Wall clock time and date at job start Tue Mar 31 2020 06:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35967 * 117.00235 * 2 1 4 4 C 1.38552 * 120.08197 * 0.02562 * 3 2 1 5 5 C 1.38243 * 120.01533 * 179.97438 * 4 3 2 6 6 C 1.38282 * 120.17908 * 359.97438 * 5 4 3 7 7 C 1.38199 * 120.16374 * 359.79530 * 6 5 4 8 8 C 1.38722 * 119.98249 * 0.45902 * 7 6 5 9 9 N 1.40123 * 120.08963 * 179.79578 * 8 7 6 10 10 C 1.46764 * 124.34434 * 269.92169 * 9 8 7 11 11 C 1.54480 * 105.53157 * 163.21125 * 10 9 8 12 12 H 1.09004 * 110.97353 * 267.08291 * 11 10 9 13 13 C 1.50700 * 110.96919 * 143.32306 * 11 10 9 14 14 O 1.21295 * 120.00120 * 6.16858 * 13 11 10 15 15 N 1.34780 * 120.00071 * 186.16331 * 13 11 10 16 16 C 1.37096 * 120.00113 * 179.97438 * 15 13 11 17 17 H 1.08001 * 119.99809 * 7.53956 * 16 15 13 18 18 C 1.38945 * 120.00034 * 187.53997 * 16 15 13 19 19 N 1.31408 * 120.00261 * 28.22627 * 18 16 15 20 20 Si 1.86808 * 119.99918 * 208.22667 * 18 16 15 21 21 H 1.48496 * 109.47162 * 59.99880 * 20 18 16 22 22 H 1.48495 * 109.47072 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46709 * 299.99831 * 20 18 16 24 24 C 1.46502 * 119.99990 * 0.02562 * 15 13 11 25 25 C 1.47197 * 109.46998 * 91.30345 * 24 15 13 26 26 N 7.02266 * 134.92878 * 154.35980 * 2 1 3 27 27 C 1.54630 * 101.76919 * 25.20601 * 11 10 9 28 28 C 1.34421 * 124.35206 * 89.73939 * 9 8 7 29 29 O 1.21293 * 124.94043 * 0.43974 * 28 9 8 30 30 H 1.09000 * 109.47439 * 299.99990 * 1 2 3 31 31 H 1.09002 * 109.47011 * 60.00274 * 1 2 3 32 32 H 1.09007 * 109.47239 * 179.97438 * 1 2 3 33 33 H 1.07997 * 119.99244 * 0.02562 * 4 3 2 34 34 H 1.08001 * 119.91094 * 180.02562 * 5 4 3 35 35 H 1.07997 * 119.91554 * 180.02562 * 6 5 4 36 36 H 1.07995 * 120.00828 * 180.23432 * 7 6 5 37 37 H 1.08996 * 110.39469 * 44.10161 * 10 9 8 38 38 H 1.09000 * 110.03669 * 282.13417 * 10 9 8 39 39 H 0.97005 * 120.00359 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.47139 * 211.30317 * 24 15 13 41 41 H 1.09002 * 109.46622 * 331.30458 * 24 15 13 42 42 H 1.08999 * 110.49019 * 216.52488 * 27 11 10 43 43 H 1.09000 * 110.48713 * 93.87813 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2934 2.3746 0.0005 5 6 1.9225 3.6056 0.0011 6 6 3.3032 3.6806 0.0016 7 6 4.0615 2.5252 0.0059 8 6 3.4372 1.2863 0.0000 9 7 4.2038 0.1134 0.0000 10 6 4.6604 -0.5774 -1.2118 11 6 5.7902 -1.5232 -0.7479 12 1 6.7643 -1.0430 -0.8417 13 6 5.7553 -2.8210 -1.5131 14 8 4.9829 -2.9591 -2.4381 15 7 6.5826 -3.8282 -1.1699 16 6 6.5505 -5.0090 -1.8657 17 1 5.9530 -5.0918 -2.7616 18 6 7.2866 -6.0992 -1.4184 19 7 7.5487 -6.2343 -0.1378 20 14 7.9037 -7.3731 -2.6375 21 1 8.7967 -6.7191 -3.6274 22 1 8.6572 -8.4276 -1.9126 23 1 6.7482 -7.9849 -3.3415 24 6 7.5153 -3.6616 -0.0525 25 6 6.8788 -4.1253 1.1911 26 7 6.3885 -4.4824 2.1515 27 6 5.4243 -1.7469 0.7377 28 6 4.6185 -0.5217 1.1098 29 8 4.3772 -0.1671 2.2443 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 0.2148 2.3195 0.0014 34 1 1.3339 4.5111 0.0019 35 1 3.7903 4.6445 0.0024 36 1 5.1396 2.5867 0.0101 37 1 5.0435 0.1407 -1.9368 38 1 3.8417 -1.1518 -1.6451 39 1 8.0629 -6.9952 0.1744 40 1 8.4154 -4.2470 -0.2402 41 1 7.7803 -2.6088 0.0456 42 1 6.3256 -1.8103 1.3474 43 1 4.8220 -2.6484 0.8507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058201616.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:32 Heat of formation + Delta-G solvation = -16.509877 kcal Electronic energy + Delta-G solvation = -30231.686094 eV Core-core repulsion = 26050.913255 eV Total energy + Delta-G solvation = -4180.772839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.136 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.02876 -39.83348 -38.62552 -37.44991 -36.19460 -35.70827 -34.37931 -33.10479 -31.82225 -30.38621 -29.30447 -27.54631 -27.43194 -27.30723 -25.31513 -23.25637 -22.32635 -22.17255 -19.94641 -19.00432 -18.19025 -18.05151 -17.16308 -17.08844 -16.39146 -16.19602 -15.87740 -15.46096 -15.20186 -14.86212 -14.56949 -14.45066 -14.23988 -13.94967 -13.78937 -13.46254 -13.22569 -12.99278 -12.72990 -12.56776 -12.52142 -12.28895 -12.00200 -11.81844 -11.67918 -11.42018 -11.28858 -11.25754 -11.17891 -11.15640 -10.95638 -10.59836 -10.47578 -10.32726 -9.79463 -9.30196 -9.05642 -8.79834 -8.63263 -8.29892 -8.20928 -6.62833 -4.01755 1.04722 1.25786 2.76095 2.99105 3.05111 3.18322 3.19429 3.21858 3.42907 3.51138 3.71831 3.97025 4.06296 4.50519 4.60577 4.64253 4.70819 4.76996 4.87407 4.91508 5.01202 5.02798 5.13971 5.18227 5.19824 5.32530 5.36139 5.39290 5.52819 5.57124 5.73609 5.80927 5.97408 6.04120 6.09769 6.15466 6.27046 6.30602 6.43480 6.48461 6.80343 7.16319 7.31533 7.39493 7.75814 8.17829 8.38631 8.74495 8.89865 9.10460 9.61456 10.42625 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.018974 B = 0.003052 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.333761 B = 9173.600847 C = 9486.263326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.303 6.303 3 C 0.137 3.863 4 C -0.207 4.207 5 C -0.077 4.077 6 C -0.153 4.153 7 C -0.071 4.071 8 C 0.117 3.883 9 N -0.573 5.573 10 C 0.127 3.873 11 C -0.115 4.115 12 H 0.109 0.891 13 C 0.459 3.541 14 O -0.569 6.569 15 N -0.434 5.434 16 C -0.322 4.322 17 H 0.114 0.886 18 C 0.037 3.963 19 N -0.865 5.865 20 Si 0.924 3.076 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.217 3.783 25 C 0.243 3.757 26 N -0.465 5.465 27 C -0.143 4.143 28 C 0.530 3.470 29 O -0.526 6.526 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.276 0.724 40 H 0.126 0.874 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.903 17.153 -2.125 17.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.215 6.215 3 C 0.090 3.910 4 C -0.226 4.226 5 C -0.095 4.095 6 C -0.172 4.172 7 C -0.091 4.091 8 C 0.027 3.973 9 N -0.304 5.304 10 C 0.006 3.994 11 C -0.137 4.137 12 H 0.127 0.873 13 C 0.247 3.753 14 O -0.452 6.452 15 N -0.153 5.153 16 C -0.449 4.449 17 H 0.131 0.869 18 C -0.168 4.168 19 N -0.503 5.503 20 Si 0.750 3.250 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.198 1.198 24 C 0.089 3.911 25 C -0.075 4.075 26 N -0.145 5.145 27 C -0.184 4.184 28 C 0.319 3.681 29 O -0.402 6.402 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.151 0.849 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.144 0.856 41 H 0.103 0.897 42 H 0.124 0.876 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.982 16.393 -0.447 17.456 hybrid contribution 0.284 -0.670 -0.763 1.055 sum -5.698 15.723 -1.210 16.767 Atomic orbital electron populations 1.23099 0.78384 1.04282 1.01069 1.86223 1.21288 1.26146 1.87886 1.19404 0.91587 0.84940 0.95087 1.21158 1.00091 0.91948 1.09381 1.20979 0.94686 0.96896 0.96969 1.20936 0.93759 0.98031 1.04440 1.21201 1.00459 0.90547 0.96866 1.16728 0.86407 0.86184 1.08022 1.45521 1.52365 1.24181 1.08320 1.22029 0.97506 0.94342 0.85564 1.22160 1.00276 0.96711 0.94600 0.87258 1.19408 0.83170 0.85275 0.87460 1.90561 1.40268 1.82396 1.31991 1.43660 1.31745 1.13134 1.26736 1.19706 1.29463 0.87898 1.07804 0.86862 1.25227 0.97505 0.98117 0.95939 1.69920 1.37137 1.30915 1.12319 0.86027 0.79342 0.79303 0.80348 1.19601 1.21036 1.19757 1.18900 0.93949 0.99306 0.78946 1.29075 0.93489 0.91251 0.93665 1.80945 1.08817 1.10918 1.13790 1.22541 1.01928 0.97833 0.96092 1.20978 0.78958 0.84202 0.83953 1.90697 1.58687 1.69743 1.21049 0.92703 0.92574 0.88038 0.85090 0.85545 0.85377 0.84926 0.89981 0.88779 0.91326 0.85596 0.89668 0.87588 0.87153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.30 -4.57 10.24 -19.64 -0.20 -4.77 16 3 C 0.14 1.96 6.70 -39.07 -0.26 1.69 16 4 C -0.21 -2.26 9.04 -39.46 -0.36 -2.62 16 5 C -0.08 -0.73 10.04 -39.56 -0.40 -1.12 16 6 C -0.15 -1.50 10.04 -39.58 -0.40 -1.89 16 7 C -0.07 -0.86 9.96 -39.42 -0.39 -1.25 16 8 C 0.12 1.74 5.40 -83.49 -0.45 1.29 16 9 N -0.57 -9.21 2.70 -112.12 -0.30 -9.52 16 10 C 0.13 1.95 6.60 -3.12 -0.02 1.93 16 11 C -0.12 -1.83 2.56 -90.14 -0.23 -2.06 16 12 H 0.11 1.35 7.57 -51.93 -0.39 0.95 16 13 C 0.46 9.48 6.94 -10.98 -0.08 9.40 16 14 O -0.57 -13.65 15.16 5.54 0.08 -13.57 16 15 N -0.43 -9.40 2.59 -117.93 -0.30 -9.71 16 16 C -0.32 -7.88 9.40 -14.94 -0.14 -8.02 16 17 H 0.11 2.95 7.33 -52.49 -0.38 2.57 16 18 C 0.04 0.87 4.82 -17.47 -0.08 0.79 16 19 N -0.87 -20.83 9.27 55.50 0.51 -20.32 16 20 Si 0.92 18.81 29.64 -169.99 -5.04 13.77 16 21 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 22 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 C 0.22 4.02 4.75 -6.83 -0.03 3.98 16 25 C 0.24 5.16 10.01 -20.77 -0.21 4.96 16 26 N -0.46 -10.83 18.54 42.15 0.78 -10.05 16 27 C -0.14 -2.47 4.25 -26.74 -0.11 -2.59 16 28 C 0.53 9.71 7.99 -10.86 -0.09 9.62 16 29 O -0.53 -11.32 17.71 5.55 0.10 -11.22 16 30 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 31 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.13 1.11 6.30 -52.49 -0.33 0.78 16 34 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.09 1.67 7.06 -51.93 -0.37 1.30 16 39 H 0.28 6.47 8.31 -40.82 -0.34 6.13 16 40 H 0.13 2.39 6.44 -51.93 -0.33 2.06 16 41 H 0.09 1.18 5.85 -51.93 -0.30 0.87 16 42 H 0.11 1.70 6.18 -51.93 -0.32 1.38 16 43 H 0.11 2.22 7.21 -51.93 -0.37 1.85 16 LS Contribution 363.49 15.07 5.48 5.48 Total: -1.00 -33.25 363.49 -6.00 -39.25 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -4.85 Total: 5.28 kcal Atomic # 6 Polarization: 17.64 SS G_CDS: -2.26 Total: 15.38 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.69 Total: -49.60 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.02 Total: -29.56 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.04 Total: 13.77 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.25 -6.00 -39.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058201616.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.743 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds