Wall clock time and date at job start Tue Mar 31 2020 05:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99677 * 2 1 4 4 C 1.50702 * 109.47051 * 270.00077 * 3 2 1 5 5 H 1.08003 * 120.00081 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99700 * 180.02562 * 4 3 2 7 7 N 1.31507 * 120.00378 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99485 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.46933 * 90.00341 * 8 6 4 10 10 H 1.48503 * 109.46838 * 210.00004 * 8 6 4 11 11 H 1.48490 * 109.47520 * 330.00107 * 8 6 4 12 12 C 1.34776 * 120.00128 * 180.02562 * 2 1 3 13 13 O 1.21671 * 119.99865 * 180.94936 * 12 2 1 14 14 C 1.46910 * 119.99988 * 0.94090 * 12 2 1 15 15 C 1.35922 * 125.44227 * 167.46348 * 14 12 2 16 16 C 1.41519 * 107.75983 * 179.85112 * 15 14 12 17 17 C 1.40193 * 133.26462 * 180.14297 * 16 15 14 18 18 C 1.36299 * 119.90621 * 180.30376 * 17 16 15 19 19 C 1.39477 * 120.55817 * 359.96944 * 18 17 16 20 20 O 1.35835 * 119.74065 * 180.02562 * 19 18 17 21 21 C 1.42897 * 117.00081 * 359.97438 * 20 19 18 22 22 F 1.39904 * 109.47163 * 60.00175 * 21 20 19 23 23 F 1.39898 * 109.47198 * 179.97438 * 21 20 19 24 24 F 1.39899 * 109.47732 * 300.00136 * 21 20 19 25 25 C 1.38216 * 120.51597 * 0.04878 * 19 18 17 26 26 C 1.39081 * 119.77373 * 359.95500 * 25 19 18 27 27 N 1.37523 * 133.10877 * 180.02562 * 26 25 19 28 28 H 0.97003 * 125.62654 * 359.95939 * 27 26 25 29 29 H 1.09003 * 109.46860 * 263.61281 * 1 2 3 30 30 H 1.08997 * 109.47574 * 23.61065 * 1 2 3 31 31 H 1.09007 * 109.47174 * 143.61800 * 1 2 3 32 32 H 1.09003 * 109.47207 * 29.99967 * 3 2 1 33 33 H 1.09001 * 109.47051 * 150.00006 * 3 2 1 34 34 H 0.97001 * 120.00165 * 179.97438 * 7 6 4 35 35 H 1.08001 * 126.11983 * 359.97438 * 15 14 12 36 36 H 1.07997 * 120.04750 * 0.31771 * 17 16 15 37 37 H 1.07996 * 119.72616 * 179.97438 * 18 17 16 38 38 H 1.07997 * 120.11027 * 179.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1267 2.8776 -1.6727 7 7 3.5549 3.6172 -0.6732 8 14 3.4374 3.4171 -3.4339 9 1 2.3074 4.2608 -3.8997 10 1 4.6980 4.1995 -3.4969 11 1 3.5535 2.2203 -4.3052 12 6 2.1389 -1.1672 -0.0005 13 8 3.3555 -1.1672 0.0169 14 6 1.4045 -2.4394 -0.0220 15 6 1.9500 -3.6603 -0.2652 16 6 0.9119 -4.6194 -0.1915 17 6 0.8776 -6.0121 -0.3479 18 6 -0.3030 -6.6813 -0.2213 19 6 -1.4817 -5.9922 0.0638 20 8 -2.6490 -6.6758 0.1869 21 6 -2.5926 -8.0928 0.0113 22 9 -1.7303 -8.6468 0.9636 23 9 -3.8727 -8.6339 0.1713 24 9 -2.1193 -8.3853 -1.2723 25 6 -1.4712 -4.6191 0.2216 26 6 -0.2763 -3.9186 0.0962 27 7 0.0465 -2.5855 0.1957 28 1 -0.5757 -1.8662 0.3869 29 1 -0.3633 -0.1143 1.0213 30 1 -0.3634 0.9416 -0.4116 31 1 -0.3634 -0.8274 -0.6096 32 1 1.6083 2.0284 0.5138 33 1 3.1499 1.1385 0.5138 34 1 4.0323 4.4428 -0.8504 35 1 2.9900 -3.8627 -0.4750 36 1 1.7855 -6.5541 -0.5680 37 1 -0.3262 -7.7542 -0.3427 38 1 -2.3878 -4.0921 0.4418 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058210929.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:57 Heat of formation + Delta-G solvation = -143.982519 kcal Electronic energy + Delta-G solvation = -28877.856969 eV Core-core repulsion = 24079.292577 eV Total energy + Delta-G solvation = -4798.564392 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.098 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.76820 -48.49889 -48.34750 -41.82312 -39.96351 -38.68555 -36.12872 -35.20497 -32.76508 -32.25246 -30.04174 -29.10885 -27.89319 -26.50089 -25.88531 -24.34860 -22.74177 -22.37801 -20.92777 -20.03435 -19.83979 -19.47344 -19.09708 -17.28061 -17.18545 -16.66566 -16.23071 -15.64700 -15.56469 -15.27368 -15.18669 -15.05570 -14.91811 -14.80019 -14.72212 -14.54142 -14.46988 -14.27652 -13.94994 -13.86218 -13.67712 -13.20476 -12.94816 -12.74374 -12.28613 -12.21720 -11.96207 -11.41334 -11.33860 -11.21477 -10.97481 -10.67903 -10.26693 -9.94590 -9.77661 -9.41285 -8.53103 -8.44579 -8.02837 -7.73000 -6.14126 -4.19827 0.60507 1.13837 1.24491 2.13104 2.45205 2.95023 3.24805 3.32126 3.35760 3.44277 3.45720 3.59170 3.71122 3.82519 4.35155 4.37254 4.58949 4.64173 4.74087 5.02685 5.10589 5.12943 5.20224 5.26203 5.44317 5.56653 5.70589 5.83508 5.87042 6.01601 6.16876 6.41627 6.55534 6.76938 6.90691 7.22884 7.24181 7.34334 7.81026 8.08448 8.11261 8.67555 8.86323 9.45786 10.93979 Molecular weight = 342.10amu Principal moments of inertia in cm(-1) A = 0.028018 B = 0.002118 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.132684 B =13214.788804 C =13297.665697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.594 5.594 3 C 0.245 3.755 4 C -0.532 4.532 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.568 3.432 13 O -0.516 6.516 14 C 0.043 3.957 15 C -0.117 4.117 16 C -0.126 4.126 17 C -0.017 4.017 18 C -0.218 4.218 19 C 0.121 3.879 20 O -0.310 6.310 21 C 0.606 3.394 22 F -0.165 7.165 23 F -0.134 7.134 24 F -0.164 7.164 25 C -0.136 4.136 26 C 0.129 3.871 27 N -0.577 5.577 28 H 0.426 0.574 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.049 0.951 34 H 0.265 0.735 35 H 0.158 0.842 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.210 -21.911 2.851 26.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.326 5.326 3 C 0.126 3.874 4 C -0.570 4.570 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.354 3.646 13 O -0.392 6.392 14 C -0.067 4.067 15 C -0.143 4.143 16 C -0.131 4.131 17 C -0.036 4.036 18 C -0.237 4.237 19 C 0.078 3.922 20 O -0.230 6.230 21 C 0.515 3.485 22 F -0.147 7.147 23 F -0.115 7.115 24 F -0.146 7.146 25 C -0.157 4.157 26 C 0.017 3.983 27 N -0.190 5.190 28 H 0.274 0.726 29 H 0.069 0.931 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.176 0.824 36 H 0.154 0.846 37 H 0.150 0.850 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.684 -21.455 2.982 25.621 hybrid contribution -0.324 0.378 -0.932 1.056 sum -14.008 -21.076 2.050 25.390 Atomic orbital electron populations 1.22080 0.82345 1.04009 0.99995 1.48139 1.05791 1.07999 1.70638 1.19426 0.92705 0.77306 0.97935 1.21397 1.37078 1.06531 0.92037 0.92326 1.24935 0.95142 0.96293 0.97626 1.69921 1.38029 1.14346 1.30839 0.86464 0.77753 0.78652 0.84390 1.20604 1.20972 1.19794 1.17133 0.86983 0.81814 0.78709 1.90844 1.12187 1.86112 1.50028 1.20753 0.82174 0.96466 1.07305 1.20875 0.99450 0.89221 1.04759 1.18269 0.93115 0.93626 1.08138 1.20183 0.97372 0.91706 0.94313 1.20927 0.92315 1.00429 1.10065 1.18029 0.82391 0.90561 1.01238 1.86338 1.33606 1.16093 1.86980 1.19297 0.74530 0.79868 0.74806 1.93307 1.70339 1.85983 1.65036 1.93303 1.38499 1.84289 1.95456 1.93308 1.88218 1.93350 1.39758 1.18809 0.96745 0.90030 1.10111 1.17811 0.94233 0.84443 1.01814 1.43388 1.08440 1.06478 1.60713 0.72565 0.93150 0.89047 0.91894 0.94558 0.93321 0.92552 0.82411 0.84607 0.84982 0.84547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.85 8.86 59.85 0.53 1.38 16 2 N -0.59 -11.95 2.86 -184.42 -0.53 -12.48 16 3 C 0.24 6.11 5.14 -5.19 -0.03 6.09 16 4 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16 5 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 8 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.57 11.62 7.64 -12.75 -0.10 11.53 16 13 O -0.52 -12.64 16.44 5.21 0.09 -12.55 16 14 C 0.04 0.69 6.56 -82.26 -0.54 0.15 16 15 C -0.12 -1.73 10.55 -39.16 -0.41 -2.15 16 16 C -0.13 -1.63 6.16 -106.90 -0.66 -2.29 16 17 C -0.02 -0.18 10.05 -39.55 -0.40 -0.58 16 18 C -0.22 -2.21 8.17 -39.82 -0.33 -2.54 16 19 C 0.12 1.29 6.48 -39.13 -0.25 1.04 16 20 O -0.31 -3.07 10.36 -19.22 -0.20 -3.27 16 21 C 0.61 5.18 3.42 101.05 0.35 5.53 16 22 F -0.16 -1.40 15.54 2.25 0.03 -1.37 16 23 F -0.13 -1.09 17.53 2.25 0.04 -1.05 16 24 F -0.16 -1.41 15.54 2.25 0.03 -1.38 16 25 C -0.14 -1.45 10.00 -39.28 -0.39 -1.84 16 26 C 0.13 1.59 7.25 -83.99 -0.61 0.98 16 27 N -0.58 -7.34 5.09 -7.36 -0.04 -7.38 16 28 H 0.43 4.43 4.91 -40.82 -0.20 4.23 16 29 H 0.05 0.56 7.66 -51.93 -0.40 0.17 16 30 H 0.09 1.31 8.02 -51.93 -0.42 0.89 16 31 H 0.06 0.77 5.22 -51.92 -0.27 0.50 16 32 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.05 1.37 7.41 -51.93 -0.38 0.99 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.16 2.22 8.06 -52.49 -0.42 1.79 16 36 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.13 1.15 5.04 -52.49 -0.26 0.89 16 38 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 339.25 15.07 5.11 5.11 Total: -1.00 -31.84 339.25 -6.16 -38.01 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -3.17 Total: 1.03 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -3.26 Total: 4.05 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.17 Total: -44.90 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.11 Total: -15.82 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.11 Total: -3.79 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.84 -6.16 -38.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058210929.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.977 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds