Wall clock time and date at job start Tue Mar 31 2020 05:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35895 * 117.00434 * 2 1 4 4 C 1.38755 * 120.05618 * 359.95177 * 3 2 1 5 5 C 1.38114 * 119.94819 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05621 * 0.03057 * 5 4 3 7 7 C 1.38245 * 120.11054 * 0.02562 * 6 5 4 8 8 C 1.38167 * 120.05789 * 359.95789 * 7 6 5 9 9 C 1.50695 * 120.02952 * 180.02562 * 8 7 6 10 10 N 1.46494 * 109.47673 * 260.00271 * 9 8 7 11 11 C 1.34773 * 120.00711 * 180.02562 * 10 9 8 12 12 O 1.21591 * 119.99360 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00604 * 180.02562 * 11 10 9 14 14 C 1.39945 * 120.00139 * 175.48906 * 13 11 10 15 15 C 1.38956 * 120.03564 * 214.84878 * 14 13 11 16 16 C 1.38160 * 120.06252 * 179.74826 * 15 14 13 17 17 C 1.38165 * 120.13985 * 0.55502 * 16 15 14 18 18 C 1.38901 * 120.06975 * 359.70121 * 17 16 15 19 19 O 1.35754 * 120.03133 * 179.97438 * 18 17 16 20 20 C 1.34829 * 117.00223 * 5.37015 * 19 18 17 21 21 H 1.08000 * 119.99723 * 354.95898 * 20 19 18 22 22 C 1.38654 * 119.99867 * 174.96267 * 20 19 18 23 23 N 1.31559 * 119.99529 * 179.97438 * 22 20 19 24 24 Si 1.86791 * 120.00317 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47187 * 90.00022 * 24 22 20 26 26 H 1.48493 * 109.47355 * 209.99928 * 24 22 20 27 27 H 1.48507 * 109.47044 * 330.00257 * 24 22 20 28 28 C 1.38703 * 120.03112 * 35.13261 * 14 13 11 29 29 H 1.09002 * 109.47225 * 60.00130 * 1 2 3 30 30 H 1.08999 * 109.47462 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47379 * 300.00505 * 1 2 3 32 32 H 1.08006 * 120.02437 * 0.05190 * 4 3 2 33 33 H 1.07999 * 119.97354 * 180.29665 * 5 4 3 34 34 H 1.08007 * 119.94690 * 179.97438 * 6 5 4 35 35 H 1.08004 * 119.97495 * 179.97438 * 7 6 5 36 36 H 1.08993 * 109.46954 * 20.00711 * 9 8 7 37 37 H 1.09006 * 109.46429 * 140.00208 * 9 8 7 38 38 H 0.97006 * 119.99926 * 0.02562 * 10 9 8 39 39 H 0.96998 * 119.99600 * 355.49226 * 13 11 10 40 40 H 1.07997 * 119.96484 * 0.02562 * 15 14 13 41 41 H 1.08004 * 119.92579 * 180.27831 * 16 15 14 42 42 H 1.07998 * 119.96376 * 179.72292 * 17 16 15 43 43 H 0.97005 * 119.99773 * 180.02562 * 23 22 20 44 44 H 1.08005 * 120.07166 * 359.94867 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0010 5 6 1.9209 3.6047 -0.0005 6 6 3.3020 3.6757 0.0004 7 6 4.0560 2.5170 0.0003 8 6 3.4312 1.2847 0.0001 9 6 4.2537 0.0220 0.0005 10 7 4.3200 -0.5182 -1.3596 11 6 5.0071 -1.6520 -1.6017 12 8 5.5724 -2.2264 -0.6913 13 7 5.0685 -2.1487 -2.8531 14 6 5.8586 -3.2721 -3.1222 15 6 6.5168 -3.3838 -4.3409 16 6 7.3011 -4.4901 -4.6050 17 6 7.4245 -5.4938 -3.6635 18 6 6.7648 -5.3904 -2.4455 19 8 6.8862 -6.3773 -1.5213 20 6 7.7482 -7.3756 -1.8012 21 1 8.2430 -7.4085 -2.7606 22 6 7.9993 -8.3598 -0.8574 23 7 8.8400 -9.3341 -1.1308 24 14 7.1439 -8.3024 0.8022 25 1 5.8638 -9.0512 0.7254 26 1 8.0180 -8.9205 1.8312 27 1 6.8698 -6.8897 1.1692 28 6 5.9808 -4.2778 -2.1748 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.2128 2.3204 -0.0010 33 1 1.3341 4.5113 0.0036 34 1 3.7924 4.6380 0.0004 35 1 5.1345 2.5750 0.0006 36 1 5.2609 0.2447 0.3525 37 1 3.7920 -0.7121 0.6609 38 1 3.8693 -0.0598 -2.0861 39 1 4.5651 -1.7275 -3.5673 40 1 6.4186 -2.6030 -5.0805 41 1 7.8152 -4.5725 -5.5512 42 1 8.0347 -6.3594 -3.8748 43 1 9.0153 -10.0229 -0.4707 44 1 5.4672 -4.1950 -1.2283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048516914.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:46 Heat of formation + Delta-G solvation = -26.722568 kcal Electronic energy + Delta-G solvation = -28220.745965 eV Core-core repulsion = 24104.956181 eV Total energy + Delta-G solvation = -4115.789784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.79615 -40.15898 -38.78493 -37.84595 -36.75338 -34.98900 -34.04146 -32.28335 -31.77344 -30.53177 -29.52095 -28.53709 -27.74350 -26.10500 -25.09542 -22.61212 -22.55653 -21.77565 -21.23467 -20.56638 -18.67709 -18.25987 -17.99828 -17.34567 -16.69939 -16.30402 -16.05726 -15.66778 -15.36865 -15.10354 -14.87703 -14.82477 -14.37329 -14.26245 -14.03516 -13.76845 -13.51256 -13.29105 -12.97488 -12.92863 -12.68519 -12.37752 -12.26720 -12.20236 -11.86660 -11.54572 -11.52223 -11.20627 -11.12929 -10.90241 -10.77429 -10.18780 -9.91046 -9.64911 -9.38755 -9.22181 -9.05764 -8.77458 -8.60811 -7.67808 -7.21514 -6.32522 -3.98621 0.78638 0.99773 2.10190 2.32703 2.75833 2.87047 3.31448 3.34223 3.37124 3.40046 3.54194 4.24125 4.30272 4.35138 4.38128 4.56670 4.60988 4.67309 4.74604 4.88127 4.91581 5.01028 5.11535 5.18686 5.21434 5.35482 5.45377 5.64533 5.72512 5.81555 5.86471 6.01715 6.10129 6.15603 6.21901 6.32899 6.34697 6.43925 6.53121 6.80548 6.95880 7.03038 7.19385 7.26770 7.42769 7.69828 7.90454 8.08450 8.12997 8.72660 9.03487 9.67895 10.74994 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.015039 B = 0.002303 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.382220 B =12155.684666 C =13088.241392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.146 3.854 4 C -0.213 4.213 5 C -0.073 4.073 6 C -0.161 4.161 7 C -0.060 4.060 8 C -0.140 4.140 9 C 0.190 3.810 10 N -0.738 5.738 11 C 0.700 3.300 12 O -0.563 6.563 13 N -0.682 5.682 14 C 0.193 3.807 15 C -0.229 4.229 16 C -0.060 4.060 17 C -0.234 4.234 18 C 0.173 3.827 19 O -0.215 6.215 20 C -0.387 4.387 21 H 0.107 0.893 22 C 0.063 3.937 23 N -0.881 5.881 24 Si 0.902 3.098 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.256 1.256 28 C -0.186 4.186 29 H 0.055 0.945 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.394 0.606 39 H 0.401 0.599 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.133 0.867 43 H 0.278 0.722 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.870 27.105 -1.188 31.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.219 6.219 3 C 0.099 3.901 4 C -0.232 4.232 5 C -0.092 4.092 6 C -0.179 4.179 7 C -0.079 4.079 8 C -0.141 4.141 9 C 0.067 3.933 10 N -0.394 5.394 11 C 0.400 3.600 12 O -0.438 6.438 13 N -0.329 5.329 14 C 0.099 3.901 15 C -0.250 4.250 16 C -0.079 4.079 17 C -0.254 4.254 18 C 0.120 3.880 19 O -0.119 6.119 20 C -0.462 4.462 21 H 0.124 0.876 22 C -0.140 4.140 23 N -0.520 5.520 24 Si 0.728 3.272 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.180 1.180 28 C -0.208 4.208 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.151 0.849 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.227 0.773 39 H 0.236 0.764 40 H 0.127 0.873 41 H 0.132 0.868 42 H 0.151 0.849 43 H 0.088 0.912 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.272 26.158 0.026 30.806 hybrid contribution -1.003 0.545 -0.115 1.148 sum -17.275 26.704 -0.089 31.805 Atomic orbital electron populations 1.23101 0.78211 1.04335 1.01215 1.86182 1.21411 1.26340 1.87993 1.18935 0.91731 0.84520 0.94886 1.21259 1.00161 0.92319 1.09472 1.20999 0.94760 0.97001 0.96405 1.21083 0.93896 0.98508 1.04441 1.21021 1.00287 0.90809 0.95767 1.19294 0.90562 0.95663 1.08615 1.19804 0.98887 0.91356 0.83267 1.45071 1.57174 1.26538 1.10660 1.15940 0.79976 0.80771 0.83275 1.91007 1.49384 1.60322 1.43122 1.42454 1.50092 1.30980 1.09416 1.16926 0.93375 0.85296 0.94539 1.20312 1.05632 1.01384 0.97697 1.20531 0.96503 0.92885 0.98010 1.21282 1.07102 1.02127 0.94892 1.18880 0.92963 0.87611 0.88514 1.83587 1.57173 1.29901 1.41288 1.20784 1.20816 1.00876 1.03751 0.87558 1.24448 0.95910 0.94462 0.99148 1.69653 1.33497 1.12518 1.36306 0.86212 0.79182 0.79828 0.82002 1.19941 1.20872 1.18026 1.20209 1.06518 0.92200 1.01824 0.92608 0.87968 0.92614 0.85331 0.85728 0.85639 0.84919 0.90675 0.90336 0.77305 0.76430 0.87292 0.86811 0.84900 0.91160 0.84653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -2.91 9.73 -19.41 -0.19 -3.10 16 3 C 0.15 1.30 6.66 -39.21 -0.26 1.04 16 4 C -0.21 -1.50 9.04 -39.44 -0.36 -1.86 16 5 C -0.07 -0.46 10.04 -39.61 -0.40 -0.86 16 6 C -0.16 -1.04 10.04 -39.56 -0.40 -1.44 16 7 C -0.06 -0.46 9.67 -39.60 -0.38 -0.84 16 8 C -0.14 -1.28 5.26 -104.47 -0.55 -1.83 16 9 C 0.19 2.16 5.46 -5.20 -0.03 2.13 16 10 N -0.74 -8.57 5.55 -66.42 -0.37 -8.94 16 11 C 0.70 11.20 8.41 -86.92 -0.73 10.47 16 12 O -0.56 -11.86 13.78 5.29 0.07 -11.79 16 13 N -0.68 -9.99 5.34 -14.24 -0.08 -10.07 16 14 C 0.19 3.59 6.30 -83.72 -0.53 3.07 16 15 C -0.23 -3.90 9.96 -39.34 -0.39 -4.30 16 16 C -0.06 -1.11 10.03 -39.64 -0.40 -1.51 16 17 C -0.23 -5.26 9.17 -39.36 -0.36 -5.62 16 18 C 0.17 4.32 6.64 -39.14 -0.26 4.06 16 19 O -0.21 -6.06 8.58 0.04 0.00 -6.06 16 20 C -0.39 -11.36 9.95 30.89 0.31 -11.05 16 21 H 0.11 3.15 5.43 -52.49 -0.29 2.86 16 22 C 0.06 1.85 5.49 -17.51 -0.10 1.75 16 23 N -0.88 -26.22 13.96 55.48 0.77 -25.45 16 24 Si 0.90 22.89 28.62 -169.99 -4.86 18.03 16 25 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.26 -6.70 7.11 56.52 0.40 -6.30 16 28 C -0.19 -4.23 8.64 -39.21 -0.34 -4.57 16 29 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 32 H 0.13 0.66 6.30 -52.48 -0.33 0.33 16 33 H 0.12 0.50 8.06 -52.49 -0.42 0.07 16 34 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 35 H 0.13 0.84 8.04 -52.48 -0.42 0.42 16 36 H 0.08 0.87 8.00 -51.93 -0.42 0.45 16 37 H 0.08 1.04 7.85 -51.93 -0.41 0.63 16 38 H 0.39 3.48 8.48 -40.82 -0.35 3.13 16 39 H 0.40 4.16 8.84 -40.82 -0.36 3.80 16 40 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 41 H 0.11 1.74 8.06 -52.48 -0.42 1.31 16 42 H 0.13 3.09 5.63 -52.49 -0.30 2.80 16 43 H 0.28 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.14 3.29 6.22 -52.48 -0.33 2.96 16 LS Contribution 376.27 15.07 5.67 5.67 Total: -1.00 -35.60 376.27 -8.39 -43.99 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -5.23 Total: 7.94 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -4.18 Total: -10.22 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.33 Total: -44.45 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.12 Total: -20.95 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.86 Total: 18.03 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.60 -8.39 -43.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048516914.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.267 kcal (2) G-P(sol) polarization free energy of solvation -35.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds