Wall clock time and date at job start Tue Mar 31 2020 05:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35896 * 116.99970 * 2 1 4 4 C 1.38735 * 120.05576 * 180.02562 * 3 2 1 5 5 C 1.38132 * 119.94764 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.05694 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.94554 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.47076 * 90.00338 * 7 6 5 9 9 C 1.34775 * 119.99852 * 179.97438 * 8 7 6 10 10 O 1.21587 * 120.00606 * 359.97438 * 9 8 7 11 11 N 1.34786 * 119.99808 * 179.97438 * 9 8 7 12 12 C 1.39940 * 119.99924 * 175.49624 * 11 9 8 13 13 C 1.38965 * 120.03405 * 214.85221 * 12 11 9 14 14 C 1.38162 * 120.06281 * 179.74922 * 13 12 11 15 15 C 1.38168 * 120.14237 * 0.54483 * 14 13 12 16 16 C 1.38912 * 120.06691 * 359.71012 * 15 14 13 17 17 O 1.35749 * 120.03189 * 179.97438 * 16 15 14 18 18 C 1.34837 * 116.99999 * 5.36452 * 17 16 15 19 19 H 1.08000 * 119.99787 * 354.96227 * 18 17 16 20 20 C 1.38645 * 119.99854 * 174.96385 * 18 17 16 21 21 N 1.31564 * 120.00298 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00017 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.46866 * 89.99856 * 22 20 18 24 24 H 1.48501 * 109.47090 * 210.00479 * 22 20 18 25 25 H 1.48502 * 109.46825 * 330.00335 * 22 20 18 26 26 C 1.38708 * 120.03651 * 35.12421 * 12 11 9 27 27 C 1.38270 * 120.11062 * 0.25251 * 6 5 4 28 28 C 1.38148 * 120.04973 * 359.45124 * 27 6 5 29 29 H 1.09001 * 109.47211 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46662 * 300.00104 * 1 2 3 31 31 H 1.09000 * 109.47422 * 59.99721 * 1 2 3 32 32 H 1.08009 * 120.02287 * 0.02562 * 4 3 2 33 33 H 1.08001 * 119.97795 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47121 * 209.99870 * 7 6 5 35 35 H 1.08991 * 109.47347 * 330.00146 * 7 6 5 36 36 H 0.97004 * 120.00006 * 359.97438 * 8 7 6 37 37 H 0.96998 * 119.99748 * 355.49340 * 11 9 8 38 38 H 1.07998 * 119.96589 * 359.97438 * 13 12 11 39 39 H 1.08005 * 119.92506 * 180.27892 * 14 13 12 40 40 H 1.07994 * 119.96499 * 179.72637 * 15 14 13 41 41 H 0.96997 * 119.99986 * 179.97438 * 21 20 18 42 42 H 1.08003 * 120.06734 * 359.96113 * 26 12 11 43 43 H 1.07997 * 119.97358 * 179.70288 * 27 6 5 44 44 H 1.08004 * 120.02475 * 180.24774 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 0.0016 7 6 3.9863 5.0184 0.0028 8 7 4.2073 5.4550 -1.3781 9 6 4.8083 6.6361 -1.6233 10 8 5.1667 7.3396 -0.6986 11 7 5.0122 7.0376 -2.8937 12 6 5.5498 8.3040 -3.1496 13 6 5.1365 9.0227 -4.2648 14 6 5.6631 10.2753 -4.5152 15 6 6.6101 10.8125 -3.6644 16 6 7.0312 10.0968 -2.5509 17 8 7.9619 10.6251 -1.7158 18 6 8.3553 11.8914 -1.9603 19 1 7.9942 12.4094 -2.8364 20 6 9.2235 12.5284 -1.0869 21 7 9.6631 11.8976 -0.0193 22 14 9.7691 14.2825 -1.4259 23 1 8.8226 15.2285 -0.7822 24 1 11.1315 14.4927 -0.8737 25 1 9.7869 14.5208 -2.8916 26 6 6.5000 8.8408 -2.2934 27 6 1.9212 3.6048 0.0080 28 6 1.2916 2.3751 0.0012 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 4.0209 0.3798 -0.0014 33 1 5.1346 2.5749 0.0000 34 1 3.3585 5.7457 0.5177 35 1 4.9444 4.9375 0.5160 36 1 3.9211 4.8940 -2.1158 37 1 4.7862 6.4487 -3.6306 38 1 4.4003 8.6033 -4.9345 39 1 5.3370 10.8338 -5.3801 40 1 7.0230 11.7900 -3.8653 41 1 10.2707 12.3431 0.5914 42 1 6.8255 8.2826 -1.4280 43 1 1.3344 4.5114 0.0140 44 1 0.2130 2.3202 0.0022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048516888.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:42 Heat of formation + Delta-G solvation = -29.788259 kcal Electronic energy + Delta-G solvation = -27486.950809 eV Core-core repulsion = 23371.028086 eV Total energy + Delta-G solvation = -4115.922722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.65691 -40.18607 -38.73244 -38.07789 -36.56672 -34.67705 -33.99352 -32.17978 -31.55277 -31.03930 -29.34221 -28.44922 -27.85171 -25.65553 -25.15606 -23.06581 -22.42504 -21.56307 -21.29024 -20.56914 -18.64091 -18.38271 -18.17790 -17.07214 -16.71354 -16.22342 -16.11297 -15.46127 -15.38228 -14.98065 -14.83546 -14.70351 -14.30811 -14.18874 -14.01160 -13.93640 -13.66936 -13.45817 -13.06037 -12.90412 -12.61304 -12.41638 -12.36093 -11.82146 -11.68435 -11.50062 -11.44468 -11.21521 -11.15399 -10.96125 -10.72516 -10.41259 -9.92888 -9.64222 -9.41264 -9.18968 -9.06946 -8.75207 -8.58043 -7.59120 -7.10872 -6.35563 -3.94725 0.89273 0.95227 2.16847 2.42068 2.76631 2.81550 3.18141 3.19308 3.23964 3.40022 3.42404 4.03298 4.34661 4.34898 4.42700 4.47325 4.62528 4.66872 4.67512 4.94121 4.97939 4.99623 5.18929 5.20898 5.38614 5.41278 5.59214 5.66490 5.68707 5.84198 5.90064 5.92015 6.16255 6.25595 6.30023 6.31862 6.38270 6.49271 6.61595 6.90831 6.93571 7.10091 7.13980 7.31216 7.41674 7.56723 7.89341 8.08940 8.11532 8.75009 9.09306 9.81688 10.82439 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.023684 B = 0.001756 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.939196 B =15942.723361 C =16756.537273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.132 3.868 4 C -0.154 4.154 5 C -0.058 4.058 6 C -0.143 4.143 7 C 0.184 3.816 8 N -0.744 5.744 9 C 0.697 3.303 10 O -0.559 6.559 11 N -0.682 5.682 12 C 0.192 3.808 13 C -0.237 4.237 14 C -0.059 4.059 15 C -0.247 4.247 16 C 0.167 3.833 17 O -0.174 6.174 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.186 4.186 27 C -0.058 4.058 28 C -0.211 4.211 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.395 0.605 37 H 0.401 0.599 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.127 0.873 41 H 0.269 0.731 42 H 0.136 0.864 43 H 0.128 0.872 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.960 -21.837 -3.466 28.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.086 3.914 4 C -0.173 4.173 5 C -0.077 4.077 6 C -0.143 4.143 7 C 0.060 3.940 8 N -0.401 5.401 9 C 0.398 3.602 10 O -0.434 6.434 11 N -0.329 5.329 12 C 0.098 3.902 13 C -0.259 4.259 14 C -0.078 4.078 15 C -0.267 4.267 16 C 0.112 3.888 17 O -0.077 6.077 18 C -0.467 4.467 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.496 5.496 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.207 4.207 27 C -0.077 4.077 28 C -0.230 4.230 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.228 0.772 37 H 0.235 0.765 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.145 0.855 41 H 0.079 0.921 42 H 0.153 0.847 43 H 0.146 0.854 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.285 -21.443 -2.141 27.625 hybrid contribution -0.407 0.414 -0.926 1.093 sum -17.692 -21.030 -3.068 27.652 Atomic orbital electron populations 1.23081 0.78205 1.04063 1.01497 1.86079 1.21555 1.26997 1.88531 1.19117 0.92451 0.84174 0.95627 1.20455 0.91341 0.98778 1.06698 1.20980 1.00231 0.90781 0.95698 1.19836 0.93677 0.94839 1.05992 1.19956 1.00355 0.91250 0.82433 1.45172 1.65475 1.20847 1.08588 1.15985 0.79117 0.81606 0.83510 1.91032 1.55094 1.54404 1.42872 1.42459 1.66840 1.17118 1.06480 1.16953 0.93540 0.83923 0.95736 1.20239 1.07316 0.97086 1.01229 1.20476 0.95460 0.94091 0.97756 1.21168 1.04453 1.02842 0.98233 1.19148 0.88141 0.92067 0.89422 1.83995 1.47385 1.29120 1.47248 1.21340 1.28063 0.87264 1.10071 0.89027 1.25295 0.96467 0.99899 0.94937 1.70061 1.30686 1.37187 1.11657 0.85713 0.78215 0.80644 0.78828 1.19932 1.20335 1.19222 1.20202 1.00321 0.96735 1.03476 1.20934 0.93877 0.97268 0.95591 1.21244 1.00150 0.92245 1.09367 0.88161 0.92520 0.92524 0.84984 0.84833 0.90663 0.90499 0.77187 0.76474 0.87509 0.87117 0.85523 0.92095 0.84655 0.85370 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.11 16 2 O -0.32 -2.55 10.50 -19.41 -0.20 -2.76 16 3 C 0.13 1.10 6.69 -39.22 -0.26 0.84 16 4 C -0.15 -1.26 9.99 -39.44 -0.39 -1.65 16 5 C -0.06 -0.47 9.69 -39.61 -0.38 -0.85 16 6 C -0.14 -1.22 5.25 -104.60 -0.55 -1.76 16 7 C 0.18 1.93 5.80 -5.20 -0.03 1.90 16 8 N -0.74 -8.24 5.55 -66.42 -0.37 -8.61 16 9 C 0.70 11.18 8.41 -86.91 -0.73 10.45 16 10 O -0.56 -11.96 13.78 5.29 0.07 -11.89 16 11 N -0.68 -10.14 5.34 -14.24 -0.08 -10.22 16 12 C 0.19 3.69 6.30 -83.71 -0.53 3.17 16 13 C -0.24 -4.15 9.96 -39.34 -0.39 -4.54 16 14 C -0.06 -1.10 10.03 -39.64 -0.40 -1.49 16 15 C -0.25 -5.56 9.17 -39.36 -0.36 -5.92 16 16 C 0.17 4.30 6.64 -39.13 -0.26 4.04 16 17 O -0.17 -5.26 9.76 0.03 0.00 -5.26 16 18 C -0.39 -11.33 9.49 30.88 0.29 -11.04 16 19 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 20 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -26.18 13.67 55.48 0.76 -25.43 16 22 Si 0.94 21.09 29.55 -169.99 -5.02 16.07 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 C -0.19 -4.40 8.64 -39.21 -0.34 -4.74 16 27 C -0.06 -0.45 9.69 -39.60 -0.38 -0.84 16 28 C -0.21 -1.57 9.04 -39.43 -0.36 -1.93 16 29 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 31 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 32 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 35 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 36 H 0.39 3.20 8.48 -40.82 -0.35 2.85 16 37 H 0.40 4.20 8.84 -40.82 -0.36 3.84 16 38 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 39 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 40 H 0.13 2.82 5.63 -52.49 -0.30 2.52 16 41 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.14 3.47 6.22 -52.48 -0.33 3.14 16 43 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.13 0.70 6.30 -52.48 -0.33 0.37 16 LS Contribution 378.46 15.07 5.70 5.70 Total: -1.00 -36.56 378.46 -8.55 -45.11 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -5.24 Total: 9.55 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -4.18 Total: -12.27 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.31 Total: -44.25 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.13 Total: -19.91 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.56 -8.55 -45.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048516888.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.324 kcal (2) G-P(sol) polarization free energy of solvation -36.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds