Wall clock time and date at job start Tue Mar 31 2020 05:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47339 * 2 1 4 4 C 1.50697 * 109.47299 * 120.00150 * 2 1 3 5 5 H 1.07991 * 120.00449 * 119.72229 * 4 2 1 6 6 C 1.37885 * 119.99686 * 300.00060 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48493 * 109.47326 * 90.00142 * 8 6 4 10 10 H 1.48506 * 109.46545 * 209.99892 * 8 6 4 11 11 H 1.48498 * 109.47210 * 329.99603 * 8 6 4 12 12 N 1.46904 * 109.47141 * 239.99987 * 2 1 3 13 13 C 1.46960 * 111.00020 * 183.80084 * 12 2 1 14 14 C 1.53052 * 109.36337 * 176.81232 * 13 12 2 15 15 N 1.46951 * 109.36447 * 58.40157 * 14 13 12 16 16 C 1.46904 * 110.99875 * 176.81084 * 15 14 13 17 17 C 1.50696 * 109.47307 * 313.79947 * 16 15 14 18 18 N 1.32365 * 118.51304 * 89.99699 * 17 16 15 19 19 C 1.32628 * 121.48949 * 179.97438 * 18 17 16 20 20 N 1.37838 * 120.91359 * 179.97438 * 19 18 17 21 21 C 1.41647 * 118.17334 * 359.97438 * 19 18 17 22 22 C 1.39927 * 122.12180 * 180.02562 * 21 19 18 23 23 C 1.36381 * 119.50359 * 179.97438 * 22 21 19 24 24 C 1.39215 * 120.89662 * 0.02562 * 23 22 21 25 25 C 1.36312 * 121.02374 * 0.02562 * 24 23 22 26 26 C 1.40148 * 119.58637 * 359.96427 * 25 24 23 27 27 N 1.31173 * 118.51249 * 269.73546 * 17 16 15 28 28 C 1.46960 * 110.88069 * 300.67823 * 15 14 13 29 29 C 1.46957 * 111.00210 * 60.00166 * 12 2 1 30 30 H 1.09007 * 109.46899 * 60.00345 * 1 2 3 31 31 H 1.08993 * 109.47037 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47084 * 300.00697 * 1 2 3 33 33 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.48947 * 296.77834 * 13 12 2 35 35 H 1.08997 * 109.49036 * 56.84055 * 13 12 2 36 36 H 1.09003 * 109.48695 * 298.43212 * 14 13 12 37 37 H 1.09002 * 109.48479 * 178.37147 * 14 13 12 38 38 H 1.09001 * 109.47071 * 73.80038 * 16 15 14 39 39 H 1.08999 * 109.46875 * 193.79521 * 16 15 14 40 40 H 0.97009 * 119.99931 * 359.97438 * 20 19 18 41 41 H 0.96998 * 120.00301 * 179.97438 * 20 19 18 42 42 H 1.07997 * 120.24564 * 0.02562 * 22 21 19 43 43 H 1.08004 * 119.55183 * 179.97438 * 23 22 21 44 44 H 1.08000 * 119.48507 * 180.02562 * 24 23 22 45 45 H 1.08005 * 120.20623 * 180.02562 * 25 24 23 46 46 H 1.09000 * 109.48947 * 299.35510 * 28 15 14 47 47 H 1.08996 * 109.50350 * 179.30212 * 28 15 14 48 48 H 1.09004 * 109.48804 * 303.15893 * 29 12 2 49 49 H 1.09004 * 109.48702 * 63.21735 * 29 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6495 -1.5910 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9476 0.8331 2.6034 8 14 2.3156 -1.1244 4.0079 9 1 3.6255 -0.5556 4.4149 10 1 1.3363 -0.9505 5.1107 11 1 2.4747 -2.5706 3.7106 12 7 2.0197 -0.6925 -1.1995 13 6 3.4859 -0.7914 -1.1888 14 6 3.9498 -1.5865 -2.4115 15 7 3.4786 -0.9201 -3.6336 16 6 3.9683 -1.6127 -4.8330 17 6 5.4366 -1.9130 -4.6754 18 7 5.7906 -3.0634 -4.1246 19 6 7.0657 -3.3883 -3.9579 20 7 7.4210 -4.5893 -3.3824 21 6 8.0522 -2.4671 -4.3875 22 6 9.4207 -2.7256 -4.2521 23 6 10.3249 -1.8008 -4.6847 24 6 9.9046 -0.6039 -5.2583 25 6 8.5789 -0.3218 -5.4033 26 6 7.6225 -1.2500 -4.9698 27 7 6.3060 -1.0249 -5.0951 28 6 2.0124 -0.8213 -3.6442 29 6 1.5485 -0.0262 -2.4216 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 0.7136 1.1647 3.4844 34 1 3.9181 0.2088 -1.2201 35 1 3.8096 -1.2994 -0.2804 36 1 3.5396 -2.5954 -2.3662 37 1 5.0386 -1.6364 -2.4211 38 1 3.4188 -2.5448 -4.9642 39 1 3.8190 -0.9771 -5.7059 40 1 6.7343 -5.2103 -3.0926 41 1 8.3576 -4.8136 -3.2671 42 1 9.7584 -3.6508 -3.8091 43 1 11.3814 -1.9993 -4.5802 44 1 10.6403 0.1122 -5.5934 45 1 8.2676 0.6107 -5.8505 46 1 1.5802 -1.8215 -3.6129 47 1 1.6885 -0.3135 -4.5526 48 1 0.4597 0.0237 -2.4119 49 1 1.9587 0.9828 -2.4668 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053606777.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:39 Heat of formation + Delta-G solvation = 94.379268 kcal Electronic energy + Delta-G solvation = -29774.888160 eV Core-core repulsion = 25930.194253 eV Total energy + Delta-G solvation = -3844.693907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.191 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.50628 -38.89324 -37.79300 -36.41728 -35.30582 -32.80839 -32.26868 -31.28915 -30.56646 -30.40969 -29.18100 -27.06035 -25.37443 -24.57476 -24.22351 -22.63092 -22.29650 -21.99045 -20.05174 -19.08970 -18.86276 -18.40840 -17.26001 -16.27916 -16.23199 -16.13428 -15.38914 -15.18823 -15.02267 -14.57753 -14.45407 -14.18152 -14.08137 -13.89899 -13.50622 -13.31764 -12.83801 -12.69326 -12.63913 -12.44377 -11.95589 -11.85523 -11.73898 -11.60770 -11.49913 -10.95554 -10.79102 -10.69121 -10.61113 -10.46332 -10.34056 -10.04343 -9.90919 -9.77756 -9.56398 -9.40063 -9.21601 -8.77752 -8.38265 -8.11703 -7.96758 -7.07675 -5.97070 -4.01136 0.26914 0.59316 1.81545 2.80021 2.93456 3.32233 3.38577 3.42567 3.81670 3.97207 4.11786 4.31579 4.39996 4.44011 4.50174 4.63578 4.94051 5.04567 5.05477 5.18157 5.34770 5.39690 5.44399 5.58289 5.67033 5.72150 5.76497 5.87196 5.91373 5.96620 6.08689 6.10358 6.16417 6.21343 6.33556 6.38280 6.55767 6.68719 6.71942 6.81178 6.84034 6.92606 7.11301 7.17740 7.29539 7.36934 7.40889 7.59828 7.80578 7.87494 8.27608 8.27761 8.38914 8.67536 9.05488 9.63508 11.09885 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.013021 B = 0.002822 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.926096 B = 9920.310251 C =10918.720820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.213 3.787 3 H -0.002 1.002 4 C -0.502 4.502 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.534 5.534 13 C 0.069 3.931 14 C 0.066 3.934 15 N -0.528 5.528 16 C 0.122 3.878 17 C 0.385 3.615 18 N -0.589 5.589 19 C 0.476 3.524 20 N -0.822 5.822 21 C -0.204 4.204 22 C -0.069 4.069 23 C -0.139 4.139 24 C -0.078 4.078 25 C -0.107 4.107 26 C 0.191 3.809 27 N -0.534 5.534 28 C 0.063 3.937 29 C 0.054 3.946 30 H 0.009 0.991 31 H 0.033 0.967 32 H 0.084 0.916 33 H 0.260 0.740 34 H 0.025 0.975 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.413 0.587 41 H 0.411 0.589 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.139 0.861 46 H 0.041 0.959 47 H 0.072 0.928 48 H 0.078 0.922 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.703 -8.140 -17.335 25.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.107 3.893 3 H 0.016 0.984 4 C -0.541 4.541 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.723 3.277 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.260 5.260 13 C -0.060 4.060 14 C -0.062 4.062 15 N -0.254 5.254 16 C -0.007 4.007 17 C 0.115 3.885 18 N -0.316 5.316 19 C 0.219 3.781 20 N -0.366 5.366 21 C -0.213 4.213 22 C -0.090 4.090 23 C -0.158 4.158 24 C -0.099 4.099 25 C -0.126 4.126 26 C 0.065 3.935 27 N -0.253 5.253 28 C -0.065 4.065 29 C -0.074 4.074 30 H 0.027 0.973 31 H 0.052 0.948 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.116 0.884 40 H 0.245 0.755 41 H 0.242 0.758 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.149 0.851 45 H 0.157 0.843 46 H 0.059 0.941 47 H 0.090 0.910 48 H 0.096 0.904 49 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 15.651 -7.683 -17.362 24.605 hybrid contribution 1.404 -1.006 1.270 2.143 sum 17.054 -8.689 -16.093 25.006 Atomic orbital electron populations 1.21824 0.97720 0.99537 0.99873 1.19214 0.92272 0.92002 0.85834 0.98422 1.21155 1.31030 1.12043 0.89858 0.92018 1.24928 0.95235 0.95108 0.98956 1.69898 1.37112 1.22915 1.23320 0.86549 0.78432 0.80085 0.82654 1.20842 1.21259 1.19895 1.62297 1.08523 1.52696 1.02461 1.21984 0.89270 0.98255 0.96481 1.22220 0.98406 0.96403 0.89187 1.62363 1.11053 1.50850 1.01144 1.20858 0.86074 0.98352 0.95462 1.22545 0.96638 0.83258 0.86072 1.67821 1.16603 1.22593 1.24611 1.18580 0.88810 0.85569 0.85175 1.42086 1.11609 1.17475 1.65399 1.18996 0.94811 0.98121 1.09337 1.20657 0.91203 0.99178 0.97931 1.20828 0.99816 0.94461 1.00707 1.20996 0.95737 0.96669 0.96498 1.20741 0.91558 0.99373 1.00976 1.18815 0.91149 0.91073 0.92498 1.68699 1.00573 1.32085 1.23922 1.22188 0.85910 0.99727 0.98673 1.22110 0.99973 0.95377 0.89989 0.97253 0.94762 0.89750 0.93038 0.95630 0.89584 0.93848 0.92241 0.92332 0.88371 0.75549 0.75778 0.85831 0.85461 0.85117 0.84272 0.94080 0.90964 0.90397 0.95217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.74 37.16 0.32 -2.96 16 2 C 0.21 5.55 2.06 -68.86 -0.14 5.41 16 3 H 0.00 -0.05 8.14 -51.93 -0.42 -0.48 16 4 C -0.50 -14.06 7.88 -34.44 -0.27 -14.33 16 5 H 0.06 1.73 6.42 -52.49 -0.34 1.39 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -25.92 11.33 55.43 0.63 -25.29 16 8 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.53 -12.09 4.57 -227.88 -1.04 -13.13 16 13 C 0.07 1.49 5.33 -3.76 -0.02 1.47 16 14 C 0.07 1.22 4.85 -3.77 -0.02 1.20 16 15 N -0.53 -8.91 4.85 -235.92 -1.14 -10.05 16 16 C 0.12 1.76 5.68 -4.98 -0.03 1.73 16 17 C 0.38 5.86 5.57 -157.23 -0.88 4.98 16 18 N -0.59 -8.42 9.12 -9.70 -0.09 -8.51 16 19 C 0.48 5.64 7.87 -154.98 -1.22 4.42 16 20 N -0.82 -6.13 8.98 31.45 0.28 -5.85 16 21 C -0.20 -2.39 5.75 -106.68 -0.61 -3.01 16 22 C -0.07 -0.58 9.54 -39.62 -0.38 -0.95 16 23 C -0.14 -1.03 9.96 -39.89 -0.40 -1.43 16 24 C -0.08 -0.63 9.95 -39.91 -0.40 -1.03 16 25 C -0.11 -1.16 10.01 -39.56 -0.40 -1.55 16 26 C 0.19 2.58 6.61 -84.85 -0.56 2.02 16 27 N -0.53 -8.25 10.32 -8.81 -0.09 -8.34 16 28 C 0.06 1.02 5.58 -3.77 -0.02 1.00 16 29 C 0.05 1.05 5.32 -3.77 -0.02 1.03 16 30 H 0.01 0.19 6.34 -51.92 -0.33 -0.14 16 31 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 2.30 6.08 -51.93 -0.32 1.98 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.09 1.98 6.14 -51.93 -0.32 1.66 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.06 1.12 6.13 -51.93 -0.32 0.80 16 38 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 39 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.41 2.77 8.95 -40.82 -0.37 2.40 16 41 H 0.41 1.80 7.09 -40.82 -0.29 1.51 16 42 H 0.12 0.62 6.59 -52.49 -0.35 0.27 16 43 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 44 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 46 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 48 H 0.08 1.47 6.14 -51.93 -0.32 1.15 16 49 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 381.62 15.07 5.75 5.75 Total: -1.00 -33.24 381.62 -13.00 -46.24 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -7.14 Total: 2.98 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -5.13 Total: -0.44 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -1.46 Total: -71.17 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.24 -13.00 -46.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053606777.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.622 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds