Wall clock time and date at job start Tue Mar 31 2020 06:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34693 * 117.00502 * 2 1 4 4 O 1.21442 * 119.99675 * 0.02562 * 3 2 1 5 5 C 1.47921 * 119.99977 * 180.02562 * 3 2 1 6 6 C 1.39609 * 120.00087 * 180.02562 * 5 3 2 7 7 C 1.37816 * 119.99043 * 180.27597 * 6 5 3 8 8 C 1.39554 * 120.00589 * 359.46906 * 7 6 5 9 9 C 1.48041 * 119.99314 * 180.27504 * 8 7 6 10 10 O 1.21535 * 119.99919 * 150.06151 * 9 8 7 11 11 N 1.34780 * 120.00469 * 330.06122 * 9 8 7 12 12 C 1.46494 * 119.99344 * 6.19283 * 11 9 8 13 13 C 1.50697 * 109.47149 * 98.27186 * 12 11 9 14 14 H 1.07997 * 120.00434 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99938 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00416 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 120.00055 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46923 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47181 * 120.00027 * 17 15 13 20 20 H 1.48501 * 109.46771 * 240.00039 * 17 15 13 21 21 C 1.46502 * 119.99964 * 186.19231 * 11 9 8 22 22 C 1.50700 * 109.46946 * 90.20281 * 21 11 9 23 23 C 1.34512 * 125.79317 * 89.99875 * 22 21 11 24 24 C 1.41376 * 106.83835 * 179.97438 * 23 22 21 25 25 C 1.34506 * 106.84318 * 359.97438 * 24 23 22 26 26 O 1.34298 * 108.42390 * 359.73528 * 25 24 23 27 27 C 1.39555 * 120.01112 * 0.55424 * 8 7 6 28 28 C 1.37813 * 120.00611 * 359.70223 * 27 8 7 29 29 H 1.09005 * 109.47091 * 59.99915 * 1 2 3 30 30 H 1.08999 * 109.47491 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46986 * 299.99943 * 1 2 3 32 32 H 1.07990 * 120.00466 * 0.02562 * 6 5 3 33 33 H 1.07996 * 119.99268 * 179.72787 * 7 6 5 34 34 H 1.09006 * 109.46690 * 218.27069 * 12 11 9 35 35 H 1.08999 * 109.47484 * 338.26434 * 12 11 9 36 36 H 0.97000 * 120.00837 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.46273 * 210.19580 * 21 11 9 38 38 H 1.08995 * 109.47283 * 330.19517 * 21 11 9 39 39 H 1.08002 * 126.57629 * 359.96142 * 23 22 21 40 40 H 1.08005 * 126.57424 * 179.97438 * 24 23 22 41 41 H 1.08010 * 125.78644 * 180.02562 * 25 24 23 42 42 H 1.07998 * 119.99957 * 179.72091 * 27 8 7 43 43 H 1.08002 * 120.00469 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2001 0.0000 4 8 1.4022 2.2186 0.0005 5 6 3.5407 1.2774 -0.0006 6 6 4.1747 2.5212 0.0000 7 6 5.5510 2.5930 -0.0063 8 6 6.3109 1.4225 -0.0020 9 6 7.7892 1.4999 -0.0026 10 8 8.4439 0.6229 0.5259 11 7 8.4093 2.5430 -0.5892 12 6 7.6232 3.6659 -1.1060 13 6 7.6239 4.7858 -0.0977 14 1 8.1562 4.6723 0.8351 15 6 6.9448 5.9554 -0.3659 16 7 6.2968 6.0939 -1.5019 17 14 6.9450 7.3434 0.8843 18 1 7.7409 6.9401 2.0714 19 1 7.5442 8.5580 0.2754 20 1 5.5496 7.6350 1.3003 21 6 9.8693 2.5537 -0.7099 22 6 10.2702 1.9125 -2.0134 23 6 10.4316 2.5499 -3.1869 24 6 10.8081 1.5718 -4.1358 25 6 10.8549 0.3954 -3.4854 26 8 10.5342 0.6087 -2.1988 27 6 5.6774 0.1790 -0.0030 28 6 4.3011 0.1066 -0.0021 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.5867 3.4270 0.0012 33 1 6.0414 3.5552 -0.0103 34 1 8.0622 4.0174 -2.0398 35 1 6.5988 3.3399 -1.2863 36 1 5.8188 6.9166 -1.6906 37 1 10.2282 3.5827 -0.6857 38 1 10.3065 1.9968 0.1187 39 1 10.2988 3.6061 -3.3692 40 1 11.0180 1.7376 -5.1822 41 1 11.1118 -0.5582 -3.9226 42 1 6.2656 -0.7267 -0.0043 43 1 3.8109 -0.8557 -0.0025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058192327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:41 Heat of formation + Delta-G solvation = -47.866702 kcal Electronic energy + Delta-G solvation = -29588.899191 eV Core-core repulsion = 25374.473866 eV Total energy + Delta-G solvation = -4214.425325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.130 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.22613 -40.52705 -39.74753 -37.74766 -36.34343 -35.55853 -33.12501 -32.59209 -31.80499 -30.74124 -29.99827 -27.87512 -27.61938 -25.92623 -24.14503 -23.07058 -22.29077 -21.38675 -21.05517 -20.31030 -19.16141 -17.87993 -17.25876 -17.09046 -16.69734 -16.42339 -16.32857 -16.09009 -15.34499 -14.80300 -14.70409 -14.58234 -14.22673 -14.02063 -13.65574 -13.44699 -13.30475 -13.11596 -12.68801 -12.51717 -12.45621 -12.42725 -12.20690 -12.18451 -12.01499 -11.40558 -11.33684 -11.03981 -10.95917 -10.84966 -10.51414 -10.39931 -10.00168 -9.92934 -9.62177 -9.35240 -8.87005 -8.76009 -8.42390 -8.21442 -8.00025 -6.38858 -4.50086 0.69252 1.69834 1.97596 2.50922 2.68717 2.86305 3.13367 3.21937 3.23945 3.26733 3.48824 3.81510 4.14539 4.22709 4.75518 4.91703 4.99544 5.00507 5.07932 5.09566 5.19767 5.24183 5.31550 5.35651 5.40167 5.66466 5.69687 5.76038 6.00546 6.07283 6.08111 6.23125 6.26000 6.37874 6.38091 6.45834 6.50313 6.73742 6.79403 6.83742 7.03429 7.20824 7.29750 7.47096 7.56093 7.78277 7.78963 8.08453 8.57252 8.75590 9.19337 10.65573 Molecular weight = 343.13amu Principal moments of inertia in cm(-1) A = 0.008078 B = 0.004179 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3465.256702 B = 6698.642846 C = 9193.965500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.509 3.491 4 O -0.504 6.504 5 C -0.116 4.116 6 C -0.065 4.065 7 C -0.106 4.106 8 C -0.095 4.095 9 C 0.556 3.444 10 O -0.555 6.555 11 N -0.583 5.583 12 C 0.205 3.795 13 C -0.552 4.552 14 H 0.069 0.931 15 C 0.071 3.929 16 N -0.877 5.877 17 Si 0.896 3.104 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.279 1.279 21 C 0.196 3.804 22 C -0.018 4.018 23 C -0.199 4.199 24 C -0.217 4.217 25 C -0.051 4.051 26 O -0.169 6.169 27 C -0.085 4.085 28 C -0.088 4.088 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.140 0.860 33 H 0.212 0.788 34 H 0.038 0.962 35 H 0.069 0.931 36 H 0.270 0.730 37 H 0.116 0.884 38 H 0.093 0.907 39 H 0.150 0.850 40 H 0.144 0.856 41 H 0.197 0.803 42 H 0.134 0.866 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.985 -9.878 -1.804 10.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.354 3.646 4 O -0.393 6.393 5 C -0.118 4.118 6 C -0.084 4.084 7 C -0.123 4.123 8 C -0.098 4.098 9 C 0.345 3.655 10 O -0.435 6.435 11 N -0.313 5.313 12 C 0.086 3.914 13 C -0.590 4.590 14 H 0.088 0.912 15 C -0.135 4.135 16 N -0.513 5.513 17 Si 0.723 3.277 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.204 1.204 21 C 0.073 3.927 22 C -0.070 4.070 23 C -0.219 4.219 24 C -0.236 4.236 25 C -0.120 4.120 26 O -0.064 6.064 27 C -0.103 4.103 28 C -0.106 4.106 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.158 0.842 33 H 0.228 0.772 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.134 0.866 38 H 0.111 0.889 39 H 0.167 0.833 40 H 0.162 0.838 41 H 0.213 0.787 42 H 0.152 0.848 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.008 -10.102 -1.414 10.396 hybrid contribution -0.363 1.017 0.062 1.082 sum -2.371 -9.085 -1.352 9.486 Atomic orbital electron populations 1.23250 0.76343 1.03525 1.02609 1.86547 1.23283 1.32957 1.84534 1.21436 0.89345 0.81254 0.72526 1.90825 1.66772 1.36004 1.45660 1.19281 0.88339 0.95522 1.08618 1.21367 0.94940 0.96267 0.95781 1.23559 0.93461 1.02795 0.92502 1.20244 0.93609 0.94390 1.01595 1.18371 0.87284 0.81482 0.78340 1.90700 1.66808 1.39968 1.46054 1.48129 1.05820 1.20464 1.56852 1.20412 0.92986 0.82611 0.95349 1.21482 1.34031 0.99204 1.04234 0.91249 1.25000 0.94556 0.98326 0.95572 1.69930 1.31329 1.27465 1.22556 0.86442 0.78356 0.81590 0.81300 1.19340 1.20610 1.20446 1.19723 0.81843 1.00640 0.90541 1.23193 1.03880 0.80957 0.98937 1.21688 1.06883 1.01163 0.92169 1.21800 1.08040 0.92915 1.00830 1.23962 1.05863 1.00250 0.81901 1.84093 1.66591 1.27433 1.28278 1.21125 0.93908 0.97208 0.98095 1.21199 0.93383 0.97601 0.98421 0.91876 0.88137 0.91900 0.84221 0.77181 0.94389 0.91403 0.91993 0.86568 0.88906 0.83256 0.83836 0.78664 0.84789 0.84576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.68 9.80 -40.47 -0.40 -5.08 16 3 C 0.51 8.11 7.90 34.70 0.27 8.38 16 4 O -0.50 -9.15 16.12 -19.22 -0.31 -9.46 16 5 C -0.12 -1.92 5.88 -104.91 -0.62 -2.53 16 6 C -0.07 -1.19 9.58 -39.22 -0.38 -1.57 16 7 C -0.11 -2.09 7.46 -39.25 -0.29 -2.39 16 8 C -0.10 -1.84 5.58 -104.90 -0.59 -2.42 16 9 C 0.56 11.62 7.46 -12.24 -0.09 11.52 16 10 O -0.55 -12.41 16.26 5.33 0.09 -12.33 16 11 N -0.58 -11.83 2.45 -177.48 -0.43 -12.27 16 12 C 0.21 4.51 4.64 -5.20 -0.02 4.48 16 13 C -0.55 -12.90 7.47 -34.44 -0.26 -13.15 16 14 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 15 C 0.07 1.71 5.33 -17.82 -0.10 1.62 16 16 N -0.88 -22.05 13.29 55.43 0.74 -21.31 16 17 Si 0.90 19.07 29.54 -169.99 -5.02 14.05 16 18 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 21 C 0.20 3.53 5.99 -5.19 -0.03 3.50 16 22 C -0.02 -0.32 6.90 -35.63 -0.25 -0.56 16 23 C -0.20 -3.25 10.81 -39.71 -0.43 -3.68 16 24 C -0.22 -3.08 10.91 -39.71 -0.43 -3.51 16 25 C -0.05 -0.72 12.09 29.41 0.36 -0.36 16 26 O -0.17 -2.95 10.65 5.72 0.06 -2.89 16 27 C -0.08 -1.40 9.58 -39.25 -0.38 -1.78 16 28 C -0.09 -1.31 9.60 -39.23 -0.38 -1.68 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.14 2.57 7.64 -52.49 -0.40 2.17 16 33 H 0.21 4.62 3.02 -52.49 -0.16 4.46 16 34 H 0.04 0.88 8.13 -51.93 -0.42 0.46 16 35 H 0.07 1.55 4.07 -51.96 -0.21 1.34 16 36 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 37 H 0.12 1.94 8.07 -51.93 -0.42 1.52 16 38 H 0.09 1.66 7.34 -51.93 -0.38 1.28 16 39 H 0.15 2.34 8.06 -52.49 -0.42 1.92 16 40 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 41 H 0.20 1.88 8.06 -52.48 -0.42 1.45 16 42 H 0.13 2.06 7.92 -52.49 -0.42 1.64 16 43 H 0.14 1.65 7.60 -52.49 -0.40 1.25 16 LS Contribution 375.69 15.07 5.66 5.66 Total: -1.00 -29.13 375.69 -7.04 -36.16 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -4.89 Total: 10.18 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -2.53 Total: -2.72 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.30 Total: -33.58 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.56 Total: -29.75 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.13 -7.04 -36.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058192327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.702 kcal (2) G-P(sol) polarization free energy of solvation -29.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds