Wall clock time and date at job start Tue Mar 31 2020 06:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34770 * 116.99969 * 2 1 4 4 O 1.21537 * 120.00176 * 0.02562 * 3 2 1 5 5 C 1.47241 * 120.00019 * 180.02562 * 3 2 1 6 6 C 1.38094 * 126.41449 * 0.19500 * 5 3 2 7 7 N 1.35061 * 107.31889 * 180.25639 * 6 5 3 8 8 C 1.37303 * 125.78813 * 179.75476 * 7 6 5 9 9 H 1.08007 * 119.99853 * 158.27553 * 8 7 6 10 10 C 1.39051 * 120.00148 * 338.26904 * 8 7 6 11 11 N 1.31243 * 119.99621 * 159.77831 * 10 8 7 12 12 Si 1.86796 * 119.99949 * 339.78155 * 10 8 7 13 13 H 1.48498 * 109.46975 * 93.77220 * 12 10 8 14 14 H 1.48502 * 109.47116 * 213.77034 * 12 10 8 15 15 H 1.48503 * 109.47206 * 333.77098 * 12 10 8 16 16 N 1.39941 * 108.41993 * 359.72942 * 7 6 5 17 17 C 1.30514 * 108.95858 * 0.02562 * 16 7 6 18 18 S 1.76198 * 125.93516 * 179.97438 * 17 16 7 19 19 O 1.42093 * 106.40363 * 264.21720 * 18 17 16 20 20 O 1.42098 * 106.39987 * 131.29319 * 18 17 16 21 21 N 1.65608 * 107.21788 * 17.75713 * 18 17 16 22 22 C 1.46920 * 120.62575 * 264.92323 * 21 18 17 23 23 C 1.53624 * 108.54450 * 126.36928 * 22 21 18 24 24 C 1.53048 * 109.24154 * 54.85160 * 23 22 21 25 25 C 1.53042 * 109.53755 * 298.51303 * 24 23 22 26 26 C 1.46921 * 120.63279 * 85.20297 * 21 18 17 27 27 H 1.09003 * 109.47277 * 60.00000 * 1 2 3 28 28 H 1.08997 * 109.47344 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47209 * 299.99627 * 1 2 3 30 30 H 1.08005 * 126.33704 * 359.97438 * 6 5 3 31 31 H 0.97002 * 119.99645 * 179.97438 * 11 10 8 32 32 H 1.09002 * 109.58822 * 246.19955 * 22 21 18 33 33 H 1.08994 * 109.59113 * 6.62527 * 22 21 18 34 34 H 1.09001 * 109.63205 * 294.86260 * 23 22 21 35 35 H 1.08994 * 109.43600 * 174.72145 * 23 22 21 36 36 H 1.09002 * 109.45700 * 178.49278 * 24 23 22 37 37 H 1.08996 * 109.45735 * 58.53625 * 24 23 22 38 38 H 1.08997 * 109.49766 * 301.41671 * 25 24 23 39 39 H 1.08992 * 109.49766 * 181.31400 * 25 24 23 40 40 H 1.09009 * 109.58681 * 353.37017 * 26 21 18 41 41 H 1.09000 * 109.58797 * 113.79624 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2201 0.0005 5 6 3.5342 1.2779 -0.0006 6 6 4.4110 0.2110 -0.0049 7 7 5.6624 0.7190 0.0020 8 6 6.8253 -0.0109 0.0054 9 1 7.7462 0.4388 -0.3356 10 6 6.8175 -1.3291 0.4479 11 7 7.7846 -2.1444 0.0982 12 14 5.4304 -1.9394 1.5401 13 1 4.3754 -2.5605 0.6996 14 1 5.9588 -2.9462 2.4953 15 1 4.8542 -0.7968 2.2935 16 7 5.5727 2.1156 0.0044 17 6 4.3137 2.4596 -0.0002 18 16 3.6923 4.1084 0.0012 19 8 3.4164 4.4321 1.3570 20 8 2.7134 4.1690 -1.0271 21 7 4.9311 5.0996 -0.4734 22 6 5.7780 5.7689 0.5233 23 6 7.2471 5.4425 0.2145 24 6 7.5560 5.8291 -1.2337 25 6 6.6724 5.0139 -2.1808 26 6 5.2004 5.3311 -1.8991 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.1451 -0.8358 -0.0081 31 1 7.7794 -3.0639 0.4072 32 1 5.6216 6.8464 0.4713 33 1 5.5239 5.4084 1.5200 34 1 7.4216 4.3753 0.3513 35 1 7.8930 6.0064 0.8873 36 1 8.6047 5.6238 -1.4486 37 1 7.3576 6.8914 -1.3762 38 1 6.8524 3.9508 -2.0214 39 1 6.9093 5.2728 -3.2126 40 1 4.5650 4.6816 -2.5012 41 1 4.9977 6.3736 -2.1446 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049402084.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:15 Heat of formation + Delta-G solvation = -86.580097 kcal Electronic energy + Delta-G solvation = -29610.523441 eV Core-core repulsion = 25426.322985 eV Total energy + Delta-G solvation = -4184.200455 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.108 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.66169 -39.40389 -38.19079 -36.69218 -35.90678 -35.27510 -34.32283 -32.24996 -31.71994 -30.88144 -30.17211 -27.30226 -25.93639 -24.33713 -23.12286 -23.06585 -21.68753 -20.57939 -19.81294 -18.37534 -18.30706 -17.39734 -17.13197 -16.44816 -15.99791 -15.83322 -15.63025 -15.55951 -14.50413 -14.44183 -14.21121 -14.10292 -13.82311 -13.56690 -13.44551 -13.31960 -13.01952 -12.88022 -12.73592 -12.27561 -11.80090 -11.63780 -11.58023 -11.49635 -11.42766 -11.39451 -11.03728 -10.95593 -10.87166 -10.50923 -10.44827 -10.41244 -10.35243 -10.24092 -10.06510 -9.90569 -9.12325 -8.81263 -8.23687 -7.43285 -5.03833 0.85012 1.89004 2.31469 2.74152 2.82812 2.93215 3.01151 3.28968 3.48413 3.64415 3.85732 4.18736 4.29920 4.78296 4.90017 5.05595 5.12352 5.22886 5.35932 5.36491 5.41545 5.43656 5.51798 5.56726 5.67477 5.70661 5.82993 5.88351 5.88809 5.94780 6.09092 6.18868 6.20809 6.35372 6.42891 6.59162 6.70911 6.78695 6.84461 6.86150 7.41928 7.75212 8.28882 8.34901 8.52307 9.59812 Molecular weight = 343.11amu Principal moments of inertia in cm(-1) A = 0.009978 B = 0.006126 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.635662 B = 4569.654320 C = 6694.704524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.534 3.466 4 O -0.516 6.516 5 C -0.227 4.227 6 C -0.008 4.008 7 N -0.126 5.126 8 C -0.301 4.301 9 H 0.141 0.859 10 C 0.079 3.921 11 N -0.787 5.787 12 Si 0.879 3.121 13 H -0.254 1.254 14 H -0.269 1.269 15 H -0.243 1.243 16 N -0.248 5.248 17 C -0.466 4.466 18 S 2.731 3.269 19 O -0.956 6.956 20 O -0.934 6.934 21 N -0.993 5.993 22 C 0.122 3.878 23 C -0.139 4.139 24 C -0.111 4.111 25 C -0.138 4.138 26 C 0.125 3.875 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.174 0.826 31 H 0.299 0.701 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.307 6.794 -1.627 7.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.381 3.619 4 O -0.405 6.405 5 C -0.244 4.244 6 C -0.159 4.159 7 N 0.111 4.889 8 C -0.435 4.435 9 H 0.159 0.841 10 C -0.142 4.142 11 N -0.413 5.413 12 Si 0.702 3.298 13 H -0.179 1.179 14 H -0.195 1.195 15 H -0.167 1.167 16 N -0.080 5.080 17 C -0.704 4.704 18 S 2.816 3.184 19 O -0.945 6.945 20 O -0.923 6.923 21 N -0.832 5.832 22 C -0.003 4.003 23 C -0.178 4.178 24 C -0.149 4.149 25 C -0.177 4.177 26 C 0.000 4.000 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.191 0.809 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.028 7.548 -1.413 7.942 hybrid contribution -0.818 -1.621 0.433 1.867 sum -2.846 5.926 -0.980 6.647 Atomic orbital electron populations 1.23203 0.76895 1.03084 1.02567 1.86556 1.22828 1.32934 1.85147 1.20235 0.87794 0.81305 0.72585 1.90868 1.66503 1.35385 1.47794 1.18164 0.88962 0.91570 1.25667 1.22677 0.84609 0.98966 1.09685 1.44907 1.04896 1.03944 1.35165 1.19643 0.87302 0.93214 1.43389 0.84149 1.25449 0.98334 0.94756 0.95617 1.69580 1.30838 1.06395 1.34515 0.86731 0.80636 0.80884 0.81528 1.17884 1.19508 1.16660 1.77213 1.15282 0.91042 1.24417 1.34551 0.98306 1.21113 1.16429 1.01187 0.71970 0.71523 0.73731 1.93535 1.82751 1.82746 1.35470 1.93577 1.54568 1.85750 1.58450 1.57714 1.51451 1.60928 1.13099 1.21509 0.90232 0.97043 0.91488 1.22017 0.95601 1.03446 0.96690 1.21404 0.99244 0.99289 0.94960 1.21936 0.94678 1.02027 0.99086 1.21381 0.96977 1.01785 0.79853 0.91885 0.88497 0.92042 0.80890 0.88986 0.91251 0.89110 0.90011 0.91295 0.92033 0.92323 0.90405 0.91250 0.89519 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.57 101.05 1.07 1.59 16 2 O -0.36 -6.91 10.39 -40.68 -0.42 -7.33 16 3 C 0.53 12.11 7.95 34.39 0.27 12.38 16 4 O -0.52 -12.37 13.94 -26.31 -0.37 -12.73 16 5 C -0.23 -5.40 6.13 -105.02 -0.64 -6.05 16 6 C -0.01 -0.19 8.46 -16.18 -0.14 -0.33 16 7 N -0.13 -3.03 3.52 -11.15 -0.04 -3.07 16 8 C -0.30 -7.25 10.83 -14.80 -0.16 -7.41 16 9 H 0.14 3.45 8.06 -52.48 -0.42 3.03 16 10 C 0.08 1.82 5.44 -17.50 -0.10 1.73 16 11 N -0.79 -18.19 13.95 55.50 0.77 -17.41 16 12 Si 0.88 17.96 24.76 -169.99 -4.21 13.75 16 13 H -0.25 -4.90 6.67 56.52 0.38 -4.52 16 14 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 15 H -0.24 -5.32 6.80 56.52 0.38 -4.93 16 16 N -0.25 -5.75 12.43 31.58 0.39 -5.36 16 17 C -0.47 -10.80 7.23 -16.84 -0.12 -10.93 16 18 S 2.73 57.39 4.93 -107.50 -0.53 56.86 16 19 O -0.96 -21.71 16.58 -57.17 -0.95 -22.66 16 20 O -0.93 -21.09 15.06 -65.83 -0.99 -22.08 16 21 N -0.99 -16.23 3.28 -113.28 -0.37 -16.60 16 22 C 0.12 1.71 6.43 -3.49 -0.02 1.68 16 23 C -0.14 -1.76 6.10 -26.38 -0.16 -1.92 16 24 C -0.11 -1.26 5.88 -26.68 -0.16 -1.42 16 25 C -0.14 -1.75 6.08 -26.61 -0.16 -1.91 16 26 C 0.13 1.74 6.36 -3.71 -0.02 1.71 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.17 3.76 4.63 -52.48 -0.24 3.51 16 31 H 0.30 6.20 8.31 -40.82 -0.34 5.86 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 1.35 6.99 -51.93 -0.36 0.99 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.26 7.27 -51.92 -0.38 0.88 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 351.68 15.07 5.30 5.30 Total: -1.00 -30.51 351.68 -6.99 -37.50 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.23 Total: 4.71 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -0.34 Total: -10.88 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.76 Total: -42.44 kcal Atomic # 8 Polarization: -62.08 SS G_CDS: -2.73 Total: -64.80 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -4.21 Total: 13.75 kcal Atomic # 16 Polarization: 57.39 SS G_CDS: -0.53 Total: 56.86 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.51 -6.99 -37.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049402084.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.083 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds