Wall clock time and date at job start Tue Mar 31 2020 07:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46871 * 2 1 4 4 C 1.52996 * 109.47509 * 240.00012 * 2 1 3 5 5 C 1.50698 * 109.47232 * 119.99801 * 2 1 3 6 6 N 1.31072 * 126.66182 * 245.41341 * 5 2 1 7 7 N 1.28838 * 107.98920 * 180.02562 * 6 5 2 8 8 N 1.28736 * 109.40150 * 359.73534 * 7 6 5 9 9 N 1.29022 * 108.80464 * 0.43895 * 8 7 6 10 10 C 1.46503 * 126.43679 * 179.83750 * 9 8 7 11 11 C 1.50699 * 109.46989 * 275.45539 * 10 9 8 12 12 O 1.21293 * 119.99919 * 1.68259 * 11 10 9 13 13 N 1.34771 * 120.00503 * 181.68758 * 11 10 9 14 14 C 1.46498 * 120.00562 * 185.01078 * 13 11 10 15 15 C 1.50702 * 109.47395 * 270.00073 * 14 13 11 16 16 H 1.08002 * 119.99908 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00015 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99956 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00134 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47053 * 90.00782 * 19 17 15 21 21 H 1.48500 * 109.47275 * 210.00118 * 19 17 15 22 22 H 1.48497 * 109.47480 * 330.00439 * 19 17 15 23 23 C 1.39933 * 119.99710 * 5.01159 * 13 11 10 24 24 C 1.38869 * 120.07078 * 68.63211 * 23 13 11 25 25 C 1.38112 * 119.93071 * 180.31788 * 24 23 13 26 26 C 1.38278 * 120.06992 * 359.93951 * 25 24 23 27 27 C 1.38285 * 120.14078 * 0.04261 * 26 25 24 28 28 C 1.38109 * 120.07034 * 0.02562 * 27 26 25 29 29 H 1.08994 * 109.47349 * 304.98021 * 1 2 3 30 30 H 1.09003 * 109.47332 * 64.98548 * 1 2 3 31 31 H 1.09005 * 109.46985 * 184.98131 * 1 2 3 32 32 H 1.09006 * 109.46900 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46903 * 299.99465 * 3 2 1 34 34 H 1.08994 * 109.46866 * 60.00078 * 3 2 1 35 35 H 1.09005 * 109.47172 * 300.00239 * 4 2 1 36 36 H 1.09002 * 109.47485 * 59.99788 * 4 2 1 37 37 H 1.08998 * 109.47679 * 180.02562 * 4 2 1 38 38 H 1.08997 * 109.47302 * 155.45199 * 10 9 8 39 39 H 1.09003 * 109.47383 * 35.44733 * 10 9 8 40 40 H 1.08998 * 109.46731 * 29.99923 * 14 13 11 41 41 H 1.09003 * 109.47036 * 149.99988 * 14 13 11 42 42 H 0.97000 * 120.00323 * 179.97438 * 18 17 15 43 43 H 1.08003 * 120.03558 * 0.25988 * 24 23 13 44 44 H 1.07996 * 119.96299 * 179.97438 * 25 24 23 45 45 H 1.08004 * 119.93070 * 180.02562 * 26 25 24 46 46 H 1.07998 * 119.96290 * 179.97438 * 27 26 25 47 47 H 1.07999 * 120.03463 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2305 6 7 2.7057 -0.1783 2.2212 7 7 2.9512 -1.1072 3.0796 8 7 2.4472 -2.2168 2.6648 9 7 1.8772 -2.0145 1.5251 10 6 1.1855 -3.0149 0.7083 11 6 2.1896 -3.7524 -0.1395 12 8 3.3704 -3.4913 -0.0462 13 7 1.7756 -4.7021 -1.0015 14 6 2.7578 -5.4950 -1.7451 15 6 3.0758 -4.8076 -3.0479 16 1 2.5941 -3.8737 -3.2974 17 6 3.9808 -5.3714 -3.9219 18 7 4.2587 -4.7713 -5.0587 19 14 4.8134 -6.9871 -3.4909 20 1 3.9951 -8.1168 -4.0000 21 1 6.1605 -7.0315 -4.1141 22 1 4.9464 -7.0974 -2.0160 23 6 0.4075 -4.9308 -1.1863 24 6 -0.3794 -3.9739 -1.8136 25 6 -1.7306 -4.1998 -1.9887 26 6 -2.2998 -5.3779 -1.5411 27 6 -1.5189 -6.3329 -0.9164 28 6 -0.1673 -6.1124 -0.7371 29 1 -0.3634 0.5891 0.8420 30 1 -0.3634 0.4346 -0.9313 31 1 -0.3633 -1.0238 0.0892 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6768 -0.2074 -2.1392 37 1 3.1301 -0.7216 -1.2490 38 1 0.4600 -2.5189 0.0636 39 1 0.6703 -3.7218 1.3587 40 1 3.6684 -5.5925 -1.1540 41 1 2.3479 -6.4846 -1.9470 42 1 4.8957 -5.1677 -5.6734 43 1 0.0646 -3.0536 -2.1635 44 1 -2.3432 -3.4558 -2.4761 45 1 -3.3567 -5.5524 -1.6795 46 1 -1.9665 -7.2518 -0.5676 47 1 0.4420 -6.8585 -0.2487 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048324723.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:37 Heat of formation + Delta-G solvation = 118.358911 kcal Electronic energy + Delta-G solvation = -31559.166404 eV Core-core repulsion = 27552.367759 eV Total energy + Delta-G solvation = -4006.798644 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.11060 -40.41578 -38.58386 -37.43266 -35.57160 -35.03618 -32.79013 -31.56783 -31.03579 -30.06988 -29.48750 -27.76322 -27.52180 -27.23100 -23.93259 -23.60081 -22.83721 -22.66569 -22.09536 -20.12476 -19.50350 -18.02098 -17.48635 -17.12095 -16.54422 -16.19911 -15.85115 -15.52118 -15.50544 -14.79330 -14.61286 -14.22945 -14.19726 -13.97354 -13.51221 -13.44181 -13.09521 -12.90539 -12.70721 -12.53066 -12.47030 -12.46673 -12.03510 -11.99797 -11.84014 -11.67818 -11.61640 -11.34311 -11.25923 -11.16173 -11.06872 -11.01262 -10.81730 -10.72230 -10.35870 -9.96939 -9.75669 -9.70208 -8.98645 -8.91933 -8.73222 -8.08010 -6.23013 -4.23412 1.21035 1.32096 1.34329 1.91357 2.39278 2.63784 3.15576 3.19648 3.27387 3.30658 3.69512 3.79513 4.15323 4.26499 4.29699 4.39043 4.63964 4.67021 4.85888 4.91554 4.92546 5.05406 5.08264 5.09734 5.31528 5.38752 5.45196 5.49085 5.52437 5.63023 5.66267 5.67396 5.75013 5.77282 5.83847 5.89556 5.97120 6.17702 6.19652 6.25757 6.30929 6.40149 6.45679 6.46350 6.68101 6.77319 6.97098 7.39074 7.74654 8.20872 8.39455 8.75298 8.77138 9.35177 10.89753 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009144 B = 0.004805 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3061.457202 B = 5825.284299 C = 7051.829365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.012 3.988 3 C -0.130 4.130 4 C -0.150 4.150 5 C 0.207 3.793 6 N -0.303 5.303 7 N -0.079 5.079 8 N -0.085 5.085 9 N -0.287 5.287 10 C 0.086 3.914 11 C 0.505 3.495 12 O -0.498 6.498 13 N -0.545 5.545 14 C 0.220 3.780 15 C -0.531 4.531 16 H 0.077 0.923 17 C 0.078 3.922 18 N -0.891 5.891 19 Si 0.870 3.130 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.264 1.264 23 C 0.143 3.857 24 C -0.125 4.125 25 C -0.106 4.106 26 C -0.126 4.126 27 C -0.107 4.107 28 C -0.122 4.122 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.046 0.954 41 H 0.033 0.967 42 H 0.266 0.734 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.122 0.878 46 H 0.125 0.875 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.334 4.174 7.250 18.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.009 3.991 3 C -0.188 4.188 4 C -0.208 4.208 5 C -0.071 4.071 6 N -0.151 5.151 7 N -0.073 5.073 8 N -0.070 5.070 9 N -0.087 5.087 10 C -0.040 4.040 11 C 0.289 3.711 12 O -0.371 6.371 13 N -0.274 5.274 14 C 0.101 3.899 15 C -0.570 4.570 16 H 0.095 0.905 17 C -0.126 4.126 18 N -0.528 5.528 19 Si 0.697 3.303 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.189 1.189 23 C 0.052 3.948 24 C -0.145 4.145 25 C -0.125 4.125 26 C -0.144 4.144 27 C -0.126 4.126 28 C -0.142 4.142 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.156 0.844 39 H 0.152 0.848 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.145 0.855 44 H 0.144 0.856 45 H 0.140 0.860 46 H 0.143 0.857 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.795 4.247 8.423 17.546 hybrid contribution 0.099 -1.311 -0.999 1.651 sum -14.696 2.937 7.423 16.725 Atomic orbital electron populations 1.22062 0.92413 1.02260 1.03872 1.19312 0.95991 0.96176 0.87669 1.21744 1.02400 0.92046 1.02613 1.22107 1.03297 0.99962 0.95407 1.25992 0.99100 0.82505 0.99504 1.74944 1.14995 1.24428 1.00762 1.78542 1.16088 0.92282 1.20382 1.78849 1.09876 1.21446 0.96873 1.47770 1.37404 1.08769 1.14779 1.22337 0.94943 0.91733 0.94961 1.19927 0.89220 0.80879 0.81083 1.90826 1.16923 1.62818 1.66575 1.45519 1.04679 1.36465 1.40719 1.19905 0.87154 0.90347 0.92466 1.21144 1.25874 1.09652 1.00297 0.90481 1.24784 0.95805 0.97330 0.94664 1.69865 1.34309 1.39207 1.09455 0.86935 0.79755 0.84189 0.79450 1.19901 1.20679 1.18890 1.17795 0.83631 0.95191 0.98179 1.21438 0.94135 1.00530 0.98365 1.21034 0.94344 0.97648 0.99445 1.21160 0.99919 0.94120 0.99234 1.21021 0.93250 0.99214 0.99120 1.21340 0.95268 0.97292 1.00304 0.91426 0.89982 0.92651 0.91426 0.91180 0.91456 0.92543 0.90192 0.90902 0.84436 0.84752 0.93646 0.94911 0.92353 0.85509 0.85611 0.85984 0.85742 0.85553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.36 37.16 0.31 -0.95 16 2 C 0.01 0.14 0.75 -155.66 -0.12 0.03 16 3 C -0.13 -1.37 8.00 37.16 0.30 -1.07 16 4 C -0.15 -2.04 8.23 37.16 0.31 -1.74 16 5 C 0.21 3.20 6.41 -155.43 -1.00 2.21 16 6 N -0.30 -5.31 11.72 32.70 0.38 -4.92 16 7 N -0.08 -1.50 13.43 60.35 0.81 -0.69 16 8 N -0.08 -1.55 13.29 60.35 0.80 -0.75 16 9 N -0.29 -4.62 2.83 -59.44 -0.17 -4.79 16 10 C 0.09 1.19 4.72 -5.19 -0.02 1.17 16 11 C 0.50 9.33 5.93 -10.99 -0.07 9.26 16 12 O -0.50 -11.59 16.06 5.55 0.09 -11.50 16 13 N -0.55 -10.10 2.50 -114.74 -0.29 -10.38 16 14 C 0.22 4.99 4.14 -5.19 -0.02 4.97 16 15 C -0.53 -14.24 9.94 -34.44 -0.34 -14.59 16 16 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 17 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 18 N -0.89 -26.26 13.96 55.43 0.77 -25.48 16 19 Si 0.87 20.70 27.47 -169.99 -4.67 16.03 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 23 C 0.14 2.13 4.41 -83.69 -0.37 1.76 16 24 C -0.13 -1.61 8.38 -39.39 -0.33 -1.94 16 25 C -0.11 -1.08 10.04 -39.61 -0.40 -1.47 16 26 C -0.13 -1.18 10.04 -39.55 -0.40 -1.58 16 27 C -0.11 -1.09 10.04 -39.61 -0.40 -1.49 16 28 C -0.12 -1.55 9.73 -39.39 -0.38 -1.93 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.44 5.64 -51.93 -0.29 0.15 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.83 3.75 -51.93 -0.19 0.64 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.14 1.53 3.04 -51.93 -0.16 1.37 16 39 H 0.13 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.05 1.12 6.56 -51.93 -0.34 0.78 16 41 H 0.03 0.71 7.32 -51.93 -0.38 0.33 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.13 1.63 7.52 -52.48 -0.39 1.24 16 44 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 46 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 384.17 15.07 5.79 5.79 Total: -1.00 -34.69 384.17 -5.93 -40.62 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.42 Total: 1.39 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -3.03 Total: -5.31 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 2.31 Total: -47.02 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.09 Total: -11.50 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.69 -5.93 -40.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048324723.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.979 kcal (2) G-P(sol) polarization free energy of solvation -34.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds