Wall clock time and date at job start Tue Mar 31 2020 07:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39872 * 125.89418 * 2 1 4 4 C 1.35318 * 107.91585 * 179.71922 * 3 2 1 5 5 C 1.50705 * 126.12493 * 180.26504 * 4 3 2 6 6 N 1.34943 * 107.74762 * 0.42346 * 4 3 2 7 7 C 1.46502 * 126.03712 * 179.83645 * 6 4 3 8 8 C 1.50706 * 109.47253 * 269.71786 * 7 6 4 9 9 O 1.21280 * 119.99713 * 0.02562 * 8 7 6 10 10 N 1.34769 * 120.00058 * 179.97438 * 8 7 6 11 11 C 1.39916 * 120.00308 * 184.62909 * 10 8 7 12 12 C 1.38937 * 120.04085 * 324.64935 * 11 10 8 13 13 C 1.38121 * 120.03912 * 180.29260 * 12 11 10 14 14 C 1.38214 * 120.12352 * 359.95887 * 13 12 11 15 15 C 1.38764 * 120.08722 * 0.04172 * 14 13 12 16 16 O 1.35897 * 120.01830 * 179.97438 * 15 14 13 17 17 C 1.42903 * 117.00364 * 0.02562 * 16 15 14 18 18 C 1.53000 * 109.47302 * 180.02562 * 17 16 15 19 19 C 1.50695 * 109.47199 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99654 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99924 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00066 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99737 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47300 * 89.99970 * 23 21 19 25 25 H 1.48498 * 109.46993 * 209.99412 * 23 21 19 26 26 H 1.48499 * 109.47037 * 329.99266 * 23 21 19 27 27 C 1.38627 * 119.95748 * 359.97438 * 15 14 13 28 28 N 1.30831 * 125.90173 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46744 * 269.99231 * 1 2 3 30 30 H 1.09000 * 109.47421 * 29.99463 * 1 2 3 31 31 H 1.09000 * 109.46691 * 149.99502 * 1 2 3 32 32 H 1.08002 * 126.03903 * 359.97438 * 3 2 1 33 33 H 1.08994 * 109.47095 * 270.18839 * 5 4 3 34 34 H 1.08997 * 109.47016 * 30.19217 * 5 4 3 35 35 H 1.09007 * 109.46727 * 150.18701 * 5 4 3 36 36 H 1.09003 * 109.46730 * 149.71997 * 7 6 4 37 37 H 1.08997 * 109.47383 * 29.72107 * 7 6 4 38 38 H 0.97009 * 120.00146 * 4.63291 * 10 8 7 39 39 H 1.07994 * 119.97561 * 0.27683 * 12 11 10 40 40 H 1.08001 * 119.93529 * 179.97438 * 13 12 11 41 41 H 1.08008 * 119.95703 * 180.02562 * 14 13 12 42 42 H 1.08997 * 109.46627 * 299.99937 * 17 16 15 43 43 H 1.08991 * 109.46965 * 60.00202 * 17 16 15 44 44 H 1.09002 * 109.47027 * 299.99948 * 18 17 16 45 45 H 1.08997 * 109.47083 * 59.99610 * 18 17 16 46 46 H 0.97001 * 119.99707 * 180.02562 * 22 21 19 47 47 H 1.08002 * 120.06052 * 180.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 0.0063 5 6 4.8350 1.5991 0.0142 6 7 3.6088 -0.6340 0.0007 7 6 4.7900 -1.5006 0.0011 8 6 5.1958 -1.7975 -1.4197 9 8 4.5610 -1.3307 -2.3417 10 7 6.2645 -2.5808 -1.6655 11 6 6.6996 -2.7781 -2.9806 12 6 5.7755 -2.8509 -4.0155 13 6 6.2047 -3.0516 -5.3129 14 6 7.5536 -3.1797 -5.5853 15 6 8.4811 -3.1078 -4.5556 16 8 9.8071 -3.2344 -4.8250 17 6 10.1752 -3.4390 -6.1906 18 6 11.6968 -3.5583 -6.2963 19 6 12.0850 -3.7734 -7.7364 20 1 11.3225 -3.8208 -8.4999 21 6 13.4134 -3.9108 -8.0792 22 7 14.3417 -3.8536 -7.1495 23 14 13.8944 -4.1782 -9.8643 24 1 14.1183 -2.8642 -10.5189 25 1 15.1424 -4.9807 -9.9258 26 1 12.8051 -4.9024 -10.5674 27 6 8.0542 -2.9067 -3.2522 28 7 2.2742 -1.0598 0.0005 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3633 -0.8900 -0.5139 32 1 1.9922 2.1599 -0.0004 33 1 5.1329 1.8164 -1.0114 34 1 4.6057 2.5308 0.5312 35 1 5.6494 1.0889 0.5288 36 1 4.5562 -2.4332 0.5146 37 1 5.6092 -0.9981 0.5154 38 1 6.7321 -3.0080 -0.9307 39 1 4.7210 -2.7507 -3.8052 40 1 5.4848 -3.1084 -6.1160 41 1 7.8863 -3.3362 -6.6009 42 1 9.7129 -4.3552 -6.5580 43 1 9.8341 -2.5945 -6.7892 44 1 12.1595 -2.6423 -5.9287 45 1 12.0375 -4.4030 -5.6977 46 1 15.2763 -3.9499 -7.3908 47 1 8.7747 -2.8501 -2.4496 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055569677.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:41 Heat of formation + Delta-G solvation = 24.431678 kcal Electronic energy + Delta-G solvation = -28032.947440 eV Core-core repulsion = 23989.783054 eV Total energy + Delta-G solvation = -4043.164386 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.71917 -40.64390 -39.36699 -37.21662 -34.80459 -34.46807 -33.39626 -32.42691 -30.97435 -30.56359 -29.56428 -28.85874 -27.35355 -26.39145 -25.09366 -22.86958 -22.68453 -21.24466 -20.71012 -20.41063 -19.63506 -18.36273 -17.93092 -17.07358 -16.35800 -16.18350 -15.86852 -15.57713 -15.38241 -15.34245 -15.05091 -14.50102 -14.25806 -14.23431 -14.11730 -13.61710 -13.57094 -13.30083 -13.11844 -12.87477 -12.77911 -12.67297 -12.49842 -12.34700 -12.16017 -11.97589 -11.69275 -11.41750 -10.96543 -10.82192 -10.79061 -10.59683 -10.45371 -10.23559 -9.86091 -9.69166 -9.34530 -9.32500 -8.76600 -8.49471 -8.41715 -7.85007 -6.13232 -4.17936 1.21252 1.46272 1.61981 1.95298 2.18169 2.52378 2.72168 3.25755 3.31879 3.34639 3.79973 3.86597 4.03664 4.13772 4.26222 4.39152 4.43073 4.58012 4.69135 4.94992 5.02028 5.11526 5.23410 5.29050 5.30556 5.31864 5.35974 5.40504 5.43505 5.52787 5.59020 5.60215 5.69751 5.91199 5.99674 6.00154 6.18926 6.26655 6.40691 6.48734 6.57084 6.62886 6.68641 6.91959 7.03958 7.45594 7.46147 7.60062 7.68241 7.77179 8.00030 8.20508 8.87564 9.46642 10.98270 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.028690 B = 0.001606 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.717770 B =17434.608965 C =17719.830689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.077 3.923 3 C -0.271 4.271 4 C 0.098 3.902 5 C -0.096 4.096 6 N -0.360 5.360 7 C 0.118 3.882 8 C 0.494 3.506 9 O -0.496 6.496 10 N -0.667 5.667 11 C 0.173 3.827 12 C -0.167 4.167 13 C -0.063 4.063 14 C -0.220 4.220 15 C 0.162 3.838 16 O -0.314 6.314 17 C 0.065 3.935 18 C 0.025 3.975 19 C -0.528 4.528 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.185 4.185 28 N -0.289 5.289 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.147 0.853 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.412 0.588 39 H 0.133 0.867 40 H 0.125 0.875 41 H 0.133 0.867 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.263 0.737 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.281 7.734 18.944 30.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 C -0.300 4.300 4 C -0.028 4.028 5 C -0.154 4.154 6 N -0.142 5.142 7 C -0.009 4.009 8 C 0.279 3.721 9 O -0.368 6.368 10 N -0.313 5.313 11 C 0.079 3.921 12 C -0.187 4.187 13 C -0.082 4.082 14 C -0.239 4.239 15 C 0.114 3.886 16 O -0.227 6.227 17 C -0.009 4.009 18 C -0.012 4.012 19 C -0.566 4.566 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.527 5.527 23 Si 0.726 3.274 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.206 4.206 28 N -0.111 5.111 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.165 0.835 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.248 0.752 39 H 0.151 0.849 40 H 0.143 0.857 41 H 0.150 0.850 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.073 0.927 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -23.237 6.747 18.476 30.444 hybrid contribution 0.675 0.424 -0.880 1.187 sum -22.563 7.172 17.597 29.498 Atomic orbital electron populations 1.20175 0.86631 1.03394 1.02829 1.22316 0.96918 0.90781 0.98940 1.21090 0.90872 0.99765 1.18280 1.21074 0.97498 0.84197 1.00081 1.20506 0.92815 0.98256 1.03821 1.47765 1.04551 1.03660 1.58209 1.21369 0.86763 0.97766 0.94970 1.20968 0.80503 0.78766 0.91848 1.90794 1.51082 1.49680 1.45243 1.43311 1.31316 1.48953 1.07740 1.17241 0.91757 0.99479 0.83603 1.21022 0.99843 1.05798 0.92086 1.20813 0.94983 0.96283 0.96127 1.21429 0.93626 1.09216 0.99668 1.18805 0.84280 0.92673 0.92796 1.86161 1.19037 1.85396 1.32127 1.23366 1.00839 0.99293 0.77417 1.19128 0.85653 0.98746 0.97646 1.20972 0.92421 1.50986 0.92196 0.92326 1.24984 0.96425 0.94955 0.97772 1.69974 1.00656 1.49360 1.32743 0.86482 0.78096 0.78298 0.84485 1.20483 1.21034 1.19750 1.19980 0.93553 1.11458 0.95642 1.77327 0.85722 1.22578 1.25426 0.90571 0.90399 0.90929 0.83525 0.89795 0.89377 0.91255 0.85401 0.85649 0.75184 0.84890 0.85705 0.84960 0.92977 0.92995 0.95396 0.95373 0.92700 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.45 36.01 0.38 -0.12 16 2 C 0.08 0.82 7.22 -82.41 -0.59 0.22 16 3 C -0.27 -2.62 10.65 -40.01 -0.43 -3.05 16 4 C 0.10 0.93 6.93 -82.26 -0.57 0.36 16 5 C -0.10 -0.59 10.12 36.01 0.36 -0.23 16 6 N -0.36 -3.73 3.10 -58.31 -0.18 -3.91 16 7 C 0.12 0.81 6.73 -5.19 -0.03 0.78 16 8 C 0.49 5.09 7.74 -10.99 -0.09 5.01 16 9 O -0.50 -7.41 13.88 5.56 0.08 -7.33 16 10 N -0.67 -6.12 5.33 -9.88 -0.05 -6.17 16 11 C 0.17 2.25 6.29 -83.72 -0.53 1.73 16 12 C -0.17 -2.39 8.70 -39.37 -0.34 -2.74 16 13 C -0.06 -0.90 10.03 -39.63 -0.40 -1.29 16 14 C -0.22 -3.47 9.04 -39.40 -0.36 -3.82 16 15 C 0.16 2.76 6.68 -39.24 -0.26 2.50 16 16 O -0.31 -6.28 10.13 -19.42 -0.20 -6.48 16 17 C 0.06 1.37 4.68 37.16 0.17 1.54 16 18 C 0.03 0.66 5.34 -27.89 -0.15 0.51 16 19 C -0.53 -14.58 9.11 -34.44 -0.31 -14.89 16 20 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 23 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 27 C -0.19 -2.65 9.90 -39.25 -0.39 -3.04 16 28 N -0.29 -3.56 12.58 33.67 0.42 -3.14 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.31 7.08 -51.93 -0.37 -0.06 16 36 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.13 0.41 7.04 -51.93 -0.37 0.04 16 38 H 0.41 2.15 8.82 -40.82 -0.36 1.79 16 39 H 0.13 1.98 6.23 -52.49 -0.33 1.66 16 40 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 41 H 0.13 2.03 6.29 -52.48 -0.33 1.70 16 42 H 0.05 1.04 7.66 -51.93 -0.40 0.65 16 43 H 0.05 1.05 7.66 -51.93 -0.40 0.65 16 44 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 400.37 15.07 6.03 6.03 Total: -1.00 -36.35 400.37 -8.55 -44.90 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.74 Total: 0.37 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -3.63 Total: -14.93 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.93 Total: -38.66 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.12 Total: -13.81 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.35 -8.55 -44.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055569677.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.329 kcal (2) G-P(sol) polarization free energy of solvation -36.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds