Wall clock time and date at job start Tue Mar 31 2020 05:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47101 * 2 1 4 4 C 1.50700 * 109.47076 * 240.00098 * 2 1 3 5 5 H 1.07999 * 120.00153 * 275.22359 * 4 2 1 6 6 C 1.37882 * 120.00181 * 95.22129 * 4 2 1 7 7 N 1.31512 * 120.00052 * 174.48479 * 6 4 2 8 8 Si 1.86804 * 119.99872 * 354.48334 * 6 4 2 9 9 H 1.48505 * 109.46860 * 84.91507 * 8 6 4 10 10 H 1.48494 * 109.47158 * 204.91134 * 8 6 4 11 11 H 1.48500 * 109.47237 * 324.91419 * 8 6 4 12 12 N 1.46895 * 109.47402 * 119.99808 * 2 1 3 13 13 C 1.46957 * 111.00183 * 295.00212 * 12 2 1 14 14 C 1.53052 * 109.38070 * 176.82097 * 13 12 2 15 15 N 1.46955 * 109.36698 * 58.39014 * 14 13 12 16 16 C 1.46896 * 111.00307 * 176.80812 * 15 14 13 17 17 C 1.50701 * 109.47266 * 169.99791 * 16 15 14 18 18 N 1.32365 * 118.51144 * 90.00545 * 17 16 15 19 19 C 1.32614 * 121.49007 * 179.97438 * 18 17 16 20 20 N 1.37849 * 120.91243 * 179.97438 * 19 18 17 21 21 C 1.41649 * 118.17879 * 359.97438 * 19 18 17 22 22 C 1.39917 * 122.12633 * 180.02562 * 21 19 18 23 23 C 1.36392 * 119.50564 * 179.97438 * 22 21 19 24 24 C 1.39213 * 120.89237 * 359.97438 * 23 22 21 25 25 C 1.36323 * 121.02426 * 0.02562 * 24 23 22 26 26 C 1.40142 * 119.58451 * 359.94920 * 25 24 23 27 27 N 1.31168 * 118.51378 * 269.73516 * 17 16 15 28 28 C 1.46952 * 110.87901 * 300.67850 * 15 14 13 29 29 C 1.46963 * 111.01811 * 171.18708 * 12 2 1 30 30 H 1.09006 * 109.47147 * 305.93950 * 1 2 3 31 31 H 1.08999 * 109.47751 * 65.93869 * 1 2 3 32 32 H 1.09003 * 109.47151 * 185.94221 * 1 2 3 33 33 H 0.96996 * 119.99856 * 179.97438 * 7 6 4 34 34 H 1.08991 * 109.49221 * 56.84240 * 13 12 2 35 35 H 1.08999 * 109.48597 * 296.79489 * 13 12 2 36 36 H 1.08999 * 109.48648 * 178.35507 * 14 13 12 37 37 H 1.09001 * 109.49095 * 298.40114 * 14 13 12 38 38 H 1.09003 * 109.47476 * 290.00274 * 16 15 14 39 39 H 1.09000 * 109.47039 * 50.00193 * 16 15 14 40 40 H 0.96995 * 120.00273 * 359.97438 * 20 19 18 41 41 H 0.97003 * 119.99561 * 179.97438 * 20 19 18 42 42 H 1.08000 * 120.25051 * 0.02562 * 22 21 19 43 43 H 1.07996 * 119.55672 * 179.97438 * 23 22 21 44 44 H 1.07993 * 119.48921 * 179.97438 * 24 23 22 45 45 H 1.08001 * 120.20602 * 179.97438 * 25 24 23 46 46 H 1.09001 * 109.49006 * 179.28673 * 28 15 14 47 47 H 1.08997 * 109.49224 * 299.32847 * 28 15 14 48 48 H 1.08992 * 109.46785 * 63.20386 * 29 12 2 49 49 H 1.08996 * 109.50530 * 303.15665 * 29 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1320 -1.7858 -1.2303 6 6 2.3645 0.0125 -2.3566 7 7 2.9044 -0.5934 -3.3914 8 14 2.0478 1.8527 -2.4123 9 1 3.1876 2.5702 -1.7867 10 1 1.9043 2.2877 -3.8248 11 1 0.7999 2.1629 -1.6695 12 7 2.0197 -0.6924 1.1994 13 6 1.6486 0.0395 2.4185 14 6 2.1064 -0.7525 3.6456 15 7 3.5602 -0.9565 3.5792 16 6 4.0501 -1.6485 4.7789 17 6 5.4856 -2.0577 4.5718 18 7 6.4409 -1.2131 4.9270 19 6 7.7233 -1.5128 4.7717 20 7 8.7085 -0.6239 5.1453 21 6 8.0532 -2.7712 4.2115 22 6 9.3786 -3.1723 4.0113 23 6 9.6352 -4.3967 3.4679 24 6 8.5965 -5.2520 3.1107 25 6 7.2947 -4.8908 3.2929 26 6 6.9951 -3.6400 3.8493 27 7 5.7319 -3.2369 4.0528 28 6 3.9313 -1.6889 2.3604 29 6 3.4735 -0.8969 1.1333 30 1 -0.3634 0.6032 0.8321 31 1 -0.3634 0.4190 -0.9383 32 1 -0.3633 -1.0222 0.1064 33 1 3.1377 -0.0849 -4.1838 34 1 0.5666 0.1670 2.4510 35 1 2.1302 1.0173 2.4163 36 1 1.8581 -0.1973 4.5501 37 1 1.6036 -1.7194 3.6628 38 1 3.9830 -0.9797 5.6370 39 1 3.4422 -2.5348 4.9607 40 1 8.4678 0.2345 5.5274 41 1 9.6426 -0.8570 5.0261 42 1 10.1925 -2.5176 4.2858 43 1 10.6579 -4.7069 3.3127 44 1 8.8256 -6.2163 2.6818 45 1 6.4993 -5.5646 3.0106 46 1 5.0133 -1.8164 2.3280 47 1 3.4498 -2.6667 2.3629 48 1 3.9760 0.0701 1.1163 49 1 3.7222 -1.4520 0.2288 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053606780.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:43 Heat of formation + Delta-G solvation = 93.002139 kcal Electronic energy + Delta-G solvation = -29934.110881 eV Core-core repulsion = 26089.357257 eV Total energy + Delta-G solvation = -3844.753623 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.191 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.47837 -38.90713 -37.79060 -36.45915 -35.32563 -32.67425 -32.26349 -31.26073 -30.78482 -30.45412 -29.55670 -27.30308 -25.37156 -24.48912 -24.26003 -22.67544 -22.21288 -21.99008 -19.97358 -19.09189 -18.81645 -18.35388 -17.25472 -16.89211 -16.24316 -16.13252 -15.35592 -15.17564 -14.95772 -14.53114 -14.35604 -14.30332 -14.04177 -13.84261 -13.74498 -13.21795 -12.75294 -12.64449 -12.59472 -12.47801 -12.35942 -11.91193 -11.82281 -11.75382 -11.52836 -11.22944 -10.93799 -10.73230 -10.66272 -10.48400 -10.37814 -10.09588 -9.87592 -9.73892 -9.64512 -9.35870 -9.19706 -9.01130 -8.49951 -8.11388 -7.94351 -7.22054 -6.05957 -4.03403 0.29659 0.64131 1.84198 2.84487 2.95261 3.29578 3.37843 3.41127 3.82338 3.99946 4.15613 4.35281 4.42451 4.43562 4.50570 4.68428 4.86609 4.98022 5.10074 5.22069 5.31314 5.40565 5.43943 5.58920 5.66807 5.68530 5.79785 5.85312 5.91841 5.95729 6.09736 6.14332 6.18679 6.22570 6.23927 6.41372 6.41958 6.49296 6.62903 6.70996 6.73023 6.81243 6.85414 6.90879 7.08544 7.28528 7.31539 7.39090 7.46360 7.66005 8.10448 8.21066 8.29602 8.71185 9.04175 9.58561 11.06962 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.012693 B = 0.003036 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.426338 B = 9218.941105 C =10065.179831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.181 3.819 3 H -0.001 1.001 4 C -0.503 4.503 5 H 0.081 0.919 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.871 3.129 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.264 1.264 12 N -0.529 5.529 13 C 0.052 3.948 14 C 0.064 3.936 15 N -0.529 5.529 16 C 0.122 3.878 17 C 0.385 3.615 18 N -0.579 5.579 19 C 0.475 3.525 20 N -0.823 5.823 21 C -0.204 4.204 22 C -0.071 4.071 23 C -0.138 4.138 24 C -0.077 4.077 25 C -0.106 4.106 26 C 0.192 3.808 27 N -0.543 5.543 28 C 0.064 3.936 29 C 0.073 3.927 30 H 0.020 0.980 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.263 0.737 34 H 0.075 0.925 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.096 0.904 39 H 0.061 0.939 40 H 0.412 0.588 41 H 0.411 0.589 42 H 0.123 0.877 43 H 0.128 0.872 44 H 0.132 0.868 45 H 0.140 0.860 46 H 0.062 0.938 47 H 0.046 0.954 48 H 0.023 0.977 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.430 -4.415 19.723 24.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.074 3.926 3 H 0.016 0.984 4 C -0.541 4.541 5 H 0.099 0.901 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.698 3.302 9 H -0.205 1.205 10 H -0.215 1.215 11 H -0.188 1.188 12 N -0.254 5.254 13 C -0.077 4.077 14 C -0.064 4.064 15 N -0.256 5.256 16 C -0.007 4.007 17 C 0.115 3.885 18 N -0.306 5.306 19 C 0.218 3.782 20 N -0.367 5.367 21 C -0.212 4.212 22 C -0.091 4.091 23 C -0.157 4.157 24 C -0.098 4.098 25 C -0.125 4.125 26 C 0.066 3.934 27 N -0.263 5.263 28 C -0.064 4.064 29 C -0.056 4.056 30 H 0.039 0.961 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.047 0.953 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.114 0.886 39 H 0.079 0.921 40 H 0.243 0.757 41 H 0.242 0.758 42 H 0.141 0.859 43 H 0.146 0.854 44 H 0.150 0.850 45 H 0.158 0.842 46 H 0.080 0.920 47 H 0.064 0.936 48 H 0.042 0.958 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.473 -4.249 19.609 23.625 hybrid contribution 1.225 1.169 -0.251 1.712 sum 13.697 -3.080 19.358 23.913 Atomic orbital electron populations 1.21967 0.97956 1.00377 0.98721 1.19633 0.92079 0.92063 0.88822 0.98363 1.20897 1.42869 0.95841 0.94531 0.90146 1.24972 0.94322 0.97873 0.95788 1.69899 1.41880 1.36277 1.05477 0.86972 0.79504 0.86645 0.77049 1.20510 1.21486 1.18847 1.62263 1.12569 1.48760 1.01811 1.22140 0.99912 0.95150 0.90486 1.22153 0.86289 0.99658 0.98346 1.62366 1.13822 1.48051 1.01314 1.20843 0.86727 0.98061 0.95104 1.22533 0.95135 0.84364 0.86495 1.67730 0.98407 1.36430 1.28053 1.18607 0.88179 0.86193 0.85270 1.42063 1.06668 1.19671 1.68270 1.18985 0.96249 0.96559 1.09450 1.20640 0.94178 0.96636 0.97667 1.20835 0.99630 0.94389 1.00801 1.21008 0.92280 0.99656 0.96881 1.20763 0.97287 0.94758 0.99729 1.18766 0.87711 0.93756 0.93164 1.68753 1.20290 1.17663 1.19559 1.22267 0.99295 0.95897 0.88975 1.21965 0.88021 0.98553 0.97016 0.96075 0.93297 0.92822 0.92684 0.90686 0.95261 0.91000 0.93933 0.88610 0.92113 0.75665 0.75798 0.85872 0.85449 0.85048 0.84193 0.91985 0.93593 0.95844 0.88378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.72 37.15 0.32 -2.57 16 2 C 0.18 4.40 1.66 -68.87 -0.11 4.29 16 3 H 0.00 -0.03 5.73 -51.93 -0.30 -0.33 16 4 C -0.50 -14.18 7.27 -34.44 -0.25 -14.43 16 5 H 0.08 2.50 7.88 -52.49 -0.41 2.08 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 8 Si 0.87 21.93 26.40 -169.99 -4.49 17.44 16 9 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 11 H -0.26 -6.36 6.43 56.52 0.36 -6.00 16 12 N -0.53 -11.60 4.57 -227.89 -1.04 -12.64 16 13 C 0.05 0.95 5.40 -3.77 -0.02 0.93 16 14 C 0.06 0.99 5.58 -3.77 -0.02 0.97 16 15 N -0.53 -8.84 4.85 -235.91 -1.14 -9.99 16 16 C 0.12 1.75 5.68 -4.98 -0.03 1.72 16 17 C 0.38 5.93 5.57 -157.24 -0.88 5.05 16 18 N -0.58 -8.43 10.31 -9.70 -0.10 -8.53 16 19 C 0.47 5.72 7.87 -154.98 -1.22 4.50 16 20 N -0.82 -6.08 8.98 31.45 0.28 -5.80 16 21 C -0.20 -2.47 5.75 -106.68 -0.61 -3.09 16 22 C -0.07 -0.62 9.54 -39.62 -0.38 -1.00 16 23 C -0.14 -1.10 9.96 -39.88 -0.40 -1.50 16 24 C -0.08 -0.69 9.95 -39.91 -0.40 -1.08 16 25 C -0.11 -1.23 10.01 -39.56 -0.40 -1.63 16 26 C 0.19 2.70 6.61 -84.85 -0.56 2.14 16 27 N -0.54 -8.54 9.14 -8.81 -0.08 -8.62 16 28 C 0.06 1.21 4.86 -3.77 -0.02 1.19 16 29 C 0.07 1.61 5.27 -3.76 -0.02 1.59 16 30 H 0.02 0.40 6.75 -51.93 -0.35 0.05 16 31 H 0.05 1.10 7.16 -51.93 -0.37 0.72 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.07 1.28 6.42 -51.93 -0.33 0.95 16 35 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 40 H 0.41 2.61 8.95 -40.82 -0.37 2.25 16 41 H 0.41 1.79 7.09 -40.82 -0.29 1.50 16 42 H 0.12 0.65 6.59 -52.49 -0.35 0.31 16 43 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 44 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 46 H 0.06 1.22 6.14 -51.93 -0.32 0.90 16 47 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 48 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.10 2.43 6.62 -51.93 -0.34 2.09 16 LS Contribution 380.92 15.07 5.74 5.74 Total: -1.00 -34.06 380.92 -12.39 -46.45 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.25 Total: 3.52 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -5.09 Total: -0.92 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -1.31 Total: -72.23 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.49 Total: 17.44 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.06 -12.39 -46.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053606780.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.455 kcal (2) G-P(sol) polarization free energy of solvation -34.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds