Wall clock time and date at job start Tue Mar 31 2020 07:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.46658 * 2 1 4 4 C 1.38273 * 119.94584 * 90.00581 * 3 2 1 5 5 C 1.38135 * 120.05786 * 179.97438 * 4 3 2 6 6 C 1.38732 * 119.94374 * 359.97438 * 5 4 3 7 7 O 1.35901 * 120.05720 * 180.02562 * 6 5 4 8 8 C 1.42899 * 117.00179 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47153 * 179.97438 * 8 7 6 10 10 O 1.21293 * 120.00109 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99978 * 179.97438 * 9 8 7 12 12 C 1.39471 * 119.99891 * 179.97438 * 11 9 8 13 13 C 1.36110 * 126.21626 * 0.14378 * 12 11 9 14 14 C 1.39762 * 107.82869 * 180.26709 * 13 12 11 15 15 C 1.50694 * 125.84077 * 179.72419 * 14 13 12 16 16 N 1.30855 * 108.31847 * 359.75600 * 14 13 12 17 17 N 1.35266 * 126.21450 * 180.02562 * 12 11 9 18 18 C 1.46491 * 126.04623 * 359.97438 * 17 12 11 19 19 C 1.50702 * 109.46957 * 269.71277 * 18 17 12 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 17 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48496 * 109.47341 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46983 * 120.00379 * 23 21 19 26 26 H 1.48503 * 109.47491 * 240.00192 * 23 21 19 27 27 C 1.38733 * 119.89200 * 0.27166 * 6 5 4 28 28 C 1.38144 * 119.93738 * 359.47450 * 27 6 5 29 29 H 1.09003 * 109.46930 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47390 * 299.99620 * 1 2 3 31 31 H 1.08999 * 109.47352 * 60.00206 * 1 2 3 32 32 H 1.09002 * 109.47179 * 239.99880 * 2 1 3 33 33 H 1.08999 * 109.47352 * 119.99794 * 2 1 3 34 34 H 1.08000 * 119.96968 * 0.02562 * 4 3 2 35 35 H 1.07997 * 120.03118 * 179.97438 * 5 4 3 36 36 H 1.08994 * 109.47803 * 59.99201 * 8 7 6 37 37 H 1.09002 * 109.46735 * 299.98873 * 8 7 6 38 38 H 0.97004 * 120.00013 * 359.97438 * 11 9 8 39 39 H 1.07999 * 126.09101 * 0.05355 * 13 12 11 40 40 H 1.09003 * 109.47188 * 270.01578 * 15 14 13 41 41 H 1.08998 * 109.47119 * 30.01737 * 15 14 13 42 42 H 1.09003 * 109.47108 * 150.01312 * 15 14 13 43 43 H 1.09004 * 109.47166 * 149.71543 * 18 17 12 44 44 H 1.08994 * 109.47507 * 29.71250 * 18 17 12 45 45 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 46 46 H 1.07995 * 120.03174 * 179.72507 * 27 6 5 47 47 H 1.08005 * 119.97406 * 180.23311 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2623 2.0716 1.1981 5 6 2.7232 3.3738 1.2008 6 6 2.9556 4.0286 0.0001 7 8 3.4095 5.3095 0.0000 8 6 3.6261 5.9211 -1.2732 9 6 4.1245 7.3296 -1.0758 10 8 4.2786 7.7668 0.0451 11 7 4.3990 8.1033 -2.1446 12 6 4.8598 9.4070 -1.9619 13 6 5.0792 10.0224 -0.7678 14 6 5.5301 11.3188 -1.0311 15 6 5.8893 12.3550 0.0024 16 7 5.5862 11.4792 -2.3286 17 7 5.1718 10.2887 -2.9391 18 6 5.0863 10.0435 -4.3808 19 6 6.3990 9.4930 -4.8754 20 1 7.2153 9.3405 -4.1848 21 6 6.5560 9.1780 -6.2086 22 7 5.5620 9.3633 -7.0495 23 14 8.1807 8.4884 -6.8203 24 1 9.1300 8.3759 -5.6839 25 1 7.9567 7.1450 -7.4123 26 1 8.7469 9.3953 -7.8509 27 6 2.7191 3.3753 -1.2008 28 6 2.2633 2.0712 -1.1981 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.0824 1.5610 2.1326 35 1 2.9024 3.8817 2.1369 36 1 2.6895 5.9422 -1.8303 37 1 4.3673 5.3479 -1.8302 38 1 4.2761 7.7535 -3.0410 39 1 4.9283 9.5876 0.2092 40 1 5.0052 12.9421 0.2510 41 1 6.2607 11.8598 0.8996 42 1 6.6620 13.0127 -0.3957 43 1 4.8673 10.9788 -4.8960 44 1 4.2923 9.3241 -4.5806 45 1 5.6726 9.1420 -7.9875 46 1 2.8951 3.8844 -2.1368 47 1 2.0825 1.5608 -2.1326 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058218778.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:02 Heat of formation + Delta-G solvation = 22.129630 kcal Electronic energy + Delta-G solvation = -28467.657821 eV Core-core repulsion = 24424.393610 eV Total energy + Delta-G solvation = -4043.264210 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.01184 -40.43518 -39.20247 -37.82544 -34.82550 -33.86996 -33.80906 -32.12629 -31.36066 -30.07629 -29.12323 -28.63490 -27.39355 -26.07093 -23.93526 -23.32544 -22.87295 -21.67031 -20.95417 -19.83801 -19.39173 -18.47711 -17.21263 -16.82679 -16.56505 -16.31073 -16.06608 -15.79774 -14.99290 -14.89305 -14.70620 -14.49169 -14.18281 -14.00402 -13.92695 -13.66501 -13.48283 -13.03971 -12.86781 -12.80185 -12.64208 -12.53715 -12.31686 -12.05201 -11.81154 -11.61478 -11.48113 -11.30998 -11.14916 -11.08681 -11.02142 -10.94833 -10.46422 -10.38538 -9.97113 -9.83290 -9.55178 -9.25096 -8.77179 -8.31129 -7.96977 -7.50459 -6.38173 -4.46632 1.09119 1.16550 2.12708 2.22699 3.00383 3.11573 3.20978 3.24118 3.29696 3.49028 3.54437 3.79185 4.20442 4.37054 4.49313 4.55301 4.60629 4.77275 4.82225 4.83638 4.95314 5.02703 5.10149 5.17033 5.26583 5.32862 5.40386 5.56207 5.60054 5.62128 5.79066 5.86130 6.01544 6.03727 6.11002 6.11693 6.12749 6.20599 6.35727 6.37539 6.49833 6.62041 6.78404 6.99483 7.12521 7.43680 7.51630 7.57005 7.74734 7.83799 8.18186 8.57210 8.66333 9.21269 10.68946 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009923 B = 0.002460 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.112926 B =11377.088786 C =13640.316056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.124 4.124 4 C -0.079 4.079 5 C -0.145 4.145 6 C 0.128 3.872 7 O -0.288 6.288 8 C 0.048 3.952 9 C 0.521 3.479 10 O -0.491 6.491 11 N -0.636 5.636 12 C 0.301 3.699 13 C -0.293 4.293 14 C 0.051 3.949 15 C -0.062 4.062 16 N -0.283 5.283 17 N -0.343 5.343 18 C 0.256 3.744 19 C -0.540 4.540 20 H 0.066 0.934 21 C 0.066 3.934 22 N -0.890 5.890 23 Si 0.906 3.094 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.279 1.279 27 C -0.207 4.207 28 C -0.077 4.077 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.418 0.582 39 H 0.162 0.838 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.268 0.732 46 H 0.131 0.869 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.106 -15.985 12.348 22.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.124 4.124 4 C -0.097 4.097 5 C -0.164 4.164 6 C 0.082 3.918 7 O -0.200 6.200 8 C -0.031 4.031 9 C 0.306 3.694 10 O -0.363 6.363 11 N -0.284 5.284 12 C 0.079 3.921 13 C -0.325 4.325 14 C -0.114 4.114 15 C -0.121 4.121 16 N -0.108 5.108 17 N -0.129 5.129 18 C 0.138 3.862 19 C -0.578 4.578 20 H 0.084 0.916 21 C -0.137 4.137 22 N -0.527 5.527 23 Si 0.732 3.268 24 H -0.195 1.195 25 H -0.206 1.206 26 H -0.205 1.205 27 C -0.226 4.226 28 C -0.095 4.095 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.254 0.746 39 H 0.179 0.821 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.078 0.922 46 H 0.148 0.852 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.761 -14.839 12.034 21.018 hybrid contribution 0.589 -1.193 -0.903 1.608 sum -8.171 -16.033 11.131 21.159 Atomic orbital electron populations 1.21768 0.94898 1.01573 1.02268 1.20468 0.96032 0.92533 1.02716 1.19816 1.02637 0.96857 0.93071 1.20828 0.97577 0.93453 0.97797 1.20441 1.04428 0.95041 0.96441 1.19053 0.94847 0.83464 0.94418 1.86134 1.80501 1.24362 1.29041 1.22346 1.02938 0.91814 0.86036 1.19854 0.78579 0.86413 0.84576 1.90689 1.49338 1.72879 1.23389 1.42489 1.64566 1.10766 1.10621 1.17831 1.00772 0.83046 0.90460 1.21290 1.18368 0.95368 0.97465 1.22040 1.00976 0.95617 0.92721 1.20025 1.01376 0.95649 0.95073 1.77371 1.22730 1.03609 1.07118 1.49363 1.48930 1.07141 1.07420 1.19641 0.98339 0.98791 0.69449 1.21383 0.98237 1.44004 0.94216 0.91610 1.24943 0.97474 0.95145 0.96168 1.69927 1.31412 1.47174 1.04231 0.86304 0.82886 0.78605 0.78957 1.19531 1.20628 1.20491 1.21306 1.07178 0.96977 0.97091 1.20822 0.97182 0.93699 0.97764 0.92535 0.92560 0.92561 0.91179 0.91170 0.85433 0.84939 0.88385 0.88221 0.74566 0.82107 0.91323 0.91084 0.91458 0.92462 0.93808 0.92189 0.85167 0.85771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.16 0.37 -0.49 16 2 C -0.08 -0.50 6.06 -27.88 -0.17 -0.67 16 3 C -0.12 -1.04 5.13 -104.60 -0.54 -1.58 16 4 C -0.08 -0.68 9.69 -39.61 -0.38 -1.07 16 5 C -0.14 -1.52 9.99 -39.44 -0.39 -1.91 16 6 C 0.13 1.48 6.69 -39.22 -0.26 1.21 16 7 O -0.29 -3.85 9.67 -39.34 -0.38 -4.23 16 8 C 0.05 0.54 5.22 36.01 0.19 0.73 16 9 C 0.52 8.15 7.87 -10.98 -0.09 8.07 16 10 O -0.49 -9.32 13.63 -14.36 -0.20 -9.51 16 11 N -0.64 -10.70 5.41 -11.46 -0.06 -10.76 16 12 C 0.30 6.28 7.66 -153.16 -1.17 5.10 16 13 C -0.29 -6.02 9.58 -39.78 -0.38 -6.40 16 14 C 0.05 1.03 7.21 -82.44 -0.59 0.44 16 15 C -0.06 -0.93 10.44 36.00 0.38 -0.56 16 16 N -0.28 -6.55 12.56 33.65 0.42 -6.13 16 17 N -0.34 -7.94 3.60 -61.58 -0.22 -8.16 16 18 C 0.26 6.25 6.01 -5.20 -0.03 6.22 16 19 C -0.54 -14.25 9.39 -34.44 -0.32 -14.57 16 20 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 21 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -23.88 13.29 55.43 0.74 -23.15 16 23 Si 0.91 20.37 29.54 -169.99 -5.02 15.35 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 C -0.21 -2.03 9.04 -39.43 -0.36 -2.39 16 28 C -0.08 -0.68 9.69 -39.61 -0.38 -1.06 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.10 0.85 7.65 -51.93 -0.40 0.45 16 37 H 0.10 0.92 7.67 -51.93 -0.40 0.52 16 38 H 0.42 6.21 7.96 -40.82 -0.32 5.89 16 39 H 0.16 3.24 5.83 -52.49 -0.31 2.94 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 44 H 0.04 1.02 7.49 -51.93 -0.39 0.63 16 45 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 46 H 0.13 1.05 6.30 -52.49 -0.33 0.72 16 47 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 400.41 15.07 6.03 6.03 Total: -1.00 -32.56 400.41 -9.69 -42.25 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.76 Total: 5.61 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -4.24 Total: -7.29 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.88 Total: -48.20 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.58 Total: -13.75 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.56 -9.69 -42.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058218778.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.375 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds