Wall clock time and date at job start Tue Mar 31 2020 06:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.47206 * 109.47021 * 120.00065 * 2 1 3 5 5 C 2.64598 * 109.47129 * 120.00201 * 2 1 3 6 6 C 4.11804 * 109.47090 * 120.00152 * 2 1 3 7 7 N 1.46894 * 109.47139 * 109.74312 * 6 5 4 8 8 C 1.46843 * 111.00612 * 66.04347 * 7 6 5 9 9 C 1.53033 * 109.52796 * 174.16244 * 8 7 6 10 10 C 1.53114 * 109.27653 * 59.17712 * 9 8 7 11 11 C 1.53115 * 109.16285 * 302.34509 * 10 9 8 12 12 C 1.46854 * 110.99674 * 301.83237 * 7 6 5 13 13 H 1.08992 * 109.46071 * 65.82418 * 12 7 6 14 14 C 1.50695 * 109.46332 * 305.85747 * 12 7 6 15 15 C 1.38670 * 120.42125 * 140.00323 * 14 12 7 16 16 C 1.38627 * 118.42478 * 180.02562 * 15 14 12 17 17 C 1.38229 * 119.15838 * 359.97438 * 16 15 14 18 18 N 1.31854 * 120.76675 * 0.02562 * 17 16 15 19 19 C 1.31891 * 121.72254 * 359.70022 * 18 17 16 20 20 O 1.42900 * 109.47116 * 239.99871 * 2 1 3 21 21 C 1.42900 * 113.99691 * 59.99650 * 20 2 1 22 22 C 1.50701 * 109.47176 * 179.97438 * 21 20 2 23 23 H 1.08001 * 119.99889 * 0.02562 * 22 21 20 24 24 C 1.37879 * 120.00217 * 180.02562 * 22 21 20 25 25 N 1.31516 * 119.99966 * 180.02562 * 24 22 21 26 26 Si 1.86792 * 119.99860 * 359.97438 * 24 22 21 27 27 H 1.48508 * 109.46858 * 90.00279 * 26 24 22 28 28 H 1.48501 * 109.47186 * 210.00191 * 26 24 22 29 29 H 1.48496 * 109.47635 * 330.00516 * 26 24 22 30 30 H 1.09004 * 109.46733 * 299.99664 * 1 2 3 31 31 H 1.08992 * 109.47068 * 59.99393 * 1 2 3 32 32 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47045 * 300.00068 * 3 2 1 35 35 H 1.09000 * 109.47140 * 59.99976 * 3 2 1 36 36 H 1.09001 * 109.47046 * 229.74167 * 6 5 4 37 37 H 1.08996 * 109.47170 * 349.73467 * 6 5 4 38 38 H 1.09002 * 109.46040 * 294.17924 * 8 7 6 39 39 H 1.09006 * 109.46219 * 54.14152 * 8 7 6 40 40 H 1.08998 * 109.50217 * 179.12067 * 9 8 7 41 41 H 1.09003 * 109.50143 * 299.23947 * 9 8 7 42 42 H 1.08996 * 109.52181 * 62.25727 * 10 9 8 43 43 H 1.09000 * 109.52153 * 182.43944 * 10 9 8 44 44 H 1.09002 * 109.50296 * 177.59344 * 11 10 9 45 45 H 1.08993 * 109.50910 * 297.67568 * 11 10 9 46 46 H 1.08001 * 120.78683 * 0.02562 * 15 14 12 47 47 H 1.08004 * 120.42135 * 180.02562 * 16 15 14 48 48 H 1.08002 * 119.61574 * 179.97438 * 17 16 15 49 49 H 1.07997 * 119.61419 * 180.31672 * 19 18 17 50 50 H 1.08995 * 109.47792 * 300.00114 * 21 20 2 51 51 H 1.09008 * 109.46914 * 60.00726 * 21 20 2 52 52 H 0.96998 * 119.99603 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0207 -0.6940 1.2019 5 6 2.4120 -1.2474 2.1604 6 6 2.9027 -1.9414 3.3623 7 7 4.0623 -2.7711 3.0095 8 6 5.1997 -1.9385 2.5981 9 6 6.4288 -2.8235 2.3791 10 6 6.1169 -3.8636 1.2997 11 6 4.8990 -4.6855 1.7307 12 6 3.7142 -3.7465 1.9683 13 1 3.4760 -3.2210 1.0436 14 6 2.5184 -4.5492 2.4118 15 6 1.5207 -4.8806 1.5077 16 6 0.4388 -5.6198 1.9604 17 6 0.3913 -5.9998 3.2886 18 7 1.3586 -5.6667 4.1205 19 6 2.4050 -4.9689 3.7235 20 8 2.0064 -0.6737 -1.1668 21 6 1.5846 -0.0774 -2.3950 22 6 2.1419 -0.8645 -3.5530 23 1 2.7564 -1.7335 -3.3693 24 6 1.8674 -0.4753 -4.8469 25 7 2.3534 -1.1625 -5.8574 26 14 0.8041 1.0272 -5.1646 27 1 1.6651 2.2343 -5.2479 28 1 0.0706 0.8530 -6.4440 29 1 -0.1688 1.1890 -4.0544 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 3.1964 -1.2064 4.1118 37 1 2.1118 -2.5743 3.7647 38 1 4.9545 -1.4215 1.6704 39 1 5.4137 -1.2058 3.3763 40 1 7.2687 -2.2070 2.0587 41 1 6.6829 -3.3302 3.3102 42 1 5.9008 -3.3582 0.3585 43 1 6.9748 -4.5236 1.1711 44 1 4.6459 -5.3994 0.9468 45 1 5.1292 -5.2221 2.6510 46 1 1.5848 -4.5701 0.4752 47 1 -0.3564 -5.8960 1.2838 48 1 -0.4483 -6.5754 3.6493 49 1 3.1801 -4.7191 4.4328 50 1 0.4958 -0.0790 -2.4447 51 1 1.9492 0.9487 -2.4447 52 1 2.1606 -0.8885 -6.7677 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055236087.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:36 Heat of formation + Delta-G solvation = 37.364820 kcal Electronic energy + Delta-G solvation = -30577.376248 eV Core-core repulsion = 26736.031691 eV Total energy + Delta-G solvation = -3841.344557 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.68118 -38.91165 -38.33646 -34.72755 -33.45492 -33.23225 -32.37149 -31.91250 -30.66880 -29.34342 -28.15208 -27.17259 -27.00244 -24.21514 -23.68934 -23.23622 -22.66862 -21.50545 -20.56634 -19.65459 -17.76819 -17.19323 -16.57329 -16.38662 -16.00880 -15.53167 -15.35522 -14.97060 -14.88903 -14.57107 -14.26545 -14.16222 -14.07573 -13.65297 -13.42109 -13.19659 -13.09164 -13.04490 -13.00656 -12.77639 -12.44241 -12.29052 -11.78669 -11.75838 -11.74301 -11.36755 -11.24879 -11.10691 -10.98903 -10.85026 -10.79905 -10.72161 -10.56186 -10.14251 -9.86637 -9.78641 -9.73971 -9.47463 -9.17041 -8.96984 -8.90586 -8.63924 -8.52742 -6.18927 -4.18218 1.05881 1.26974 2.65398 2.85678 3.17992 3.25285 3.25883 3.68654 3.84191 4.16521 4.28104 4.35258 4.61001 4.73134 4.86392 4.86932 4.91846 5.00260 5.02994 5.05918 5.11778 5.14940 5.15487 5.29151 5.37222 5.43678 5.49029 5.51915 5.54636 5.59566 5.63466 5.74550 5.74918 5.80583 5.85376 5.89096 5.91493 5.95165 6.01288 6.07611 6.13197 6.17324 6.24777 6.30120 6.34010 6.42232 6.57126 6.66388 6.87021 6.91708 6.92886 7.50749 7.73636 7.90810 7.93504 8.56377 8.91333 9.39619 10.94009 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010402 B = 0.003238 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.025346 B = 8644.859637 C = 9057.159063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.217 3.783 3 C -0.171 4.171 4 C -0.128 4.128 5 C -0.222 4.222 6 C 0.168 3.832 7 N -0.518 5.518 8 C 0.052 3.948 9 C -0.115 4.115 10 C -0.125 4.125 11 C -0.105 4.105 12 C 0.124 3.876 13 H 0.067 0.933 14 C -0.125 4.125 15 C -0.065 4.065 16 C -0.171 4.171 17 C 0.089 3.911 18 N -0.490 5.490 19 C 0.115 3.885 20 O -0.364 6.364 21 C 0.166 3.834 22 C -0.519 4.519 23 H 0.081 0.919 24 C 0.075 3.925 25 N -0.893 5.893 26 Si 0.872 3.128 27 H -0.273 1.273 28 H -0.281 1.281 29 H -0.265 1.265 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.136 0.864 47 H 0.134 0.866 48 H 0.152 0.848 49 H 0.161 0.839 50 H 0.009 0.991 51 H 0.004 0.996 52 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.274 -3.805 19.924 20.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.177 3.823 3 C -0.228 4.228 4 C -0.130 4.130 5 C -0.223 4.223 6 C 0.041 3.959 7 N -0.240 5.240 8 C -0.076 4.076 9 C -0.152 4.152 10 C -0.162 4.162 11 C -0.142 4.142 12 C 0.016 3.984 13 H 0.085 0.915 14 C -0.127 4.127 15 C -0.091 4.091 16 C -0.191 4.191 17 C -0.067 4.067 18 N -0.198 5.198 19 C -0.042 4.042 20 O -0.284 6.284 21 C 0.091 3.909 22 C -0.557 4.557 23 H 0.099 0.901 24 C -0.128 4.128 25 N -0.532 5.532 26 Si 0.699 3.301 27 H -0.198 1.198 28 H -0.207 1.207 29 H -0.190 1.190 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.154 0.846 47 H 0.152 0.848 48 H 0.169 0.831 49 H 0.179 0.821 50 H 0.026 0.974 51 H 0.021 0.979 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.505 -4.521 21.026 21.559 hybrid contribution -1.054 1.811 -2.178 3.022 sum 0.451 -2.710 18.848 19.047 Atomic orbital electron populations 1.22356 0.94865 1.03105 1.02449 1.17961 0.92278 0.89843 0.82214 1.22361 1.02422 0.95572 1.02446 1.21942 0.98169 0.98474 0.94430 1.23291 1.01695 0.99470 0.97890 1.19361 0.92467 0.94047 0.90060 1.62406 1.05238 1.15624 1.40732 1.22143 0.90325 0.94954 1.00168 1.21575 0.96744 0.97515 0.99395 1.21611 0.97724 0.97906 0.98982 1.21600 0.93594 0.97255 1.01792 1.20543 0.92077 0.92089 0.93725 0.91546 1.20761 0.96614 0.99959 0.95364 1.21628 0.92391 0.94670 1.00435 1.22132 0.99410 1.00021 0.97551 1.22730 0.96800 0.97103 0.90099 1.67745 1.01924 1.11987 1.38189 1.22692 0.95085 0.92506 0.93961 1.88059 1.74137 1.53487 1.12730 1.20705 0.94545 0.93863 0.81743 1.20837 1.32705 1.14072 0.88105 0.90060 1.24737 0.95631 0.96760 0.95622 1.69866 1.44838 1.39568 0.98879 0.86904 0.81246 0.83626 0.78356 1.19817 1.20654 1.19016 0.92092 0.90947 0.91636 0.91612 0.90989 0.92065 0.88659 0.88780 0.93711 0.90515 0.91417 0.91153 0.91547 0.91553 0.91307 0.91037 0.84626 0.84842 0.83109 0.82149 0.97364 0.97854 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 8.21 37.16 0.30 -2.46 16 2 C 0.22 3.96 1.04 -93.40 -0.10 3.86 16 3 C -0.17 -2.74 8.21 37.16 0.30 -2.43 16 4 C -0.13 -2.20 12.16 -37.12 -0.45 -2.65 16 5 C -0.22 -3.32 10.98 -37.12 -0.41 -3.73 16 6 C 0.17 1.95 5.36 -6.61 -0.04 1.91 16 7 N -0.52 -5.79 4.08 -231.58 -0.94 -6.74 16 8 C 0.05 0.57 5.13 -3.84 -0.02 0.55 16 9 C -0.11 -1.11 6.09 -26.65 -0.16 -1.27 16 10 C -0.12 -1.33 6.00 -26.61 -0.16 -1.49 16 11 C -0.10 -1.15 5.35 -26.65 -0.14 -1.29 16 12 C 0.12 1.54 1.61 -68.87 -0.11 1.43 16 13 H 0.07 1.05 7.16 -51.93 -0.37 0.68 16 14 C -0.12 -1.53 3.78 -104.48 -0.40 -1.92 16 15 C -0.06 -0.83 9.82 -39.28 -0.39 -1.21 16 16 C -0.17 -1.91 10.11 -39.44 -0.40 -2.31 16 17 C 0.09 0.98 11.18 -17.55 -0.20 0.78 16 18 N -0.49 -6.08 10.36 -13.25 -0.14 -6.22 16 19 C 0.11 1.35 9.08 -17.55 -0.16 1.19 16 20 O -0.36 -8.43 9.93 -35.23 -0.35 -8.78 16 21 C 0.17 4.08 3.96 36.01 0.14 4.22 16 22 C -0.52 -15.09 9.99 -34.44 -0.34 -15.43 16 23 H 0.08 2.60 8.06 -52.49 -0.42 2.18 16 24 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 25 N -0.89 -27.06 13.96 55.43 0.77 -26.28 16 26 Si 0.87 20.82 27.47 -169.99 -4.67 16.15 16 27 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.19 6.54 -51.93 -0.34 0.85 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 1.17 6.54 -51.93 -0.34 0.83 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.10 0.92 8.06 -51.93 -0.42 0.50 16 37 H 0.09 1.10 6.01 -51.93 -0.31 0.78 16 38 H 0.04 0.62 7.48 -51.93 -0.39 0.23 16 39 H 0.08 0.74 8.06 -51.93 -0.42 0.32 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 47 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 48 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 49 H 0.16 1.70 7.73 -52.49 -0.41 1.30 16 50 H 0.01 0.21 5.47 -51.93 -0.28 -0.08 16 51 H 0.00 0.09 5.84 -51.92 -0.30 -0.21 16 52 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 410.96 15.07 6.19 6.19 Total: -1.00 -31.73 410.96 -10.61 -42.35 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -8.67 Total: 3.53 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -2.81 Total: -20.20 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: -0.31 Total: -39.24 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.35 Total: -8.78 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.15 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.73 -10.61 -42.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055236087.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.711 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds