C -0.271 4.271 5 H 0.102 0.898 6 C 0.038 3.962 7 N -0.858 5.858 8 Si 0.913 3.087 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.282 1.282 12 S 2.633 3.367 13 O -1.005 7.005 14 O -0.961 6.961 15 C -0.672 4.672 16 C -0.014 4.014 17 C 0.073 3.927 18 N -0.669 5.669 19 C 0.507 3.493 20 C -0.172 4.172 21 O -0.532 6.532 22 C -0.037 4.037 23 C -0.216 4.216 24 C 0.220 3.780 25 O -0.282 6.282 26 C 0.025 3.975 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.036 0.964 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.265 0.735 33 H 0.146 0.854 34 H 0.411 0.589 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.054 0.946 41 H 0.106 0.894 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.511 5.245 11.099 16.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.006 4.006 3 N -0.667 5.667 4 C -0.409 4.409 5 H 0.120 0.880 6 C -0.170 4.170 7 N -0.498 5.498 8 Si 0.739 3.261 9 H -0.192 1.192 10 H -0.209 1.209 11 H -0.208 1.208 12 S 2.729 3.271 13 O -0.995 6.995 14 O -0.950 6.950 15 C -0.755 4.755 16 C -0.035 4.035 17 C -0.021 4.021 18 N -0.315 5.315 19 C 0.295 3.705 20 C -0.232 4.232 21 O -0.408 6.408 22 C -0.058 4.058 23 C -0.236 4.236 24 C 0.171 3.829 25 O -0.192 6.192 26 C -0.070 4.070 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.120 0.880 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.164 0.836 34 H 0.247 0.753 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.072 0.928 41 H 0.124 0.876 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.001 5.368 10.863 16.366 hybrid contribution -0.821 0.447 -0.458 1.041 sum -11.822 5.815 10.405 16.788 Atomic orbital electron populations 1.22210 0.98859 0.99935 1.01278 1.21171 0.91264 0.84324 1.03859 1.52464 1.76848 1.20190 1.17169 1.19436 1.37368 0.98299 0.85749 0.88027 1.25517 0.94255 0.97004 1.00210 1.70047 1.29245 1.19696 1.30821 0.86111 0.78211 0.78985 0.82745 1.19250 1.20851 1.20843 1.05049 0.73621 0.73949 0.74459 1.93373 1.83452 1.56697 1.65983 1.93446 1.58474 1.59466 1.83634 1.30641 1.27488 1.11833 1.05489 1.20481 0.93533 0.96366 0.93143 1.17579 0.96415 0.97729 0.90378 1.43501 1.07377 1.64447 1.16185 1.20985 0.81601 0.77096 0.90770 1.21917 1.02913 1.03934 0.94407 1.90737 1.62690 1.46376 1.41010 1.21023 0.98274 0.92883 0.93576 1.21182 0.97937 1.04532 0.99919 1.18385 0.89465 0.90312 0.84725 1.86439 1.50462 1.49698 1.32629 1.23131 0.99032 0.87837 0.96998 0.92304 0.93484 0.94446 0.87952 0.92287 0.92496 0.83591 0.75315 0.89116 0.88684 0.89042 0.84475 0.84662 0.92779 0.87599 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 10.22 37.16 0.38 -2.84 16 2 C 0.12 2.80 6.01 -4.04 -0.02 2.78 16 3 N -0.84 -20.98 2.78 -59.91 -0.17 -21.15 16 4 C -0.27 -7.10 8.51 -15.06 -0.13 -7.23 16 5 H 0.10 2.58 5.37 -52.49 -0.28 2.30 16 6 C 0.04 0.98 4.98 -17.43 -0.09 0.90 16 7 N -0.86 -23.41 11.68 55.49 0.65 -22.76 16 8 Si 0.91 20.08 29.60 -169.99 -5.03 15.05 16 9 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 12 S 2.63 64.05 5.25 -107.50 -0.56 63.49 16 13 O -1.01 -25.01 15.53 -57.17 -0.89 -25.90 16 14 O -0.96 -26.19 16.51 -62.55 -1.03 -27.22 16 15 C -0.67 -13.61 5.92 -39.46 -0.23 -13.84 16 16 C -0.01 -0.24 9.46 -39.41 -0.37 -0.62 16 17 C 0.07 1.10 6.29 -83.62 -0.53 0.58 16 18 N -0.67 -7.47 5.35 -9.83 -0.05 -7.52 16 19 C 0.51 5.69 7.69 -10.99 -0.08 5.61 16 20 C -0.17 -1.04 10.32 36.01 0.37 -0.67 16 21 O -0.53 -8.28 14.72 5.55 0.08 -8.19 16 22 C -0.04 -0.58 8.66 -39.41 -0.34 -0.92 16 23 C -0.22 -3.41 9.03 -39.46 -0.36 -3.77 16 24 C 0.22 4.18 6.63 -39.23 -0.26 3.92 16 25 O -0.28 -5.50 6.54 -29.59 -0.19 -5.69 16 26 C 0.02 0.35 9.81 101.05 0.99 1.34 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 2.54 5.78 -51.93 -0.30 2.24 16 31 H 0.06 1.34 6.93 -51.93 -0.36 0.98 16 32 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.15 2.31 7.33 -52.48 -0.38 1.93 16 34 H 0.41 3.11 8.82 -40.82 -0.36 2.75 16 35 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.58 8.12 -51.93 -0.42 0.16 16 37 H 0.09 0.39 8.14 -51.92 -0.42 -0.03 16 38 H 0.14 1.99 6.37 -52.49 -0.33 1.66 16 39 H 0.14 1.73 6.29 -52.48 -0.33 1.40 16 40 H 0.05 0.61 7.66 -51.93 -0.40 0.22 16 41 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.06 0.69 7.66 -51.93 -0.40 0.29 16 LS Contribution 360.30 15.07 5.43 5.43 Total: -1.00 -35.77 360.30 -7.68 -43.45 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.24 Total: 5.77 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -0.67 Total: -14.76 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.43 Total: -51.42 kcal Atomic # 8 Polarization: -64.97 SS G_CDS: -2.03 Total: -67.00 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.05 kcal Atomic # 16 Polarization: 64.05 SS G_CDS: -0.56 Total: 63.49 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.77 -7.68 -43.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048264927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.623 kcal (2) G-P(sol) polarization free energy of solvation -35.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds