Wall clock time and date at job start Tue Mar 31 2020 05:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47778 * 2 1 4 4 C 1.53008 * 109.46985 * 239.99502 * 2 1 3 5 5 O 1.45206 * 109.47034 * 120.00061 * 2 1 3 6 6 C 1.34641 * 116.99722 * 59.99722 * 5 2 1 7 7 O 1.21506 * 120.00112 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99558 * 180.02562 * 6 5 2 9 9 C 1.46498 * 119.99968 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47202 * 180.02562 * 9 8 6 11 11 N 1.46507 * 109.47113 * 180.02562 * 10 9 8 12 12 C 1.34777 * 119.99879 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99931 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99753 * 179.97438 * 12 11 10 15 15 H 1.09004 * 109.50030 * 299.93979 * 14 12 11 16 16 C 1.53109 * 109.51677 * 179.87076 * 14 12 11 17 17 C 1.53036 * 109.50353 * 178.68476 * 16 14 12 18 18 C 1.53192 * 109.33897 * 61.35152 * 17 16 14 19 19 N 1.46927 * 108.77460 * 305.34738 * 18 17 16 20 20 C 1.36938 * 120.62765 * 233.58939 * 19 18 17 21 21 H 1.07999 * 120.00086 * 151.82701 * 20 19 18 22 22 C 1.38810 * 120.00163 * 331.82831 * 20 19 18 23 23 N 1.31626 * 120.00005 * 343.08472 * 22 20 19 24 24 Si 1.86797 * 120.00232 * 163.09083 * 22 20 19 25 25 H 1.48497 * 109.47599 * 59.99577 * 24 22 20 26 26 H 1.48499 * 109.47262 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.46959 * 299.99416 * 24 22 20 28 28 C 1.46921 * 118.74229 * 53.60713 * 19 18 17 29 29 H 1.09000 * 109.46944 * 300.00887 * 1 2 3 30 30 H 1.09002 * 109.46824 * 59.99910 * 1 2 3 31 31 H 1.08991 * 109.47600 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47415 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47016 * 299.99972 * 3 2 1 34 34 H 1.08994 * 109.47194 * 59.99554 * 3 2 1 35 35 H 1.08991 * 109.47162 * 300.00526 * 4 2 1 36 36 H 1.09002 * 109.46859 * 60.00610 * 4 2 1 37 37 H 1.08997 * 109.47110 * 180.02562 * 4 2 1 38 38 H 0.96998 * 120.00261 * 359.97438 * 8 6 5 39 39 H 1.08998 * 109.46929 * 60.00285 * 9 8 6 40 40 H 1.09004 * 109.47064 * 300.00244 * 9 8 6 41 41 H 1.08998 * 109.46977 * 60.00277 * 10 9 8 42 42 H 1.08994 * 109.47397 * 300.00183 * 10 9 8 43 43 H 0.96998 * 119.99860 * 0.02562 * 11 10 9 44 44 H 1.09000 * 109.49967 * 58.66067 * 16 14 12 45 45 H 1.08996 * 109.45122 * 298.68136 * 16 14 12 46 46 H 1.08994 * 109.50256 * 301.38054 * 17 16 14 47 47 H 1.08999 * 109.49423 * 181.31874 * 17 16 14 48 48 H 1.09003 * 109.58635 * 65.13314 * 18 17 16 49 49 H 1.09003 * 109.58898 * 185.55782 * 18 17 16 50 50 H 0.96997 * 119.99978 * 179.97438 * 23 22 20 51 51 H 1.09005 * 109.58484 * 66.17894 * 28 19 18 52 52 H 1.08993 * 109.58786 * 186.60473 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9724 1.3383 7 8 0.9507 -2.5094 0.5041 8 7 2.0671 -2.6655 2.4172 9 6 1.6729 -4.0665 2.5837 10 6 2.2721 -4.6142 3.8806 11 7 1.8784 -6.0156 4.0469 12 6 2.2934 -6.7087 5.1257 13 8 2.9924 -6.1722 5.9590 14 6 1.8880 -8.1499 5.2969 15 1 0.8011 -8.2192 5.3430 16 6 2.4903 -8.7003 6.5925 17 6 2.0516 -10.1540 6.7828 18 6 2.5682 -10.9971 5.6127 19 7 2.1126 -10.3897 4.3549 20 6 1.4309 -11.1325 3.4282 21 1 0.7261 -10.6535 2.7647 22 6 1.6457 -12.5011 3.3416 23 7 2.7145 -13.0358 3.8933 24 14 0.4181 -13.5842 2.4420 25 1 0.3162 -13.1468 1.0265 26 1 0.8745 -14.9964 2.4915 27 1 -0.9121 -13.4704 3.0923 28 6 2.4026 -8.9704 4.1099 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 0.0005 32 1 3.1301 1.4423 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.6766 -1.7489 -1.2492 36 1 1.6767 -0.2075 -2.1393 37 1 3.1299 -0.7218 -1.2490 38 1 2.6267 -2.2366 3.0834 39 1 2.0394 -4.6499 1.7391 40 1 0.5860 -4.1354 2.6286 41 1 1.9052 -4.0308 4.7251 42 1 3.3589 -4.5453 3.8363 43 1 1.3197 -6.4447 3.3802 44 1 2.1450 -8.1033 7.4366 45 1 3.5778 -8.6536 6.5357 46 1 0.9633 -10.2044 6.8150 47 1 2.4613 -10.5383 7.7169 48 1 3.6577 -11.0217 5.6331 49 1 2.1762 -12.0111 5.6919 50 1 2.8643 -13.9922 3.8332 51 1 3.4787 -8.8297 4.0077 52 1 1.9015 -8.6471 3.1976 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057921165.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:48 Heat of formation + Delta-G solvation = -110.422350 kcal Electronic energy + Delta-G solvation = -29937.494993 eV Core-core repulsion = 25744.318551 eV Total energy + Delta-G solvation = -4193.176442 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.07742 -39.83858 -37.97624 -37.02013 -35.86691 -34.60156 -33.83008 -33.09945 -30.74301 -30.27419 -28.78454 -27.79139 -27.73107 -25.26733 -24.25622 -22.78390 -22.23951 -21.96631 -20.48708 -20.23013 -19.08644 -18.54705 -17.18846 -16.91610 -16.69615 -16.32305 -15.89287 -15.69312 -15.14842 -14.87476 -14.81739 -14.73972 -14.41255 -13.88193 -13.78550 -13.60878 -13.36381 -13.00202 -12.88747 -12.60619 -12.50212 -12.42028 -12.30871 -12.27268 -12.15449 -12.08877 -11.72571 -11.68725 -11.66540 -11.11903 -10.84801 -10.71762 -10.65873 -10.39285 -10.33473 -10.19711 -10.00152 -9.89669 -9.57832 -9.51462 -9.35227 -9.10506 -8.49779 -6.73463 -5.82867 -3.27105 1.74084 2.52973 2.86656 3.22392 3.36213 3.42484 3.43130 3.90291 4.33210 4.33976 4.38053 4.45130 4.52344 4.74821 5.01495 5.08434 5.09120 5.16650 5.22837 5.31259 5.31471 5.36200 5.39765 5.48953 5.53871 5.55246 5.59895 5.61041 5.66403 5.80124 5.92451 5.93320 6.03911 6.05559 6.18742 6.23647 6.33529 6.40212 6.54801 6.65119 6.71122 6.84030 6.87257 7.03730 7.37934 7.53550 7.64984 7.75207 8.04873 8.37469 8.39955 9.15780 9.78342 10.35176 11.25332 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014799 B = 0.001931 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.589408 B =14494.719697 C =15985.148448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.365 6.365 6 C 0.652 3.348 7 O -0.564 6.564 8 N -0.708 5.708 9 C 0.126 3.874 10 C 0.110 3.890 11 N -0.732 5.732 12 C 0.528 3.472 13 O -0.546 6.546 14 C -0.124 4.124 15 H 0.095 0.905 16 C -0.086 4.086 17 C -0.144 4.144 18 C 0.168 3.832 19 N -0.588 5.588 20 C -0.258 4.258 21 H 0.066 0.934 22 C 0.005 3.995 23 N -0.900 5.900 24 Si 0.904 3.096 25 H -0.282 1.282 26 H -0.290 1.290 27 H -0.283 1.283 28 C 0.160 3.840 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.409 0.591 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.406 0.594 44 H 0.051 0.949 45 H 0.060 0.940 46 H 0.054 0.946 47 H 0.053 0.947 48 H 0.019 0.981 49 H 0.088 0.912 50 H 0.255 0.745 51 H 0.022 0.978 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.328 25.836 -4.345 26.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.242 4.242 5 O -0.280 6.280 6 C 0.405 3.595 7 O -0.453 6.453 8 N -0.368 5.368 9 C 0.003 3.997 10 C -0.015 4.015 11 N -0.386 5.386 12 C 0.315 3.685 13 O -0.422 6.422 14 C -0.147 4.147 15 H 0.113 0.887 16 C -0.125 4.125 17 C -0.183 4.183 18 C 0.042 3.958 19 N -0.310 5.310 20 C -0.387 4.387 21 H 0.084 0.916 22 C -0.195 4.195 23 N -0.544 5.544 24 Si 0.734 3.266 25 H -0.208 1.208 26 H -0.216 1.216 27 H -0.210 1.210 28 C 0.032 3.968 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.244 0.756 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.241 0.759 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.038 0.962 49 H 0.106 0.894 50 H 0.065 0.935 51 H 0.040 0.960 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.118 25.819 -4.231 26.249 hybrid contribution -0.614 -0.531 -0.560 0.987 sum -2.733 25.288 -4.791 25.882 Atomic orbital electron populations 1.22522 0.93900 1.05160 1.02539 1.22098 0.94427 0.91503 0.82007 1.21865 1.02312 0.92464 1.03169 1.22526 1.01633 1.03580 0.96422 1.86300 1.71569 1.23479 1.46619 1.17988 0.78884 0.80579 0.82075 1.90928 1.40845 1.70413 1.43102 1.44438 1.55943 1.12416 1.24019 1.21446 1.00810 0.79396 0.98092 1.21299 1.00523 0.83424 0.96277 1.45861 1.55158 1.11496 1.26134 1.21080 0.78647 0.88879 0.79881 1.90647 1.37646 1.71330 1.42585 1.22010 1.02430 0.89426 1.00881 0.88719 1.21203 1.00451 0.96208 0.94603 1.22219 1.00765 0.95295 0.99996 1.20840 0.96001 0.96744 0.82167 1.44017 1.65512 1.04501 1.16975 1.19113 1.15948 0.89966 1.13722 0.91598 1.25064 0.96628 0.98171 0.99597 1.70033 1.24857 1.11420 1.48041 0.86355 0.81055 0.79648 0.79591 1.20842 1.21631 1.20961 1.20773 0.97047 0.86216 0.92749 0.92160 0.91062 0.89315 0.91415 0.90067 0.91453 0.89297 0.91059 0.92101 0.75641 0.90057 0.90244 0.90873 0.90750 0.75903 0.92983 0.92107 0.92674 0.92874 0.96250 0.89417 0.93480 0.95983 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 8.37 37.16 0.31 -1.13 16 2 C 0.14 1.09 1.13 -90.62 -0.10 0.99 16 3 C -0.14 -0.77 8.85 37.16 0.33 -0.44 16 4 C -0.18 -1.48 8.37 37.16 0.31 -1.17 16 5 O -0.36 -3.50 9.94 -40.33 -0.40 -3.90 16 6 C 0.65 6.92 8.06 54.06 0.44 7.35 16 7 O -0.56 -7.28 11.88 -19.28 -0.23 -7.51 16 8 N -0.71 -5.93 5.56 -65.28 -0.36 -6.29 16 9 C 0.13 1.06 5.79 -4.04 -0.02 1.04 16 10 C 0.11 1.04 5.79 -4.04 -0.02 1.01 16 11 N -0.73 -8.56 5.46 -60.29 -0.33 -8.89 16 12 C 0.53 8.22 7.16 -10.99 -0.08 8.14 16 13 O -0.55 -10.06 15.98 5.56 0.09 -9.97 16 14 C -0.12 -2.10 2.68 -91.61 -0.25 -2.35 16 15 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 16 C -0.09 -1.55 4.47 -26.66 -0.12 -1.67 16 17 C -0.14 -2.74 6.08 -26.61 -0.16 -2.90 16 18 C 0.17 3.94 5.30 -3.71 -0.02 3.92 16 19 N -0.59 -14.15 2.99 -172.32 -0.52 -14.67 16 20 C -0.26 -6.79 9.58 -15.06 -0.14 -6.93 16 21 H 0.07 1.67 7.88 -52.49 -0.41 1.26 16 22 C 0.00 0.12 4.92 -17.43 -0.09 0.04 16 23 N -0.90 -25.61 11.20 55.49 0.62 -24.99 16 24 Si 0.90 21.15 29.59 -169.99 -5.03 16.12 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 C 0.16 3.15 5.65 -3.71 -0.02 3.13 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.91 5.88 -51.93 -0.31 0.60 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.93 5.88 -51.93 -0.31 0.63 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.41 2.59 8.58 -40.82 -0.35 2.24 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.41 4.09 8.01 -40.82 -0.33 3.77 16 44 H 0.05 0.88 8.07 -51.93 -0.42 0.46 16 45 H 0.06 1.15 8.13 -51.93 -0.42 0.73 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.09 2.29 6.06 -51.93 -0.31 1.98 16 50 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 51 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 52 H 0.06 1.02 7.53 -51.93 -0.39 0.63 16 LS Contribution 410.72 15.07 6.19 6.19 Total: -1.00 -32.55 410.72 -8.75 -41.31 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -9.15 Total: 3.59 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 0.36 Total: 9.02 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.59 Total: -54.84 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.54 Total: -21.38 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.55 -8.75 -41.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057921165.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.116 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds