Wall clock time and date at job start Tue Mar 31 2020 06:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47318 * 2 1 4 4 N 1.46506 * 109.47331 * 120.00072 * 2 1 3 5 5 C 1.30652 * 120.00519 * 115.92861 * 4 2 1 6 6 C 1.47115 * 119.99709 * 7.34862 * 5 4 2 7 7 C 1.36317 * 125.45075 * 230.40995 * 6 5 4 8 8 C 1.37736 * 113.31502 * 179.97438 * 7 6 5 9 9 C 1.33621 * 115.06368 * 0.25031 * 8 7 6 10 10 S 1.70618 * 110.94827 * 359.61992 * 9 8 7 11 11 N 1.38014 * 120.00182 * 187.34617 * 5 4 2 12 12 C 1.46496 * 119.99739 * 5.78259 * 11 5 4 13 13 C 1.50702 * 109.47386 * 89.99930 * 12 11 5 14 14 H 1.08004 * 119.99483 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00250 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99631 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00160 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47012 * 90.00423 * 17 15 13 19 19 H 1.48501 * 109.46946 * 210.00363 * 17 15 13 20 20 H 1.48495 * 109.47094 * 330.00194 * 17 15 13 21 21 C 1.46498 * 119.99959 * 185.77531 * 11 5 4 22 22 C 1.50698 * 109.46894 * 95.52147 * 21 11 5 23 23 C 1.38676 * 120.42276 * 274.39569 * 22 21 11 24 24 C 1.38627 * 118.41945 * 179.78300 * 23 22 21 25 25 C 1.38228 * 119.16368 * 0.51254 * 24 23 22 26 26 N 1.31850 * 120.76238 * 359.72108 * 25 24 23 27 27 C 1.31890 * 121.72626 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47221 * 300.00049 * 1 2 3 29 29 H 1.08999 * 109.47062 * 60.00291 * 1 2 3 30 30 H 1.09006 * 109.46831 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47421 * 239.99558 * 2 1 3 32 32 H 1.09005 * 109.47350 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47071 * 300.00318 * 3 2 1 34 34 H 1.09002 * 109.47015 * 59.99824 * 3 2 1 35 35 H 1.08011 * 123.33856 * 359.96993 * 7 6 5 36 36 H 1.07997 * 122.47102 * 179.97438 * 8 7 6 37 37 H 1.07997 * 124.52497 * 179.71524 * 9 8 7 38 38 H 1.09007 * 109.46574 * 209.99366 * 12 11 5 39 39 H 1.08998 * 109.47319 * 329.99731 * 12 11 5 40 40 H 0.97009 * 119.99519 * 179.97438 * 16 15 13 41 41 H 1.08994 * 109.47557 * 215.52378 * 21 11 5 42 42 H 1.08999 * 109.47279 * 335.53016 * 21 11 5 43 43 H 1.07998 * 120.78852 * 0.02562 * 23 22 21 44 44 H 1.08003 * 120.41535 * 180.21926 * 24 23 22 45 45 H 1.07996 * 119.61959 * 179.74883 * 25 24 23 46 46 H 1.08000 * 119.61419 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.7026 -1.7974 1.0780 6 6 3.1217 -2.2645 -0.2525 7 6 2.9298 -3.5206 -0.7461 8 6 3.4216 -3.6860 -2.0220 9 6 4.0002 -2.6036 -2.5503 10 16 3.9496 -1.2917 -1.4607 11 7 3.0323 -2.5282 2.2015 12 6 2.5091 -2.1333 3.5116 13 6 1.1929 -2.8252 3.7564 14 1 0.7865 -3.4921 3.0103 15 6 0.5075 -2.6070 4.9326 16 7 1.0022 -1.7946 5.8408 17 14 -1.1243 -3.4641 5.2356 18 1 -0.8824 -4.7657 5.9083 19 1 -1.9784 -2.6110 6.1006 20 1 -1.8095 -3.6968 3.9389 21 6 3.9052 -3.6988 2.0837 22 6 5.3268 -3.2973 2.3817 23 6 6.1346 -2.7789 1.3807 24 6 7.4342 -2.4189 1.7019 25 6 7.8819 -2.5973 2.9975 26 7 7.0871 -3.0978 3.9228 27 6 5.8438 -3.4465 3.6544 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 2.4407 -4.3080 -0.1917 36 1 3.3492 -4.6228 -2.5544 37 1 4.4397 -2.5641 -3.5360 38 1 3.2195 -2.4190 4.2875 39 1 2.3616 -1.0536 3.5336 40 1 0.5198 -1.6407 6.6683 41 1 3.5869 -4.4623 2.7934 42 1 3.8448 -4.0966 1.0707 43 1 5.7589 -2.6550 0.3758 44 1 8.0901 -2.0087 0.9483 45 1 8.8943 -2.3232 3.2548 46 1 5.2226 -3.8535 4.4385 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057991473.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:30 Heat of formation + Delta-G solvation = 102.369143 kcal Electronic energy + Delta-G solvation = -28206.119595 eV Core-core repulsion = 24609.087702 eV Total energy + Delta-G solvation = -3597.031893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.02596 -38.62956 -36.79243 -35.56296 -32.91285 -32.43544 -31.71206 -30.44569 -29.11615 -27.26938 -26.71707 -25.53923 -24.45300 -23.37447 -22.67560 -22.06058 -20.35023 -19.92775 -18.66615 -17.06316 -16.77824 -16.36197 -16.18609 -15.78259 -15.49562 -15.01079 -14.74159 -14.20269 -13.91911 -13.69971 -13.44936 -13.34542 -13.08107 -13.03039 -12.78945 -12.65342 -12.41415 -12.29436 -11.83355 -11.76654 -11.56084 -11.34516 -11.16973 -11.08546 -10.88419 -10.84955 -10.65989 -10.52269 -10.27940 -10.04512 -9.59758 -9.36097 -9.22655 -8.82313 -8.71940 -8.44669 -8.33785 -8.12051 -6.91365 -5.95014 -4.00231 0.78172 1.29220 1.46156 1.50135 1.98135 2.57081 3.32728 3.36411 3.40286 3.44295 3.80672 4.21794 4.49313 4.66690 4.79812 4.96005 4.98918 5.10332 5.16574 5.23882 5.30079 5.37199 5.37751 5.50197 5.52558 5.62002 5.67603 5.80003 5.90570 5.98461 5.99222 6.01118 6.10044 6.22046 6.24051 6.27478 6.28605 6.37211 6.46637 6.56489 6.65989 6.74633 6.91592 7.11877 7.59289 7.88678 8.00941 8.19154 8.34157 8.41599 8.95630 9.09047 9.63595 11.10915 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.007660 B = 0.005609 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3654.635764 B = 4990.427478 C = 7164.677520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.075 3.925 3 C -0.135 4.135 4 N -0.573 5.573 5 C 0.464 3.536 6 C -0.202 4.202 7 C -0.113 4.113 8 C -0.135 4.135 9 C -0.265 4.265 10 S 0.200 5.800 11 N -0.571 5.571 12 C 0.262 3.738 13 C -0.518 4.518 14 H 0.055 0.945 15 C 0.063 3.937 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.156 3.844 22 C -0.143 4.143 23 C -0.064 4.064 24 C -0.179 4.179 25 C 0.090 3.910 26 N -0.487 5.487 27 C 0.118 3.882 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.149 0.851 36 H 0.138 0.862 37 H 0.161 0.839 38 H 0.025 0.975 39 H 0.052 0.948 40 H 0.261 0.739 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.125 0.875 44 H 0.129 0.871 45 H 0.150 0.850 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.665 -1.600 -16.254 18.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.038 4.038 3 C -0.193 4.193 4 N -0.301 5.301 5 C 0.185 3.815 6 C -0.324 4.324 7 C -0.146 4.146 8 C -0.167 4.167 9 C -0.403 4.403 10 S 0.466 5.534 11 N -0.287 5.287 12 C 0.143 3.857 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.139 4.139 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.201 1.201 21 C 0.031 3.969 22 C -0.147 4.147 23 C -0.091 4.091 24 C -0.199 4.199 25 C -0.067 4.067 26 N -0.195 5.195 27 C -0.039 4.039 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.166 0.834 36 H 0.156 0.844 37 H 0.179 0.821 38 H 0.043 0.957 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.143 0.857 44 H 0.147 0.853 45 H 0.167 0.833 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.095 0.447 -14.598 17.754 hybrid contribution -1.542 -2.135 -1.509 3.035 sum 8.553 -1.688 -16.107 18.315 Atomic orbital electron populations 1.21745 0.94784 1.01614 1.01075 1.21636 0.95525 0.94942 0.91649 1.21764 1.00202 0.95916 1.01396 1.72557 1.21836 1.08101 1.27653 1.19359 0.91203 0.88654 0.82249 1.24589 1.08824 0.98171 1.00788 1.20808 1.01909 0.96289 0.95617 1.19972 1.01379 0.99696 0.95612 1.25171 1.10120 0.98951 1.06020 1.83293 1.52685 1.12574 1.04809 1.46709 1.48548 1.26760 1.06674 1.19248 0.92934 0.97708 0.75796 1.21431 1.05398 1.26808 1.02056 0.92674 1.24879 0.97605 0.95348 0.96072 1.69940 1.38986 1.36188 1.08182 0.86600 0.84056 0.79296 0.78026 1.20811 1.21293 1.20096 1.20432 0.84351 0.89043 1.03100 1.21550 0.98042 1.00192 0.94905 1.21485 0.93331 0.94876 0.99412 1.22050 0.96844 1.02651 0.98341 1.22683 0.99280 0.95456 0.89308 1.67707 1.05229 1.10656 1.35892 1.22829 0.91222 0.94722 0.95111 0.91872 0.93329 0.93158 0.94063 0.93574 0.93000 0.91960 0.83351 0.84437 0.82102 0.95667 0.93050 0.92898 0.89014 0.89817 0.85703 0.85348 0.83300 0.82392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 9.52 37.16 0.35 -1.89 16 2 C 0.07 1.28 3.07 -67.93 -0.21 1.07 16 3 C -0.13 -2.05 9.52 37.15 0.35 -1.69 16 4 N -0.57 -11.95 8.92 -52.17 -0.47 -12.41 16 5 C 0.46 8.89 7.43 -154.18 -1.15 7.75 16 6 C -0.20 -3.04 3.60 -36.67 -0.13 -3.17 16 7 C -0.11 -1.50 8.10 -40.46 -0.33 -1.82 16 8 C -0.13 -1.46 10.15 -41.38 -0.42 -1.88 16 9 C -0.27 -2.72 10.92 29.11 0.32 -2.40 16 10 S 0.20 2.44 20.33 -107.50 -2.19 0.26 16 11 N -0.57 -11.47 2.53 -174.58 -0.44 -11.91 16 12 C 0.26 6.53 5.24 -5.19 -0.03 6.51 16 13 C -0.52 -13.98 9.39 -34.44 -0.32 -14.31 16 14 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 17 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.16 2.54 5.53 -5.20 -0.03 2.51 16 22 C -0.14 -2.24 5.47 -104.48 -0.57 -2.81 16 23 C -0.06 -0.90 9.88 -39.28 -0.39 -1.29 16 24 C -0.18 -2.24 10.11 -39.44 -0.40 -2.64 16 25 C 0.09 1.21 11.18 -17.55 -0.20 1.01 16 26 N -0.49 -7.92 10.36 -13.25 -0.14 -8.06 16 27 C 0.12 1.95 10.79 -17.55 -0.19 1.76 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.04 0.66 4.41 -42.81 -0.19 0.48 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.15 1.93 7.45 -52.48 -0.39 1.54 16 36 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.03 0.66 8.02 -51.93 -0.42 0.24 16 39 H 0.05 1.46 7.29 -51.93 -0.38 1.08 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.09 1.50 8.03 -51.93 -0.42 1.08 16 42 H 0.08 1.19 4.34 -51.93 -0.23 0.96 16 43 H 0.13 1.64 6.98 -52.49 -0.37 1.27 16 44 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 45 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 46 H 0.16 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 393.44 15.07 5.93 5.93 Total: -1.00 -31.36 393.44 -11.60 -42.95 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.58 Total: 3.76 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -3.43 Total: -11.64 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.31 Total: -57.80 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.19 Total: 0.26 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.36 -11.60 -42.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057991473.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.322 kcal (2) G-P(sol) polarization free energy of solvation -31.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds