Wall clock time and date at job start Tue Mar 31 2020 05:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00204 * 2 1 4 4 H 1.48497 * 109.47199 * 240.00225 * 3 2 1 5 5 H 1.48496 * 109.47136 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46671 * 120.00140 * 3 2 1 7 7 C 1.37878 * 119.99406 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99353 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00256 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.46942 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99984 * 170.00719 * 10 9 7 12 12 C 1.53238 * 109.34127 * 187.25542 * 11 10 9 13 13 N 1.47075 * 108.52191 * 306.16939 * 12 11 10 14 14 C 1.34776 * 120.88186 * 231.18652 * 13 12 11 15 15 O 1.21707 * 119.99796 * 7.03350 * 14 13 12 16 16 C 1.46562 * 120.00339 * 187.02666 * 14 13 12 17 17 C 1.36597 * 125.98204 * 187.44582 * 16 14 13 18 18 C 1.40277 * 106.72985 * 180.16868 * 17 16 14 19 19 C 1.35309 * 107.11971 * 359.63572 * 18 17 16 20 20 Br 1.89098 * 125.63072 * 180.20768 * 19 18 17 21 21 O 1.33953 * 108.73858 * 0.22665 * 19 18 17 22 22 C 1.47082 * 118.24074 * 51.45594 * 13 12 11 23 23 C 1.46902 * 111.00151 * 294.30673 * 10 9 7 24 24 H 0.97005 * 119.99633 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46521 * 60.00606 * 9 7 2 26 26 H 1.08994 * 109.47629 * 300.00729 * 9 7 2 27 27 H 1.08997 * 109.49623 * 67.29408 * 11 10 9 28 28 H 1.09008 * 109.48906 * 307.20996 * 11 10 9 29 29 H 1.08999 * 109.63175 * 186.45573 * 12 11 10 30 30 H 1.09001 * 109.63062 * 65.87452 * 12 11 10 31 31 H 1.08004 * 126.63511 * 0.02754 * 17 16 14 32 32 H 1.07995 * 126.43815 * 179.90311 * 18 17 16 33 33 H 1.08997 * 109.62772 * 68.25065 * 22 13 12 34 34 H 1.08993 * 109.63088 * 188.83860 * 22 13 12 35 35 H 1.09002 * 109.49308 * 292.70214 * 23 10 9 36 36 H 1.08996 * 109.49492 * 52.78539 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2054 -3.6157 -0.0005 11 6 1.5209 -4.8935 0.2374 12 6 2.5634 -6.0033 0.4103 13 7 3.4613 -5.9863 -0.7544 14 6 3.7117 -7.1124 -1.4513 15 8 3.0963 -8.1322 -1.2013 16 6 4.7248 -7.1089 -2.5104 17 6 4.9771 -8.1290 -3.3831 18 6 6.0217 -7.6996 -4.2150 19 6 6.3529 -6.4472 -3.8244 20 35 7.7006 -5.3714 -4.6004 21 8 5.5687 -6.0954 -2.7969 22 6 4.0836 -4.7091 -1.1348 23 6 2.9766 -3.6491 -1.2504 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5566 -0.8904 26 1 0.6245 -2.5571 0.8895 27 1 0.8794 -5.1263 -0.6124 28 1 0.9157 -4.8191 1.1410 29 1 2.0628 -6.9695 0.4727 30 1 3.1390 -5.8266 1.3189 31 1 4.4717 -9.0827 -3.4232 32 1 6.4734 -8.2613 -5.0192 33 1 4.8025 -4.4104 -0.3719 34 1 4.5884 -4.8192 -2.0945 35 1 2.3148 -3.8993 -2.0796 36 1 3.4271 -2.6722 -1.4260 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051352616.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:15 Heat of formation + Delta-G solvation = 11.914259 kcal Electronic energy + Delta-G solvation = -21775.600010 eV Core-core repulsion = 18308.792015 eV Total energy + Delta-G solvation = -3466.807995 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 342.037 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.10277 -39.85728 -37.63367 -34.66062 -33.58101 -32.54989 -32.36380 -31.02869 -29.39875 -28.13539 -25.68741 -23.62024 -23.14373 -22.18485 -21.69617 -20.71445 -19.53517 -17.64231 -16.97702 -16.59940 -16.42950 -15.90505 -15.02148 -14.78679 -14.47442 -14.15756 -14.03159 -13.73960 -13.47005 -13.34022 -13.22376 -12.95317 -12.20670 -11.94711 -11.68584 -11.33154 -11.14320 -11.08044 -10.95099 -10.80725 -10.65793 -10.60249 -10.39314 -10.20187 -9.88673 -9.33195 -8.97621 -8.58988 -8.47756 -7.38449 -6.08321 -4.10602 0.44926 0.62425 1.86464 2.57160 2.96721 3.13563 3.29913 3.34583 3.36896 4.33309 4.36865 4.45043 4.76465 5.02106 5.11976 5.25007 5.28946 5.33567 5.39755 5.47619 5.59846 5.71975 5.83822 5.86585 5.98177 6.22104 6.29503 6.39676 6.43072 6.56163 7.17001 7.23713 7.30796 7.70687 7.91590 7.96955 8.07976 8.43681 8.96116 9.54051 11.02450 Molecular weight = 342.04amu Principal moments of inertia in cm(-1) A = 0.011976 B = 0.003477 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.535818 B = 8051.987962 C =10158.651007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.536 5.536 11 C 0.040 3.960 12 C 0.118 3.882 13 N -0.594 5.594 14 C 0.597 3.403 15 O -0.526 6.526 16 C -0.042 4.042 17 C -0.124 4.124 18 C -0.164 4.164 19 C -0.015 4.015 20 Br 0.058 6.942 21 O -0.137 6.137 22 C 0.100 3.900 23 C 0.052 3.948 24 H 0.263 0.737 25 H -0.008 1.008 26 H 0.033 0.967 27 H 0.029 0.971 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.169 0.831 32 H 0.166 0.834 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.026 0.974 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.197 -14.806 -9.658 23.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.550 4.550 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.089 4.089 12 C -0.004 4.004 13 N -0.325 5.325 14 C 0.384 3.616 15 O -0.405 6.405 16 C -0.096 4.096 17 C -0.145 4.145 18 C -0.186 4.186 19 C -0.145 4.145 20 Br 0.142 6.858 21 O -0.034 6.034 22 C -0.022 4.022 23 C -0.077 4.077 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.187 0.813 32 H 0.184 0.816 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.044 0.956 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 15.516 -14.422 -9.231 23.108 hybrid contribution -0.402 0.658 -0.646 1.006 sum 15.114 -13.764 -9.877 22.703 Atomic orbital electron populations 1.69949 1.06103 1.27008 1.50608 1.24987 0.94856 0.99346 0.95290 0.86553 0.79446 0.82692 0.78682 1.20235 1.21340 1.20111 1.21092 0.93432 0.89855 1.50618 0.91840 1.19728 0.89966 0.87090 0.96305 1.62103 1.28100 1.02742 1.33137 1.22417 0.94853 0.90440 1.01226 1.21901 0.91652 1.00011 0.86811 1.48187 1.46100 1.08410 1.29846 1.16638 0.81029 0.83977 0.79983 1.90866 1.49844 1.32472 1.67287 1.22424 0.96889 0.88314 1.01986 1.21964 0.97903 1.00257 0.94415 1.21707 0.99709 0.93956 1.03184 1.24464 0.98385 0.96608 0.95003 1.96915 1.42718 1.68780 1.77365 1.84426 1.38755 1.38652 1.41530 1.22535 0.96278 0.82048 1.01370 1.22410 0.94896 0.98955 0.91439 0.92784 0.99037 0.94924 0.95321 0.89700 0.88987 0.90284 0.81334 0.81598 0.90102 0.88741 0.95590 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.51 -13.84 8.41 -34.44 -0.29 -14.13 16 8 H 0.06 1.68 7.13 -52.48 -0.37 1.30 16 9 C 0.19 4.89 4.72 -4.98 -0.02 4.86 16 10 N -0.54 -11.03 4.62 -235.46 -1.09 -12.12 16 11 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 12 C 0.12 1.79 6.61 -3.61 -0.02 1.76 16 13 N -0.59 -9.20 3.00 -173.77 -0.52 -9.72 16 14 C 0.60 9.21 7.65 -12.90 -0.10 9.11 16 15 O -0.53 -9.10 16.33 5.18 0.08 -9.02 16 16 C -0.04 -0.56 6.77 -36.82 -0.25 -0.81 16 17 C -0.12 -1.36 10.63 -39.41 -0.42 -1.78 16 18 C -0.16 -1.53 10.82 -39.86 -0.43 -1.97 16 19 C -0.01 -0.16 7.80 29.69 0.23 0.07 16 20 Br 0.06 0.51 34.09 -68.01 -2.32 -1.80 16 21 O -0.14 -1.74 7.27 4.79 0.03 -1.70 16 22 C 0.10 1.52 6.26 -3.36 -0.02 1.50 16 23 C 0.05 0.97 5.47 -3.46 -0.02 0.95 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 25 H -0.01 -0.22 8.12 -51.93 -0.42 -0.65 16 26 H 0.03 0.88 7.97 -51.93 -0.41 0.46 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 1.42 7.99 -51.92 -0.41 1.01 16 29 H 0.09 1.33 7.04 -51.93 -0.37 0.97 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.17 1.59 8.06 -52.48 -0.42 1.17 16 32 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.10 1.34 4.37 -52.57 -0.23 1.11 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.10 1.96 6.67 -51.93 -0.35 1.61 16 LS Contribution 321.97 15.07 4.85 4.85 Total: -1.00 -30.24 321.97 -8.94 -39.18 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -4.24 Total: -2.06 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -1.46 Total: 1.73 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.87 Total: -47.26 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.12 Total: -10.72 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 35 Polarization: 0.51 SS G_CDS: -2.32 Total: -1.80 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.24 -8.94 -39.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051352616.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.098 kcal (2) G-P(sol) polarization free energy of solvation -30.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds