Wall clock time and date at job start Tue Mar 31 2020 07:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00182 * 2 1 4 4 H 1.48504 * 109.47175 * 269.99666 * 3 2 1 5 5 H 1.48506 * 109.47222 * 29.99550 * 3 2 1 6 6 H 1.48503 * 109.47542 * 149.99555 * 3 2 1 7 7 C 1.37876 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00532 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99570 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47124 * 179.97438 * 9 7 2 11 11 C 1.33870 * 124.19668 * 89.97654 * 10 9 7 12 12 O 1.21539 * 123.79201 * 0.03537 * 11 10 9 13 13 N 1.34697 * 112.41795 * 180.02562 * 11 10 9 14 14 C 1.46815 * 106.40601 * 359.97438 * 13 11 10 15 15 C 1.52565 * 110.50365 * 118.58969 * 14 13 11 16 16 C 1.53216 * 109.20597 * 66.38407 * 15 14 13 17 17 C 1.53046 * 109.20382 * 56.80499 * 16 15 14 18 18 N 1.46851 * 109.63027 * 300.39014 * 17 16 15 19 19 C 1.46902 * 110.99906 * 186.20285 * 18 17 16 20 20 C 1.50706 * 109.46677 * 66.04717 * 19 18 17 21 21 C 1.38238 * 119.99744 * 90.00251 * 20 19 18 22 22 C 1.38234 * 119.99693 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00240 * 359.97438 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.26327 * 23 22 21 25 25 C 1.38234 * 120.00173 * 269.97633 * 20 19 18 26 26 C 1.46952 * 111.14399 * 62.14966 * 18 17 16 27 27 C 1.34934 * 124.19663 * 270.01575 * 10 9 7 28 28 O 1.21227 * 127.26400 * 0.02562 * 27 10 9 29 29 H 0.97010 * 119.99506 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47257 * 59.99721 * 9 7 2 31 31 H 1.09001 * 109.47100 * 300.00000 * 9 7 2 32 32 H 0.96996 * 126.79142 * 179.97438 * 13 11 10 33 33 H 1.08998 * 109.51676 * 306.45982 * 15 14 13 34 34 H 1.09009 * 109.51483 * 186.29571 * 15 14 13 35 35 H 1.09005 * 109.51598 * 296.89061 * 16 15 14 36 36 H 1.08992 * 109.51998 * 176.72759 * 16 15 14 37 37 H 1.09005 * 109.44362 * 180.34076 * 17 16 15 38 38 H 1.08999 * 109.44161 * 60.44307 * 17 16 15 39 39 H 1.08997 * 109.47133 * 306.05425 * 19 18 17 40 40 H 1.08995 * 109.47172 * 186.04878 * 19 18 17 41 41 H 1.07997 * 119.99846 * 359.97438 * 21 20 19 42 42 H 1.07999 * 119.99751 * 179.97438 * 22 21 20 43 43 H 1.08002 * 119.99744 * 179.97438 * 23 22 21 44 44 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 45 45 H 1.07999 * 120.00025 * 0.02562 * 25 20 19 46 46 H 1.09000 * 109.45226 * 59.21226 * 26 18 17 47 47 H 1.08996 * 109.44857 * 179.14399 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6126 0.0005 11 6 2.6922 -4.1843 1.1078 12 8 2.3961 -3.8381 2.2346 13 7 3.5493 -5.1862 0.8328 14 6 3.6257 -5.2768 -0.6305 15 6 5.0500 -5.0118 -1.1088 16 6 5.9631 -6.1425 -0.6236 17 6 5.4193 -7.4808 -1.1291 18 7 4.0581 -7.6851 -0.6176 19 6 3.5617 -9.0241 -0.9620 20 6 4.3770 -10.0638 -0.2371 21 6 3.9887 -10.4953 1.0175 22 6 4.7362 -11.4494 1.6822 23 6 5.8717 -11.9723 1.0922 24 6 6.2627 -11.5372 -0.1602 25 6 5.5127 -10.5864 -0.8269 26 6 3.1455 -6.6429 -1.1081 27 6 2.6960 -4.1889 -1.1155 28 8 2.4461 -3.8954 -2.2649 29 1 -0.4850 0.8402 -0.0004 30 1 0.6247 -2.5570 -0.8896 31 1 0.6240 -2.5566 0.8903 32 1 4.0225 -5.7386 1.4746 33 1 5.3995 -4.0622 -0.7036 34 1 5.0670 -4.9722 -2.1980 35 1 5.9883 -6.1480 0.4662 36 1 6.9702 -5.9889 -1.0110 37 1 6.0629 -8.2888 -0.7810 38 1 5.4006 -7.4764 -2.2190 39 1 3.6494 -9.1786 -2.0374 40 1 2.5162 -9.1112 -0.6664 41 1 3.1014 -10.0871 1.4783 42 1 4.4331 -11.7862 2.6626 43 1 6.4559 -12.7174 1.6118 44 1 7.1522 -11.9425 -0.6194 45 1 5.8161 -10.2492 -1.8070 46 1 3.1266 -6.6605 -2.1978 47 1 2.1422 -6.8294 -0.7250 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058179274.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:04 Heat of formation + Delta-G solvation = -11.786221 kcal Electronic energy + Delta-G solvation = -30439.643050 eV Core-core repulsion = 26394.908138 eV Total energy + Delta-G solvation = -4044.734912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.06565 -39.85299 -38.44750 -37.79464 -35.49594 -34.64653 -33.31297 -32.25032 -31.41883 -31.17324 -29.71149 -27.78958 -26.68279 -24.46480 -23.48471 -23.21172 -22.82660 -22.10904 -21.19167 -19.93384 -19.53252 -17.34694 -17.05802 -16.84168 -16.46006 -15.86848 -15.64986 -15.56837 -15.28523 -15.08741 -14.90847 -14.61861 -14.32757 -14.17467 -13.78606 -13.69668 -13.63238 -13.37700 -13.01501 -12.81012 -12.74334 -12.50937 -12.27378 -12.11808 -11.53201 -11.46231 -11.24838 -11.18533 -11.11779 -11.07361 -10.82381 -10.75081 -10.39860 -10.00716 -9.86062 -9.42644 -9.16934 -9.08180 -9.07391 -8.57569 -8.52896 -8.50738 -6.13371 -4.18358 1.04302 1.14285 2.20018 2.98647 3.29864 3.34837 3.35790 3.39897 3.63589 3.76351 3.92278 4.36108 4.41412 4.43851 4.52291 4.57314 4.63224 4.73650 4.82527 4.87665 4.96541 5.01463 5.21744 5.22882 5.23431 5.30671 5.37053 5.38192 5.43525 5.51316 5.65457 5.71730 5.72901 5.77975 5.97293 6.01486 6.09781 6.17667 6.24990 6.34638 6.60432 6.67015 6.75533 6.76457 7.08430 7.22461 7.33756 7.79497 7.99358 8.03780 8.09833 8.76474 8.91045 9.46407 10.96057 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.024090 B = 0.002563 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.038593 B =10920.013055 C =11181.451732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.533 4.533 8 H 0.059 0.941 9 C 0.249 3.751 10 N -0.556 5.556 11 C 0.698 3.302 12 O -0.541 6.541 13 N -0.717 5.717 14 C 0.127 3.873 15 C -0.116 4.116 16 C -0.112 4.112 17 C 0.047 3.953 18 N -0.528 5.528 19 C 0.093 3.907 20 C -0.075 4.075 21 C -0.096 4.096 22 C -0.121 4.121 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.114 4.114 26 C 0.065 3.935 27 C 0.528 3.472 28 O -0.472 6.472 29 H 0.266 0.734 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.434 0.566 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.037 0.963 39 H 0.046 0.954 40 H 0.086 0.914 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.059 0.941 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.600 -24.429 -2.242 27.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.571 4.571 8 H 0.078 0.922 9 C 0.131 3.869 10 N -0.300 5.300 11 C 0.399 3.601 12 O -0.415 6.415 13 N -0.383 5.383 14 C 0.035 3.965 15 C -0.155 4.155 16 C -0.150 4.150 17 C -0.081 4.081 18 N -0.252 5.252 19 C -0.034 4.034 20 C -0.075 4.075 21 C -0.115 4.115 22 C -0.139 4.139 23 C -0.140 4.140 24 C -0.141 4.141 25 C -0.133 4.133 26 C -0.064 4.064 27 C 0.313 3.687 28 O -0.343 6.343 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.278 0.722 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.104 0.896 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.077 0.923 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.023 -23.782 -1.760 26.706 hybrid contribution 0.647 0.661 -0.549 1.076 sum 12.670 -23.121 -2.309 26.466 Atomic orbital electron populations 1.69926 1.06004 1.27399 1.49575 1.24897 0.94963 0.99349 0.94582 0.86395 0.79764 0.82516 0.78191 1.20417 1.20891 1.19767 1.21241 0.93368 0.90141 1.52397 0.92239 1.19596 0.86625 0.80791 0.99852 1.46880 1.42954 1.33918 1.06205 1.16098 0.79347 0.79711 0.84930 1.90954 1.63250 1.66499 1.20778 1.45466 1.49088 1.37573 1.06142 1.20938 0.97275 0.95318 0.83018 1.21716 0.91633 1.00116 1.02028 1.21565 0.98415 0.92977 1.02004 1.22283 0.89950 0.98455 0.97395 1.61892 1.02210 1.01017 1.60064 1.21036 0.98513 0.86534 0.97269 1.19710 0.95858 0.96806 0.95170 1.21069 0.99941 0.96422 0.94068 1.21178 0.95494 0.97296 0.99940 1.21154 0.97063 1.00139 0.95663 1.21105 0.99809 0.97757 0.95398 1.21063 0.94975 0.97312 0.99946 1.22093 0.96773 0.88775 0.98730 1.20341 0.80383 0.82413 0.85593 1.90730 1.59916 1.65538 1.18073 0.92423 0.93071 0.92776 0.72165 0.90189 0.89821 0.90785 0.90642 0.89872 0.94449 0.93586 0.89561 0.85832 0.86115 0.86323 0.86256 0.86357 0.92306 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -15.36 9.39 -34.44 -0.32 -15.69 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.25 6.65 5.46 -5.19 -0.03 6.62 16 10 N -0.56 -12.43 2.59 -122.10 -0.32 -12.75 16 11 C 0.70 14.51 8.63 -87.80 -0.76 13.75 16 12 O -0.54 -13.25 17.49 5.33 0.09 -13.16 16 13 N -0.72 -10.88 5.55 -53.86 -0.30 -11.18 16 14 C 0.13 1.80 0.87 -133.09 -0.12 1.69 16 15 C -0.12 -1.40 5.05 -26.84 -0.14 -1.54 16 16 C -0.11 -1.02 5.98 -26.60 -0.16 -1.18 16 17 C 0.05 0.40 5.15 -3.83 -0.02 0.38 16 18 N -0.53 -4.98 4.60 -236.37 -1.09 -6.07 16 19 C 0.09 0.77 5.12 -4.97 -0.03 0.74 16 20 C -0.07 -0.62 4.89 -104.62 -0.51 -1.13 16 21 C -0.10 -0.81 9.70 -39.58 -0.38 -1.19 16 22 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 23 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 24 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 25 C -0.11 -0.86 7.88 -39.58 -0.31 -1.18 16 26 C 0.07 0.76 4.48 -4.06 -0.02 0.74 16 27 C 0.53 10.33 6.95 -10.72 -0.07 10.26 16 28 O -0.47 -10.34 17.77 5.60 0.10 -10.24 16 29 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.05 1.42 8.01 -51.93 -0.42 1.01 16 31 H 0.05 1.54 7.86 -51.93 -0.41 1.13 16 32 H 0.43 5.63 8.46 -40.82 -0.35 5.29 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 35 H 0.07 0.70 7.51 -51.93 -0.39 0.31 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.67 5.72 -51.93 -0.30 0.37 16 38 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.05 0.35 8.06 -51.93 -0.42 -0.07 16 40 H 0.09 0.69 7.94 -51.93 -0.41 0.28 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 44 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.12 0.75 7.94 -52.49 -0.42 0.33 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.09 1.04 8.03 -51.93 -0.42 0.63 16 LS Contribution 385.93 15.07 5.82 5.82 Total: -1.00 -33.42 385.93 -11.01 -44.43 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.87 Total: 1.66 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: -4.16 Total: 10.16 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.97 Total: -55.65 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: 0.19 Total: -23.40 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.42 -11.01 -44.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058179274.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.640 kcal (2) G-P(sol) polarization free energy of solvation -33.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds