Wall clock time and date at job start Tue Mar 31 2020 05:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33195 * 119.93732 * 2 1 4 4 C 1.31554 * 121.42823 * 180.02562 * 3 2 1 5 5 C 1.47955 * 119.40902 * 180.02562 * 4 3 2 6 6 C 1.39434 * 119.73518 * 359.97438 * 5 4 3 7 7 C 1.38506 * 119.05531 * 179.97438 * 6 5 4 8 8 C 1.38693 * 118.50495 * 0.02562 * 7 6 5 9 9 C 1.38497 * 119.37141 * 0.02562 * 8 7 6 10 10 N 1.31567 * 120.91347 * 359.73699 * 9 8 7 11 11 N 1.36247 * 121.18429 * 0.02562 * 4 3 2 12 12 H 0.97001 * 120.13175 * 179.97438 * 11 4 3 13 13 C 1.35037 * 119.73496 * 359.75876 * 11 4 3 14 14 O 1.21967 * 120.66917 * 180.23037 * 13 11 4 15 15 C 1.36338 * 119.93204 * 180.02562 * 2 1 3 16 16 C 1.50706 * 120.56919 * 359.96779 * 15 2 1 17 17 C 1.50699 * 109.46817 * 95.00512 * 16 15 2 18 18 O 1.21282 * 120.00041 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00033 * 180.02562 * 17 16 15 20 20 C 1.46499 * 119.99713 * 359.97438 * 19 17 16 21 21 C 1.46500 * 120.00165 * 179.97438 * 19 17 16 22 22 C 1.50700 * 109.47101 * 89.99740 * 21 19 17 23 23 H 1.08002 * 120.00255 * 359.97438 * 22 21 19 24 24 C 1.37874 * 120.00213 * 180.02562 * 22 21 19 25 25 N 1.31522 * 120.00062 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00383 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46927 * 89.99733 * 26 24 22 28 28 H 1.48497 * 109.47092 * 209.99705 * 26 24 22 29 29 H 1.48496 * 109.47089 * 329.99902 * 26 24 22 30 30 H 1.09005 * 109.46661 * 269.97382 * 1 2 3 31 31 H 1.09003 * 109.46949 * 29.97084 * 1 2 3 32 32 H 1.08994 * 109.47278 * 149.97143 * 1 2 3 33 33 H 1.08000 * 120.47023 * 0.02562 * 6 5 4 34 34 H 1.08000 * 120.74890 * 180.02562 * 7 6 5 35 35 H 1.07995 * 120.31397 * 180.02562 * 8 7 6 36 36 H 1.08000 * 119.53886 * 179.97438 * 9 8 7 37 37 H 1.09000 * 109.47318 * 214.99891 * 16 15 2 38 38 H 1.09000 * 109.47161 * 335.00522 * 16 15 2 39 39 H 1.09008 * 109.46586 * 90.00528 * 20 19 17 40 40 H 1.09004 * 109.47061 * 209.99847 * 20 19 17 41 41 H 1.08998 * 109.47333 * 330.00636 * 20 19 17 42 42 H 1.08993 * 109.47349 * 209.99741 * 21 19 17 43 43 H 1.09005 * 109.47039 * 329.99916 * 21 19 17 44 44 H 0.96998 * 120.00320 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1717 1.1542 0.0000 4 6 3.4868 1.1885 -0.0005 5 6 4.1796 2.4958 0.0001 6 6 3.4335 3.6738 0.0006 7 6 4.0965 4.8899 0.0017 8 6 5.4834 4.8876 0.0017 9 6 6.1608 3.6796 0.0001 10 7 5.5068 2.5380 0.0037 11 7 4.2224 0.0416 -0.0016 12 1 5.1914 0.0847 -0.0023 13 6 3.5970 -1.1552 0.0028 14 8 4.2386 -2.1925 0.0062 15 6 2.1873 -1.1815 -0.0005 16 6 1.4452 -2.4932 -0.0004 17 6 1.3051 -2.9912 -1.4158 18 8 1.7632 -2.3449 -2.3342 19 7 0.6708 -4.1548 -1.6612 20 6 0.1180 -4.9357 -0.5518 21 6 0.5340 -4.6386 -3.0372 22 6 1.7190 -5.5018 -3.3862 23 1 2.4964 -5.6727 -2.6562 24 6 1.8112 -6.0728 -4.6378 25 7 0.8648 -5.8644 -5.5270 26 14 3.2796 -7.1434 -5.0702 27 1 2.9825 -8.5557 -4.7205 28 1 3.5551 -7.0413 -6.5259 29 1 4.4685 -6.6843 -4.3081 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3633 -0.8897 -0.5142 33 1 2.3541 3.6384 0.0010 34 1 3.5459 5.8190 0.0026 35 1 6.0300 5.8190 0.0030 36 1 7.2407 3.6747 -0.0004 37 1 1.9993 -3.2241 0.5886 38 1 0.4558 -2.3509 0.4343 39 1 -0.9101 -4.6249 -0.3656 40 1 0.1365 -5.9950 -0.8084 41 1 0.7160 -4.7682 0.3440 42 1 -0.3810 -5.2239 -3.1273 43 1 0.4904 -3.7888 -3.7185 44 1 0.9298 -6.2657 -6.4077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058268472.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:24 Heat of formation + Delta-G solvation = 10.734397 kcal Electronic energy + Delta-G solvation = -29107.272293 eV Core-core repulsion = 25025.399516 eV Total energy + Delta-G solvation = -4081.872777 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.84635 -40.43790 -38.79454 -37.63254 -35.57661 -34.63050 -33.13193 -32.75907 -32.53185 -31.58517 -29.56998 -28.13894 -27.08182 -25.69285 -24.75150 -24.13851 -22.71709 -22.32694 -21.97976 -18.85303 -18.46956 -18.31198 -17.27292 -16.55573 -16.45431 -16.39316 -16.30796 -15.69152 -15.35224 -15.17326 -14.63711 -14.46626 -14.30725 -14.18595 -13.66749 -13.64184 -13.57663 -12.80956 -12.78270 -12.64017 -12.39768 -12.38964 -12.17354 -12.05367 -11.75037 -11.39313 -11.11462 -10.81003 -10.56683 -10.50540 -10.44877 -10.35816 -10.07174 -10.05516 -10.02011 -9.73897 -9.53190 -8.89193 -8.35633 -8.11141 -7.54680 -5.96528 -4.00180 -0.17454 0.73493 1.02340 1.92158 2.55748 3.08935 3.21150 3.36590 3.42594 3.48397 3.55893 3.65938 4.15481 4.18161 4.23631 4.35234 4.50005 4.53538 4.59478 4.63392 4.83245 4.93862 5.12194 5.28646 5.33094 5.40044 5.47107 5.50908 5.58395 5.60985 5.65915 5.68652 5.83309 5.94772 6.02531 6.07365 6.19354 6.30229 6.46337 6.54038 7.13591 7.25760 7.51670 7.63778 7.64536 7.97584 8.01103 8.32754 8.51015 9.00140 9.20525 9.64744 11.11560 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.002684 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.362443 B =10431.547898 C =11281.238894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.175 3.825 3 N -0.514 5.514 4 C 0.437 3.563 5 C 0.145 3.855 6 C -0.103 4.103 7 C -0.080 4.080 8 C -0.151 4.151 9 C 0.106 3.894 10 N -0.472 5.472 11 N -0.615 5.615 12 H 0.424 0.576 13 C 0.532 3.468 14 O -0.522 6.522 15 C -0.208 4.208 16 C -0.081 4.081 17 C 0.511 3.489 18 O -0.537 6.537 19 N -0.604 5.604 20 C 0.082 3.918 21 C 0.246 3.754 22 C -0.523 4.523 23 H 0.057 0.943 24 C 0.060 3.940 25 N -0.897 5.897 26 Si 0.897 3.103 27 H -0.280 1.280 28 H -0.286 1.286 29 H -0.273 1.273 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.158 0.842 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.166 0.834 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.044 0.956 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.032 0.968 43 H 0.043 0.957 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.332 23.311 17.291 29.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.055 3.945 3 N -0.238 5.238 4 C 0.172 3.828 5 C 0.009 3.991 6 C -0.124 4.124 7 C -0.105 4.105 8 C -0.172 4.172 9 C -0.053 4.053 10 N -0.182 5.182 11 N -0.255 5.255 12 H 0.265 0.735 13 C 0.329 3.671 14 O -0.399 6.399 15 C -0.215 4.215 16 C -0.122 4.122 17 C 0.297 3.703 18 O -0.415 6.415 19 N -0.336 5.336 20 C -0.062 4.062 21 C 0.127 3.873 22 C -0.561 4.561 23 H 0.076 0.924 24 C -0.142 4.142 25 N -0.537 5.537 26 Si 0.724 3.276 27 H -0.206 1.206 28 H -0.211 1.211 29 H -0.198 1.198 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.175 0.825 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.183 0.817 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.609 22.626 16.597 28.182 hybrid contribution 1.345 -0.610 -0.405 1.531 sum 3.953 22.016 16.191 27.614 Atomic orbital electron populations 1.20809 0.87657 1.04593 1.03291 1.20807 0.97254 0.86543 0.89857 1.67991 1.03685 1.29270 1.22898 1.20504 0.87441 0.85056 0.89762 1.18863 0.89284 0.90013 1.00981 1.22220 1.02803 0.91164 0.96226 1.21700 0.94503 0.98504 0.95834 1.22421 0.95355 1.00125 0.99249 1.22739 1.00626 0.86738 0.95241 1.67344 1.08045 1.31581 1.11272 1.44770 1.13396 1.06650 1.60722 0.73550 1.16964 0.89163 0.82442 0.78505 1.91006 1.67836 1.30151 1.50876 1.20927 0.92470 0.96863 1.11253 1.20414 1.00654 0.93727 0.97439 1.20096 0.78805 0.81591 0.89794 1.90658 1.47516 1.57089 1.46202 1.48128 1.55267 1.20514 1.09737 1.21657 0.97199 0.97683 0.89651 1.19269 0.96827 0.95197 0.76000 1.21478 1.06693 1.29294 0.98681 0.92430 1.24929 0.96438 0.96752 0.96047 1.69937 1.33304 1.44790 1.05653 0.86510 0.83112 0.80382 0.77572 1.20622 1.21127 1.19819 0.89631 0.89782 0.89760 0.82485 0.83710 0.83970 0.81690 0.87810 0.88089 0.93701 0.90755 0.92397 0.94977 0.93936 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.37 36.01 0.34 -0.82 16 2 C 0.17 2.51 6.77 -82.68 -0.56 1.95 16 3 N -0.51 -6.86 9.31 -7.25 -0.07 -6.93 16 4 C 0.44 5.77 7.65 -154.72 -1.18 4.59 16 5 C 0.15 1.53 6.75 -83.03 -0.56 0.97 16 6 C -0.10 -0.80 9.61 -39.04 -0.38 -1.18 16 7 C -0.08 -0.41 10.17 -39.31 -0.40 -0.81 16 8 C -0.15 -0.71 10.11 -39.32 -0.40 -1.11 16 9 C 0.11 0.69 11.18 -17.57 -0.20 0.50 16 10 N -0.47 -4.66 9.52 -9.82 -0.09 -4.75 16 11 N -0.61 -9.25 5.30 -12.60 -0.07 -9.32 16 12 H 0.42 5.76 8.12 -40.82 -0.33 5.43 16 13 C 0.53 9.94 7.74 -15.10 -0.12 9.82 16 14 O -0.52 -11.65 17.25 4.95 0.09 -11.56 16 15 C -0.21 -3.56 4.41 -104.26 -0.46 -4.02 16 16 C -0.08 -1.37 3.51 -29.03 -0.10 -1.47 16 17 C 0.51 11.52 7.57 -10.99 -0.08 11.43 16 18 O -0.54 -14.64 15.61 5.56 0.09 -14.55 16 19 N -0.60 -13.62 2.86 -182.95 -0.52 -14.14 16 20 C 0.08 1.36 10.24 59.85 0.61 1.98 16 21 C 0.25 6.77 5.16 -5.19 -0.03 6.74 16 22 C -0.52 -15.76 9.39 -34.44 -0.32 -16.08 16 23 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 24 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 25 N -0.90 -27.71 13.29 55.43 0.74 -26.97 16 26 Si 0.90 23.15 29.54 -169.99 -5.02 18.13 16 27 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 H -0.27 -7.16 7.11 56.52 0.40 -6.76 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.00 6.51 -51.93 -0.34 0.66 16 33 H 0.16 1.11 7.51 -52.49 -0.39 0.72 16 34 H 0.15 0.34 8.06 -52.49 -0.42 -0.08 16 35 H 0.14 0.24 8.06 -52.49 -0.42 -0.18 16 36 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.10 1.72 7.07 -51.93 -0.37 1.36 16 38 H 0.10 1.27 6.40 -51.93 -0.33 0.93 16 39 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 40 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 41 H 0.06 0.81 6.44 -51.93 -0.33 0.47 16 42 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 43 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 44 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 379.39 15.07 5.72 5.72 Total: -1.00 -40.62 379.39 -8.48 -49.10 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -5.40 Total: 1.09 kcal Atomic # 6 Polarization: 18.13 SS G_CDS: -3.93 Total: 14.20 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.01 Total: -62.12 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: 0.17 Total: -26.12 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.13 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -40.62 -8.48 -49.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058268472.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.835 kcal (2) G-P(sol) polarization free energy of solvation -40.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds