Wall clock time and date at job start Tue Mar 31 2020 05:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47058 * 2 1 4 4 C 1.52999 * 109.46865 * 240.00519 * 2 1 3 5 5 O 1.45201 * 109.47380 * 120.00160 * 2 1 3 6 6 C 1.34637 * 116.99801 * 59.99673 * 5 2 1 7 7 O 1.21510 * 119.99849 * 0.02562 * 6 5 2 8 8 N 1.34772 * 119.99811 * 179.97438 * 6 5 2 9 9 C 1.46505 * 119.99875 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47146 * 180.02562 * 9 8 6 11 11 N 1.46497 * 109.46921 * 180.02562 * 10 9 8 12 12 C 1.34779 * 119.99710 * 180.27578 * 11 10 9 13 13 O 1.21283 * 119.99773 * 359.72859 * 12 11 10 14 14 C 1.50697 * 120.00220 * 179.72918 * 12 11 10 15 15 H 1.08996 * 109.49612 * 59.99421 * 14 12 11 16 16 C 1.53034 * 109.49915 * 180.02562 * 14 12 11 17 17 C 1.53042 * 109.53700 * 181.31616 * 16 14 12 18 18 C 1.53191 * 109.31315 * 298.63142 * 17 16 14 19 19 N 1.46926 * 108.77405 * 54.63249 * 18 17 16 20 20 C 1.36940 * 120.62705 * 126.39287 * 19 18 17 21 21 H 1.07997 * 120.00099 * 207.68629 * 20 19 18 22 22 C 1.38811 * 120.00228 * 27.68251 * 20 19 18 23 23 N 1.31621 * 119.99960 * 17.35927 * 22 20 19 24 24 Si 1.86793 * 120.00225 * 197.35873 * 22 20 19 25 25 H 1.48499 * 109.47145 * 60.00202 * 24 22 20 26 26 H 1.48504 * 109.47390 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47260 * 300.00145 * 24 22 20 28 28 C 1.46931 * 118.76657 * 306.41425 * 19 18 17 29 29 H 1.09008 * 109.47060 * 300.00169 * 1 2 3 30 30 H 1.08997 * 109.47440 * 59.99710 * 1 2 3 31 31 H 1.08999 * 109.47344 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47321 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.47472 * 300.00334 * 3 2 1 34 34 H 1.09001 * 109.47457 * 60.00375 * 3 2 1 35 35 H 1.09006 * 109.47039 * 299.99313 * 4 2 1 36 36 H 1.08997 * 109.47279 * 59.99672 * 4 2 1 37 37 H 1.09001 * 109.47322 * 180.02562 * 4 2 1 38 38 H 0.96994 * 120.00085 * 0.02562 * 8 6 5 39 39 H 1.08996 * 109.46546 * 60.00471 * 9 8 6 40 40 H 1.08999 * 109.46885 * 300.00365 * 9 8 6 41 41 H 1.09002 * 109.46942 * 59.99981 * 10 9 8 42 42 H 1.08996 * 109.47135 * 300.00778 * 10 9 8 43 43 H 0.96994 * 120.00264 * 0.02562 * 11 10 9 44 44 H 1.09008 * 109.45823 * 301.33288 * 16 14 12 45 45 H 1.08995 * 109.46469 * 61.29396 * 16 14 12 46 46 H 1.08995 * 109.50180 * 58.58426 * 17 16 14 47 47 H 1.09004 * 109.50003 * 178.68218 * 17 16 14 48 48 H 1.09000 * 109.59126 * 174.42501 * 18 17 16 49 49 H 1.08999 * 109.58571 * 294.70854 * 18 17 16 50 50 H 0.97001 * 120.00101 * 180.02562 * 23 22 20 51 51 H 1.08994 * 109.56025 * 293.78438 * 28 19 18 52 52 H 1.09001 * 109.61239 * 173.35921 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5096 0.5035 8 7 2.0681 -2.6657 2.4165 9 6 1.6740 -4.0669 2.5830 10 6 2.2742 -4.6150 3.8793 11 7 1.8806 -6.0163 4.0454 12 6 2.2915 -6.7080 5.1267 13 8 2.9912 -6.1717 5.9596 14 6 1.8816 -8.1476 5.3008 15 1 2.2476 -8.7345 4.4584 16 6 2.4766 -8.6946 6.6003 17 6 2.0880 -10.1661 6.7616 18 6 0.5626 -10.2814 6.8422 19 7 -0.0239 -9.6279 5.6641 20 6 -0.9058 -10.2999 4.8604 21 1 -0.9915 -10.0386 3.8160 22 6 -1.6897 -11.3168 5.3880 23 7 -1.8490 -11.4164 6.6907 24 14 -2.5183 -12.5439 4.2492 25 1 -1.4859 -13.2604 3.4582 26 1 -3.2917 -13.5228 5.0548 27 1 -3.4356 -11.8244 3.3295 28 6 0.3537 -8.2401 5.3641 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6765 -0.2073 -2.1392 37 1 3.1299 -0.7216 -1.2492 38 1 2.6277 -2.2369 3.0826 39 1 2.0397 -4.6500 1.7379 40 1 0.5871 -4.1356 2.6288 41 1 1.9082 -4.0317 4.7242 42 1 3.3611 -4.5461 3.8340 43 1 1.3212 -6.4452 3.3791 44 1 3.5627 -8.6073 6.5674 45 1 2.0919 -8.1228 7.4448 46 1 2.4510 -10.7342 5.9052 47 1 2.5315 -10.5615 7.6754 48 1 0.2758 -11.3329 6.8575 49 1 0.2066 -9.7924 7.7489 50 1 -2.3964 -12.1273 7.0595 51 1 -0.0200 -7.5824 6.1488 52 1 -0.0703 -7.9449 4.4043 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057921171.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:53 Heat of formation + Delta-G solvation = -110.261990 kcal Electronic energy + Delta-G solvation = -29938.526563 eV Core-core repulsion = 25745.357074 eV Total energy + Delta-G solvation = -4193.169488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.07765 -39.84086 -37.97667 -37.02208 -35.86661 -34.60207 -33.83064 -33.10242 -30.74409 -30.27521 -28.78599 -27.79031 -27.73038 -25.26821 -24.25709 -22.78437 -22.24014 -21.96779 -20.48766 -20.23101 -19.08546 -18.54700 -17.19050 -16.91638 -16.69645 -16.32371 -15.89359 -15.69373 -15.14861 -14.87553 -14.81775 -14.73971 -14.41313 -13.88335 -13.78558 -13.60875 -13.36413 -13.00347 -12.88661 -12.60639 -12.50149 -12.42288 -12.30842 -12.27230 -12.15469 -12.08897 -11.72599 -11.68710 -11.66602 -11.12132 -10.84680 -10.71759 -10.65838 -10.39258 -10.33495 -10.19576 -10.00153 -9.89804 -9.57872 -9.51407 -9.35212 -9.10581 -8.49581 -6.74241 -5.82885 -3.26486 1.74067 2.52964 2.86496 3.22401 3.36292 3.42584 3.43251 3.90262 4.33180 4.33921 4.38077 4.45215 4.52366 4.74799 5.01382 5.08414 5.09065 5.16650 5.22803 5.31178 5.31479 5.36142 5.39750 5.48962 5.53777 5.55180 5.59837 5.61005 5.66329 5.80066 5.92469 5.93275 6.03861 6.05541 6.18751 6.23541 6.33428 6.40129 6.54739 6.65011 6.71066 6.83982 6.87103 7.03723 7.37830 7.53459 7.65161 7.75265 8.04870 8.37355 8.39664 9.15692 9.78440 10.34956 11.25324 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014816 B = 0.001931 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.367744 B =14497.025823 C =15983.730886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.365 6.365 6 C 0.652 3.348 7 O -0.564 6.564 8 N -0.708 5.708 9 C 0.126 3.874 10 C 0.110 3.890 11 N -0.732 5.732 12 C 0.528 3.472 13 O -0.546 6.546 14 C -0.124 4.124 15 H 0.095 0.905 16 C -0.087 4.087 17 C -0.143 4.143 18 C 0.168 3.832 19 N -0.588 5.588 20 C -0.258 4.258 21 H 0.067 0.933 22 C 0.004 3.996 23 N -0.900 5.900 24 Si 0.904 3.096 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.160 3.840 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.409 0.591 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.406 0.594 44 H 0.051 0.949 45 H 0.060 0.940 46 H 0.055 0.945 47 H 0.053 0.947 48 H 0.088 0.912 49 H 0.019 0.981 50 H 0.255 0.745 51 H 0.022 0.978 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.454 21.659 -11.565 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.405 3.595 7 O -0.453 6.453 8 N -0.368 5.368 9 C 0.003 3.997 10 C -0.015 4.015 11 N -0.386 5.386 12 C 0.315 3.685 13 O -0.422 6.422 14 C -0.147 4.147 15 H 0.113 0.887 16 C -0.125 4.125 17 C -0.183 4.183 18 C 0.042 3.958 19 N -0.310 5.310 20 C -0.387 4.387 21 H 0.084 0.916 22 C -0.195 4.195 23 N -0.543 5.543 24 Si 0.733 3.267 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.208 1.208 28 C 0.032 3.968 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.244 0.756 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.241 0.759 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.106 0.894 49 H 0.037 0.963 50 H 0.065 0.935 51 H 0.040 0.960 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.470 21.710 -11.331 26.257 hybrid contribution -0.499 -0.573 -0.628 0.986 sum 8.972 21.138 -11.960 25.890 Atomic orbital electron populations 1.22526 0.93849 1.05204 1.02583 1.22095 0.94472 0.91492 0.81974 1.21868 1.02263 0.92476 1.03204 1.22523 1.01557 1.03580 0.96463 1.86298 1.71548 1.23484 1.46634 1.17987 0.78862 0.80580 0.82099 1.90929 1.40841 1.70420 1.43104 1.44438 1.55902 1.12409 1.24064 1.21448 1.01029 0.79346 0.97919 1.21299 1.00269 0.83517 0.96439 1.45858 1.55135 1.11584 1.26067 1.21083 0.78464 0.89135 0.79812 1.90648 1.37819 1.71280 1.42457 1.21994 1.01493 0.90210 1.01039 0.88720 1.21193 0.98974 0.96694 0.95616 1.22220 1.00858 0.94841 1.00345 1.20839 0.86827 0.99902 0.88225 1.44022 1.49636 1.07388 1.29960 1.19118 1.14419 1.14420 0.90773 0.91571 1.25048 0.97526 1.01254 0.95662 1.70036 1.40909 1.33231 1.10173 0.86355 0.79090 0.81230 0.79990 1.20976 1.21634 1.20843 1.20772 0.88526 0.88678 0.98802 0.92098 0.91064 0.89294 0.91450 0.90071 0.91414 0.89318 0.91060 0.92157 0.75641 0.90234 0.90064 0.90744 0.90880 0.75905 0.92992 0.92103 0.92669 0.92867 0.89377 0.96261 0.93483 0.95979 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.48 8.37 37.16 0.31 -1.17 16 2 C 0.14 1.09 1.13 -90.62 -0.10 0.99 16 3 C -0.14 -0.77 8.85 37.16 0.33 -0.44 16 4 C -0.18 -1.45 8.37 37.16 0.31 -1.13 16 5 O -0.36 -3.50 9.94 -40.32 -0.40 -3.90 16 6 C 0.65 6.92 8.06 54.05 0.44 7.35 16 7 O -0.56 -7.28 11.88 -19.28 -0.23 -7.51 16 8 N -0.71 -5.93 5.56 -65.28 -0.36 -6.29 16 9 C 0.13 1.06 5.79 -4.04 -0.02 1.04 16 10 C 0.11 1.04 5.79 -4.04 -0.02 1.01 16 11 N -0.73 -8.55 5.46 -60.29 -0.33 -8.88 16 12 C 0.53 8.21 7.16 -10.99 -0.08 8.13 16 13 O -0.55 -10.06 15.98 5.56 0.09 -9.97 16 14 C -0.12 -2.10 2.67 -91.66 -0.25 -2.35 16 15 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 16 C -0.09 -1.55 4.46 -26.69 -0.12 -1.67 16 17 C -0.14 -2.73 6.08 -26.61 -0.16 -2.90 16 18 C 0.17 3.93 5.31 -3.71 -0.02 3.91 16 19 N -0.59 -14.15 3.00 -172.32 -0.52 -14.67 16 20 C -0.26 -6.79 9.58 -15.06 -0.14 -6.93 16 21 H 0.07 1.68 7.89 -52.49 -0.41 1.26 16 22 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 23 N -0.90 -25.61 11.19 55.49 0.62 -24.99 16 24 Si 0.90 21.15 29.59 -169.99 -5.03 16.12 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 C 0.16 3.15 5.66 -3.71 -0.02 3.13 16 29 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.93 5.88 -51.93 -0.31 0.63 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.91 5.88 -51.93 -0.31 0.60 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.41 2.59 8.58 -40.82 -0.35 2.24 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.41 4.09 8.02 -40.82 -0.33 3.76 16 44 H 0.05 0.88 8.07 -51.92 -0.42 0.46 16 45 H 0.06 1.15 8.13 -51.93 -0.42 0.73 16 46 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.09 2.30 6.04 -51.93 -0.31 1.99 16 49 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 51 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 52 H 0.06 1.02 7.54 -51.93 -0.39 0.63 16 LS Contribution 410.70 15.07 6.19 6.19 Total: -1.00 -32.56 410.70 -8.75 -41.31 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -9.15 Total: 3.58 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 0.36 Total: 9.00 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.59 Total: -54.83 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.54 Total: -21.38 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.56 -8.75 -41.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057921171.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.952 kcal (2) G-P(sol) polarization free energy of solvation -32.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds