Wall clock time and date at job start Tue Mar 31 2020 07:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39753 * 125.83674 * 2 1 4 4 C 1.36107 * 107.82647 * 180.13996 * 3 2 1 5 5 N 1.39476 * 126.21547 * 179.90059 * 4 3 2 6 6 C 1.34775 * 119.99800 * 359.69511 * 5 4 3 7 7 O 1.21289 * 120.00500 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99773 * 179.97438 * 6 5 4 9 9 O 1.42905 * 109.47264 * 179.97438 * 8 6 5 10 10 C 1.35897 * 117.00093 * 179.97438 * 9 8 6 11 11 C 1.38754 * 120.05516 * 359.72833 * 10 9 8 12 12 C 1.38132 * 119.94111 * 179.74499 * 11 10 9 13 13 C 1.38289 * 120.05426 * 0.50680 * 12 11 10 14 14 C 1.50701 * 119.94211 * 179.74593 * 13 12 11 15 15 C 1.38241 * 120.11132 * 359.76692 * 13 12 11 16 16 C 1.50697 * 119.97098 * 179.97438 * 15 13 12 17 17 C 1.38169 * 120.05726 * 359.97438 * 15 13 12 18 18 N 1.35254 * 107.57011 * 359.64313 * 4 3 2 19 19 C 1.46494 * 126.05065 * 180.22508 * 18 4 3 20 20 C 1.50706 * 109.47194 * 89.99751 * 19 18 4 21 21 H 1.08003 * 119.99587 * 0.02562 * 20 19 18 22 22 C 1.37881 * 120.00243 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00068 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 119.99809 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47224 * 90.00099 * 24 22 20 26 26 H 1.48499 * 109.47105 * 209.99713 * 24 22 20 27 27 H 1.48503 * 109.47327 * 329.99653 * 24 22 20 28 28 N 1.30842 * 125.83725 * 179.73770 * 2 1 3 29 29 H 1.08999 * 109.47492 * 270.23442 * 1 2 3 30 30 H 1.08998 * 109.47204 * 30.24121 * 1 2 3 31 31 H 1.09006 * 109.46862 * 150.23756 * 1 2 3 32 32 H 1.08001 * 126.08924 * 0.02750 * 3 2 1 33 33 H 0.96998 * 120.00033 * 179.68696 * 5 4 3 34 34 H 1.09001 * 109.47438 * 59.99564 * 8 6 5 35 35 H 1.09004 * 109.47113 * 299.99819 * 8 6 5 36 36 H 1.08000 * 120.03298 * 359.97012 * 11 10 9 37 37 H 1.07996 * 119.97076 * 180.25178 * 12 11 10 38 38 H 1.08991 * 109.46862 * 270.02263 * 14 13 12 39 39 H 1.09001 * 109.47018 * 30.02039 * 14 13 12 40 40 H 1.08996 * 109.46847 * 150.01677 * 14 13 12 41 41 H 1.08997 * 109.47554 * 270.02176 * 16 15 13 42 42 H 1.09005 * 109.46975 * 30.02559 * 16 15 13 43 43 H 1.08997 * 109.47219 * 150.02111 * 16 15 13 44 44 H 1.08003 * 120.02471 * 179.97438 * 17 15 13 45 45 H 1.09004 * 109.47533 * 209.99782 * 19 18 4 46 46 H 1.09003 * 109.47466 * 330.00095 * 19 18 4 47 47 H 0.96996 * 119.99837 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6196 0.7121 -0.0032 5 7 4.7512 1.5275 -0.0062 6 6 4.6156 2.8684 -0.0124 7 8 3.5095 3.3661 -0.0157 8 6 5.8383 3.7494 -0.0150 9 8 5.4371 5.1210 -0.0222 10 6 6.4261 6.0530 -0.0249 11 6 7.7555 5.6557 -0.0150 12 6 8.7589 6.6050 -0.0231 13 6 8.4393 7.9505 -0.0305 14 6 9.5360 8.9840 -0.0335 15 6 7.1156 8.3489 -0.0346 16 6 6.7709 9.8159 -0.0420 17 6 6.1082 7.4032 -0.0319 18 7 3.6093 -0.6404 0.0030 19 6 4.7870 -1.5115 0.0069 20 6 5.1909 -1.8038 1.4291 21 1 4.6264 -1.3830 2.2481 22 6 6.2811 -2.6083 1.6848 23 7 6.6332 -2.8638 2.9259 24 14 7.2578 -3.3355 0.2683 25 1 8.3487 -2.4022 -0.1114 26 1 7.8416 -4.6356 0.6855 27 1 6.3597 -3.5468 -0.8953 28 7 2.2731 -1.0607 0.0049 29 1 -0.3634 0.0042 1.0276 30 1 -0.3633 0.8878 -0.5176 31 1 -0.3633 -0.8922 -0.5102 32 1 1.9902 2.1597 0.0004 33 1 5.6358 1.1295 -0.0037 34 1 6.4344 3.5409 -0.9034 35 1 6.4325 3.5489 0.8765 36 1 8.0056 4.6051 -0.0047 37 1 9.7938 6.2962 -0.0196 38 1 9.7987 9.2380 0.9933 39 1 10.4117 8.5831 -0.5440 40 1 9.1909 9.8784 -0.5522 41 1 6.6864 10.1745 0.9838 42 1 7.5549 10.3707 -0.5575 43 1 5.8222 9.9636 -0.5578 44 1 5.0742 7.7150 -0.0347 45 1 4.5499 -2.4455 -0.5027 46 1 5.6085 -1.0144 -0.5091 47 1 7.3999 -3.4301 3.1057 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048333340.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:42 Heat of formation + Delta-G solvation = 30.431587 kcal Electronic energy + Delta-G solvation = -28635.672932 eV Core-core repulsion = 24592.768721 eV Total energy + Delta-G solvation = -4042.904210 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.08154 -40.51013 -39.29884 -37.92893 -34.89033 -33.81870 -32.96201 -32.33189 -32.20775 -30.04938 -29.33950 -28.11699 -27.08943 -26.36069 -26.17380 -22.82439 -22.48521 -21.84319 -20.71044 -19.84773 -19.45810 -18.13386 -17.29214 -17.18476 -16.59750 -16.45825 -16.09661 -15.55411 -15.07337 -14.96435 -14.62663 -14.42979 -14.26454 -14.11119 -13.83724 -13.59407 -13.25141 -13.09844 -13.02958 -12.75767 -12.66123 -12.50540 -12.38981 -12.25661 -12.21952 -11.93514 -11.87043 -11.51969 -11.20176 -11.08078 -11.02460 -10.88085 -10.56904 -10.28454 -10.02740 -9.80643 -9.60584 -9.04115 -8.90938 -8.26980 -8.02132 -7.56495 -6.37781 -4.42630 1.06334 1.17727 2.07511 2.18075 2.93928 3.02074 3.11480 3.13726 3.21948 3.45676 3.49024 3.69936 4.09891 4.34146 4.50335 4.57044 4.66179 4.76496 4.81569 4.86678 4.88086 4.94153 5.06196 5.20875 5.25334 5.34978 5.43427 5.47487 5.54093 5.54652 5.72280 5.83447 5.98047 6.00132 6.04083 6.07152 6.13232 6.16114 6.23487 6.31037 6.39050 6.51415 6.58935 6.69597 7.12834 7.15282 7.36182 7.44704 7.68810 8.06978 8.22034 8.50807 8.68581 9.16545 10.74395 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.010531 B = 0.002547 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.244773 B =10989.910268 C =13252.803485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.056 3.944 3 C -0.290 4.290 4 C 0.305 3.695 5 N -0.637 5.637 6 C 0.522 3.478 7 O -0.489 6.489 8 C 0.048 3.952 9 O -0.288 6.288 10 C 0.131 3.869 11 C -0.212 4.212 12 C -0.075 4.075 13 C -0.128 4.128 14 C -0.112 4.112 15 C -0.049 4.049 16 C -0.118 4.118 17 C -0.146 4.146 18 N -0.343 5.343 19 C 0.229 3.771 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.080 3.920 23 N -0.882 5.882 24 Si 0.871 3.129 25 H -0.271 1.271 26 H -0.278 1.278 27 H -0.263 1.263 28 N -0.280 5.280 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.164 0.836 33 H 0.416 0.584 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.132 0.868 45 H 0.056 0.944 46 H 0.035 0.965 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.536 21.564 -8.071 23.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.109 4.109 3 C -0.322 4.322 4 C 0.083 3.917 5 N -0.285 5.285 6 C 0.307 3.693 7 O -0.361 6.361 8 C -0.031 4.031 9 O -0.200 6.200 10 C 0.085 3.915 11 C -0.230 4.230 12 C -0.094 4.094 13 C -0.128 4.128 14 C -0.168 4.168 15 C -0.049 4.049 16 C -0.174 4.174 17 C -0.164 4.164 18 N -0.128 5.128 19 C 0.110 3.890 20 C -0.585 4.585 21 H 0.100 0.900 22 C -0.125 4.125 23 N -0.519 5.519 24 Si 0.697 3.303 25 H -0.197 1.197 26 H -0.203 1.203 27 H -0.187 1.187 28 N -0.105 5.105 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.181 0.819 33 H 0.253 0.747 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.150 0.850 45 H 0.073 0.927 46 H 0.053 0.947 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.860 20.537 -7.947 22.357 hybrid contribution 1.566 -0.293 -0.407 1.644 sum 5.426 20.244 -8.354 22.562 Atomic orbital electron populations 1.20044 0.87314 1.02441 1.02393 1.22063 0.96648 0.90896 1.01324 1.21304 0.88965 1.00622 1.21299 1.17812 0.87806 0.83060 1.03024 1.42484 1.08501 1.05087 1.72465 1.19861 0.90717 0.81407 0.77340 1.90690 1.26249 1.73398 1.45753 1.22343 0.95337 0.80837 1.04614 1.86129 1.31807 1.13491 1.88589 1.18988 0.86935 0.89138 0.96414 1.21280 0.91924 1.00653 1.09166 1.20810 0.98918 0.91969 0.97656 1.19671 0.94118 0.94508 1.04539 1.20783 0.96387 0.97465 1.02174 1.19526 0.92026 0.95585 0.97759 1.20881 1.02400 0.91488 1.02656 1.20278 1.00212 0.89248 1.06693 1.48910 1.06275 1.01871 1.55728 1.19949 0.79222 0.90091 0.99718 1.21195 1.14229 1.32770 0.90286 0.90030 1.24827 0.96644 0.95199 0.95793 1.69870 1.26795 1.36630 1.18562 0.86925 0.80745 0.79804 0.82810 1.19665 1.20317 1.18730 1.77380 0.85696 1.21681 1.25753 0.91082 0.91002 0.91452 0.81909 0.74716 0.88436 0.88112 0.85215 0.85690 0.91412 0.91810 0.91322 0.90809 0.90920 0.91306 0.84965 0.92652 0.94748 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.44 36.01 0.38 -0.55 16 2 C 0.06 1.11 7.21 -82.45 -0.59 0.51 16 3 C -0.29 -5.87 9.58 -39.78 -0.38 -6.25 16 4 C 0.30 6.24 7.66 -153.16 -1.17 5.07 16 5 N -0.64 -10.51 5.42 -11.46 -0.06 -10.57 16 6 C 0.52 8.08 7.87 -10.98 -0.09 8.00 16 7 O -0.49 -9.20 13.63 -14.36 -0.20 -9.39 16 8 C 0.05 0.54 5.22 36.01 0.19 0.73 16 9 O -0.29 -3.88 9.67 -39.32 -0.38 -4.26 16 10 C 0.13 1.55 6.69 -39.22 -0.26 1.28 16 11 C -0.21 -2.13 9.04 -39.43 -0.36 -2.49 16 12 C -0.08 -0.69 9.69 -39.60 -0.38 -1.07 16 13 C -0.13 -1.13 5.88 -104.60 -0.62 -1.75 16 14 C -0.11 -0.69 9.60 36.01 0.35 -0.34 16 15 C -0.05 -0.45 5.88 -104.65 -0.62 -1.07 16 16 C -0.12 -0.76 9.60 36.00 0.35 -0.41 16 17 C -0.15 -1.59 9.64 -39.43 -0.38 -1.97 16 18 N -0.34 -7.75 3.60 -61.57 -0.22 -7.97 16 19 C 0.23 5.26 5.07 -5.19 -0.03 5.23 16 20 C -0.55 -14.68 9.94 -34.44 -0.34 -15.02 16 21 H 0.08 2.52 8.06 -52.48 -0.42 2.10 16 22 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 23 N -0.88 -25.33 13.96 55.43 0.77 -24.56 16 24 Si 0.87 19.13 27.47 -169.99 -4.67 14.46 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.26 -5.56 6.54 56.52 0.37 -5.19 16 28 N -0.28 -6.37 12.56 33.65 0.42 -5.95 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.16 3.23 5.83 -52.49 -0.31 2.93 16 33 H 0.42 5.94 7.96 -40.82 -0.33 5.61 16 34 H 0.10 0.82 7.68 -51.93 -0.40 0.42 16 35 H 0.10 0.95 7.65 -51.93 -0.40 0.55 16 36 H 0.13 1.07 6.30 -52.49 -0.33 0.73 16 37 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 40 H 0.07 0.35 5.94 -51.93 -0.31 0.04 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.37 5.94 -51.93 -0.31 0.07 16 43 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 44 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 45 H 0.06 1.30 7.20 -51.93 -0.37 0.92 16 46 H 0.03 0.70 6.93 -51.93 -0.36 0.34 16 47 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 392.34 15.07 5.91 5.91 Total: -1.00 -34.25 392.34 -8.98 -43.23 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.50 Total: 7.15 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -4.06 Total: -8.05 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.91 Total: -49.04 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.58 Total: -13.65 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.67 Total: 14.46 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.25 -8.98 -43.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048333340.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.661 kcal (2) G-P(sol) polarization free energy of solvation -34.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds