Wall clock time and date at job start Tue Mar 31 2020 05:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34197 * 125.36957 * 2 1 4 4 C 1.47200 * 106.60912 * 179.97438 * 3 2 1 5 5 C 1.41732 * 127.00960 * 179.97438 * 4 3 2 6 6 C 1.38336 * 120.00010 * 359.97438 * 5 4 3 7 7 N 1.36317 * 127.22607 * 359.67497 * 6 5 4 8 8 C 1.30879 * 109.03706 * 179.88725 * 7 6 5 9 9 C 1.46653 * 124.29805 * 180.15285 * 8 7 6 10 10 C 1.36636 * 125.46057 * 180.25534 * 9 8 7 11 11 C 1.37698 * 113.25235 * 180.02562 * 10 9 8 12 12 C 1.33665 * 115.08641 * 359.97438 * 11 10 9 13 13 S 1.70606 * 110.99427 * 359.72683 * 12 11 10 14 14 O 1.34783 * 111.40587 * 0.40253 * 8 7 6 15 15 C 1.35048 * 108.66475 * 359.75491 * 14 8 7 16 16 O 1.21707 * 127.32750 * 180.02562 * 15 14 8 17 17 C 1.38475 * 105.97637 * 359.75452 * 4 3 2 18 18 C 1.50706 * 126.01459 * 180.24699 * 17 4 3 19 19 N 1.35718 * 107.96855 * 0.40235 * 17 4 3 20 20 C 1.37167 * 124.90470 * 179.83710 * 19 17 4 21 21 H 1.08003 * 119.99995 * 139.29153 * 20 19 17 22 22 C 1.38997 * 120.00345 * 319.29390 * 20 19 17 23 23 N 1.31298 * 119.99940 * 339.06671 * 22 20 19 24 24 Si 1.86808 * 120.00080 * 159.06563 * 22 20 19 25 25 H 1.48500 * 109.47119 * 270.00106 * 24 22 20 26 26 H 1.48498 * 109.47079 * 30.00339 * 24 22 20 27 27 H 1.48495 * 109.46804 * 150.00349 * 24 22 20 28 28 H 1.09000 * 109.46922 * 273.91456 * 1 2 3 29 29 H 1.08997 * 109.47700 * 33.91877 * 1 2 3 30 30 H 1.09001 * 109.47237 * 153.91889 * 1 2 3 31 31 H 1.07991 * 126.69567 * 0.02562 * 3 2 1 32 32 H 1.07993 * 119.99940 * 179.97438 * 5 4 3 33 33 H 1.08008 * 123.37746 * 0.03691 * 10 9 8 34 34 H 1.07997 * 122.45802 * 179.97438 * 11 10 9 35 35 H 1.08001 * 124.49799 * 179.97438 * 12 11 10 36 36 H 1.09007 * 109.46575 * 270.18555 * 18 17 4 37 37 H 1.08998 * 109.47120 * 30.18420 * 18 17 4 38 38 H 1.09002 * 109.46949 * 150.19376 * 18 17 4 39 39 H 0.97006 * 119.99868 * 176.06619 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2838 1.0943 0.0000 4 6 3.6776 0.6209 0.0006 5 6 4.8494 1.4181 0.0003 6 6 4.7474 2.7977 -0.0012 7 7 3.6041 3.5401 -0.0086 8 6 3.9198 4.8102 -0.0051 9 6 2.9434 5.9045 -0.0078 10 6 3.2460 7.2369 -0.0091 11 6 2.1327 8.0472 -0.0110 12 6 0.9621 7.4019 -0.0118 13 16 1.1958 5.7120 -0.0177 14 8 5.2563 4.9849 -0.0041 15 6 5.8507 3.7723 -0.0017 16 8 7.0445 3.5356 0.0002 17 6 3.6103 -0.7622 0.0067 18 6 4.7849 -1.7065 0.0148 19 7 2.3006 -1.1177 0.0005 20 6 1.8378 -2.4090 0.0005 21 1 0.9849 -2.6769 0.6066 22 6 2.4663 -3.3726 -0.7794 23 7 3.2065 -3.0097 -1.8013 24 14 2.2580 -5.1842 -0.3736 25 1 3.3259 -5.6065 0.5679 26 1 0.9300 -5.4012 0.2545 27 1 2.3526 -5.9848 -1.6207 28 1 -0.3633 0.0702 1.0253 29 1 -0.3634 0.8527 -0.5734 30 1 -0.3634 -0.9230 -0.4518 31 1 1.9513 2.1217 0.0004 32 1 5.8219 0.9486 0.0013 33 1 4.2572 7.6166 -0.0089 34 1 2.2003 9.1250 -0.0119 35 1 -0.0033 7.8861 -0.0129 36 1 5.0734 -1.9362 -1.0110 37 1 5.6229 -1.2395 0.5321 38 1 4.5076 -2.6268 0.5289 39 1 3.6910 -3.6780 -2.3109 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058023252.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:05 Heat of formation + Delta-G solvation = 49.832205 kcal Electronic energy + Delta-G solvation = -26150.996784 eV Core-core repulsion = 22345.446440 eV Total energy + Delta-G solvation = -3805.550343 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.082 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.93582 -40.38801 -37.75940 -36.99843 -35.08971 -33.94209 -32.59552 -31.21204 -30.46160 -28.80599 -28.23999 -25.95288 -24.82545 -23.94719 -23.02146 -21.48672 -21.02985 -19.57222 -19.19849 -18.32292 -17.68460 -16.63569 -16.33476 -16.17716 -15.82014 -15.52579 -14.92291 -14.36857 -14.17468 -14.08592 -13.37432 -13.30676 -13.15820 -12.92227 -12.63716 -12.55641 -12.28618 -12.20993 -12.17237 -11.96089 -11.84469 -11.62558 -11.51848 -11.41811 -11.20040 -10.89185 -10.77820 -10.73564 -10.56738 -10.44700 -9.60524 -9.31621 -9.22110 -8.52493 -8.43225 -7.49561 -7.18890 -6.49644 -4.93439 0.33792 1.10548 1.47613 2.09597 2.51567 2.69378 2.81668 2.85582 3.10763 3.28050 3.36203 3.45062 3.53695 4.22996 4.32642 4.39014 4.43081 4.82646 5.04490 5.35356 5.49301 5.56423 5.73937 5.86192 5.94451 5.98357 6.02353 6.10577 6.15660 6.22320 6.32302 6.38420 6.40892 6.49497 6.55988 6.61893 6.70715 6.79646 6.96569 7.06117 7.27074 7.44859 7.77551 7.97217 8.01444 8.30060 8.46323 8.91299 9.78448 Molecular weight = 342.08amu Principal moments of inertia in cm(-1) A = 0.016111 B = 0.003094 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.528413 B = 9046.988205 C =10617.789118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.043 4.043 3 C -0.120 4.120 4 C -0.245 4.245 5 C 0.185 3.815 6 C -0.218 4.218 7 N -0.404 5.404 8 C 0.236 3.764 9 C -0.122 4.122 10 C -0.118 4.118 11 C -0.136 4.136 12 C -0.272 4.272 13 S 0.256 5.744 14 O -0.289 6.289 15 C 0.472 3.528 16 O -0.485 6.485 17 C 0.107 3.893 18 C -0.074 4.074 19 N -0.220 5.220 20 C -0.356 4.356 21 H 0.114 0.886 22 C 0.058 3.942 23 N -0.805 5.805 24 Si 0.930 3.070 25 H -0.265 1.265 26 H -0.261 1.261 27 H -0.274 1.274 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.153 0.847 32 H 0.135 0.865 33 H 0.147 0.853 34 H 0.138 0.862 35 H 0.165 0.835 36 H 0.086 0.914 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.125 7.787 2.475 9.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.147 4.147 3 C -0.141 4.141 4 C -0.250 4.250 5 C 0.163 3.837 6 C -0.330 4.330 7 N -0.132 5.132 8 C 0.026 3.974 9 C -0.241 4.241 10 C -0.152 4.152 11 C -0.167 4.167 12 C -0.410 4.410 13 S 0.523 5.477 14 O -0.193 6.193 15 C 0.321 3.679 16 O -0.376 6.376 17 C -0.026 4.026 18 C -0.131 4.131 19 N 0.124 4.876 20 C -0.484 4.484 21 H 0.132 0.868 22 C -0.157 4.157 23 N -0.433 5.433 24 Si 0.753 3.247 25 H -0.190 1.190 26 H -0.185 1.185 27 H -0.199 1.199 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.170 0.830 32 H 0.152 0.848 33 H 0.164 0.836 34 H 0.156 0.844 35 H 0.182 0.818 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.368 5.734 2.221 8.852 hybrid contribution 1.751 0.856 -0.073 1.950 sum -4.617 6.590 2.148 8.329 Atomic orbital electron populations 1.20109 0.89124 1.02418 1.01166 1.20556 0.93749 0.86443 1.13951 1.22237 0.90844 0.97690 1.03363 1.18263 0.93078 0.91118 1.22571 1.20741 0.97039 0.88988 0.76931 1.20756 0.88284 0.94214 1.29786 1.70937 1.28719 1.00190 1.13346 1.21133 0.78950 0.90791 1.06567 1.21830 0.95738 0.93135 1.13438 1.20713 1.00688 0.90671 1.03113 1.19847 0.90983 1.01186 1.04726 1.25271 1.03134 1.00271 1.12334 1.83325 0.96384 1.00979 1.67059 1.84818 1.20331 1.35513 1.78604 1.21603 0.89207 0.81128 0.75924 1.90874 1.14846 1.80614 1.51265 1.21110 0.86083 0.92572 1.02814 1.20381 0.92622 0.97138 1.02924 1.40136 1.03715 1.05282 1.38460 1.19986 1.18300 0.82295 1.27791 0.86830 1.25663 0.95423 1.02124 0.92527 1.69986 1.24076 1.37562 1.11660 0.85865 0.80183 0.79745 0.78940 1.18962 1.18456 1.19926 0.92458 0.91537 0.91602 0.82978 0.84774 0.83577 0.84399 0.81789 0.89558 0.92365 0.91731 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.19 10.07 36.01 0.36 -0.83 16 2 C -0.04 -0.89 6.80 -81.67 -0.56 -1.45 16 3 C -0.12 -2.53 9.98 -37.37 -0.37 -2.90 16 4 C -0.25 -5.21 6.09 -104.84 -0.64 -5.85 16 5 C 0.18 3.68 9.76 -38.21 -0.37 3.31 16 6 C -0.22 -4.55 6.90 -82.20 -0.57 -5.12 16 7 N -0.40 -8.13 8.53 -8.03 -0.07 -8.20 16 8 C 0.24 4.47 7.91 -14.56 -0.12 4.35 16 9 C -0.12 -1.90 6.46 -36.77 -0.24 -2.14 16 10 C -0.12 -1.56 10.22 -40.36 -0.41 -1.97 16 11 C -0.14 -1.47 10.15 -41.38 -0.42 -1.89 16 12 C -0.27 -2.82 10.91 29.13 0.32 -2.50 16 13 S 0.26 3.23 23.03 -107.50 -2.48 0.76 16 14 O -0.29 -5.88 10.69 -21.78 -0.23 -6.11 16 15 C 0.47 10.17 8.86 34.37 0.30 10.48 16 16 O -0.48 -11.16 18.05 -18.89 -0.34 -11.50 16 17 C 0.11 2.31 6.38 -80.78 -0.52 1.80 16 18 C -0.07 -1.39 8.34 36.01 0.30 -1.09 16 19 N -0.22 -4.90 2.73 -53.15 -0.15 -5.04 16 20 C -0.36 -7.77 8.80 -14.88 -0.13 -7.90 16 21 H 0.11 2.36 7.92 -52.48 -0.42 1.95 16 22 C 0.06 1.22 3.88 -17.50 -0.07 1.15 16 23 N -0.81 -17.83 10.78 55.50 0.60 -17.23 16 24 Si 0.93 16.05 29.60 -169.99 -5.03 11.01 16 25 H -0.26 -4.53 7.11 56.52 0.40 -4.12 16 26 H -0.26 -4.44 7.11 56.52 0.40 -4.04 16 27 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.12 7.65 -51.93 -0.40 0.72 16 31 H 0.15 3.08 6.26 -52.49 -0.33 2.75 16 32 H 0.13 2.36 7.56 -52.49 -0.40 1.96 16 33 H 0.15 1.80 8.06 -52.48 -0.42 1.38 16 34 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.09 1.68 6.97 -51.93 -0.36 1.32 16 37 H 0.06 0.93 7.57 -51.93 -0.39 0.54 16 38 H 0.06 1.22 7.02 -51.93 -0.36 0.86 16 39 H 0.29 5.87 8.31 -40.82 -0.34 5.53 16 LS Contribution 355.99 15.07 5.36 5.36 Total: -1.00 -27.12 355.99 -9.36 -36.48 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -3.91 Total: 7.01 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -3.12 Total: -12.54 kcal Atomic # 7 Polarization: -30.86 SS G_CDS: 0.38 Total: -30.47 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.57 Total: -17.61 kcal Atomic # 14 Polarization: 16.05 SS G_CDS: -5.03 Total: 11.01 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -2.48 Total: 0.76 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.12 -9.36 -36.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058023252.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.317 kcal (2) G-P(sol) polarization free energy of solvation -27.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds