Wall clock time and date at job start Tue Mar 31 2020 05:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46685 * 77.93450 * 3 2 1 5 5 N 1.46501 * 109.46816 * 179.97438 * 4 3 2 6 6 C 1.46498 * 120.00400 * 74.93433 * 5 4 3 7 7 C 1.50701 * 109.46826 * 89.99882 * 6 5 4 8 8 H 1.07997 * 120.00340 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99500 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00373 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99593 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47147 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47154 * 119.99828 * 11 9 7 14 14 H 1.48501 * 109.47157 * 240.00219 * 11 9 7 15 15 C 1.34777 * 120.00017 * 254.94026 * 5 4 3 16 16 O 1.21555 * 120.00200 * 183.19016 * 15 5 4 17 17 C 1.47863 * 119.99919 * 3.18618 * 15 5 4 18 18 C 1.39609 * 120.11054 * 23.34770 * 17 15 5 19 19 C 1.37977 * 119.99488 * 179.81102 * 18 17 15 20 20 C 1.38262 * 120.22216 * 0.44228 * 19 18 17 21 21 C 1.38935 * 120.22344 * 359.78716 * 20 19 18 22 22 N 1.39972 * 120.00453 * 179.97438 * 21 20 19 23 23 C 1.47060 * 125.40695 * 353.65087 * 22 21 20 24 24 C 1.54102 * 103.86481 * 179.86738 * 23 22 21 25 25 N 1.47058 * 103.86088 * 0.37266 * 24 23 22 26 26 C 1.33943 * 125.41893 * 173.94870 * 22 21 20 27 27 O 1.21594 * 123.04011 * 0.02681 * 26 22 21 28 28 C 1.38636 * 120.00187 * 0.02562 * 21 20 19 29 29 H 1.08994 * 109.46982 * 317.93689 * 3 2 1 30 30 H 1.09001 * 109.46988 * 197.92974 * 3 2 1 31 31 H 1.09000 * 109.46979 * 60.00010 * 4 3 2 32 32 H 1.08995 * 109.47427 * 299.99679 * 4 3 2 33 33 H 1.09004 * 109.46828 * 330.00247 * 6 5 4 34 34 H 1.09000 * 109.47394 * 210.00349 * 6 5 4 35 35 H 0.96997 * 120.00136 * 179.97438 * 10 9 7 36 36 H 1.07999 * 120.00548 * 359.97438 * 18 17 15 37 37 H 1.08004 * 119.89273 * 180.18557 * 19 18 17 38 38 H 1.07996 * 119.88914 * 179.76798 * 20 19 18 39 39 H 1.09000 * 110.54675 * 298.59178 * 23 22 21 40 40 H 1.09008 * 110.54782 * 61.40124 * 23 22 21 41 41 H 1.09004 * 110.75618 * 241.68176 * 24 23 22 42 42 H 1.08992 * 110.46672 * 118.92574 * 24 23 22 43 43 H 0.96994 * 125.41146 * 179.75457 * 25 24 23 44 44 H 1.07998 * 120.11081 * 179.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1181 -0.3007 -1.4107 5 7 4.5831 -0.2994 -1.4109 6 6 5.3167 -1.4278 -0.8322 7 6 5.5686 -2.4628 -1.8982 8 1 5.2178 -2.2965 -2.9060 9 6 6.2471 -3.6220 -1.5868 10 7 6.6748 -3.8243 -0.3598 11 14 6.5600 -4.9047 -2.9084 12 1 5.9833 -4.4400 -4.1956 13 1 8.0227 -5.1063 -3.0660 14 1 5.9231 -6.1870 -2.5143 15 6 5.2561 0.7399 -1.9433 16 8 6.4702 0.7150 -1.9959 17 6 4.5174 1.9105 -2.4634 18 6 3.2313 2.1905 -1.9978 19 6 2.5457 3.2856 -2.4820 20 6 3.1244 4.1035 -3.4348 21 6 4.4018 3.8306 -3.9081 22 7 4.9830 4.6613 -4.8731 23 6 4.3059 5.7700 -5.5624 24 6 5.3888 6.3382 -6.5001 25 7 6.5583 5.4835 -6.2464 26 6 6.2424 4.5693 -5.3198 27 8 7.0279 3.7313 -4.9205 28 6 5.1006 2.7349 -3.4252 29 1 2.9717 -0.7621 0.6884 30 1 2.9710 0.9786 0.3164 31 1 2.7544 0.4621 -2.0992 32 1 2.7553 -1.2785 -1.7271 33 1 4.7281 -1.8699 -0.0284 34 1 6.2689 -1.0765 -0.4345 35 1 7.1517 -4.6400 -0.1407 36 1 2.7742 1.5515 -1.2569 37 1 1.5521 3.5024 -2.1184 38 1 2.5814 4.9571 -3.8128 39 1 3.4554 5.4015 -6.1358 40 1 3.9867 6.5275 -4.8465 41 1 5.6114 7.3754 -6.2495 42 1 5.0734 6.2562 -7.5402 43 1 7.4212 5.5683 -6.6811 44 1 6.0935 2.5209 -3.7921 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058282603.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:42 Heat of formation + Delta-G solvation = 54.688231 kcal Electronic energy + Delta-G solvation = -29371.263468 eV Core-core repulsion = 25291.296672 eV Total energy + Delta-G solvation = -4079.966796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.72146 -40.10482 -37.99639 -36.97437 -36.74653 -35.40401 -34.47039 -32.86360 -31.05570 -31.00224 -30.10568 -28.96463 -27.30705 -24.58215 -24.12538 -23.61019 -23.16074 -21.65424 -20.81818 -19.04342 -18.11445 -17.62937 -17.26495 -17.06724 -16.73488 -16.36929 -15.80945 -15.51155 -15.25924 -14.69048 -14.53936 -14.32072 -14.18869 -14.13641 -13.83995 -13.60228 -13.56215 -13.34873 -12.99913 -12.77794 -12.70812 -12.45762 -12.39553 -12.08609 -11.72223 -11.63661 -11.31446 -11.17491 -10.90830 -10.79884 -10.60382 -10.24499 -10.12625 -9.95355 -9.63773 -9.55777 -9.06426 -8.84811 -8.42059 -7.96041 -7.79100 -6.03566 -4.07288 1.00231 1.36041 2.09928 2.74077 2.81899 2.82724 3.32962 3.35910 3.41331 3.42320 3.45912 3.67048 3.84927 4.01481 4.24656 4.40339 4.45419 4.49325 4.81281 4.85095 4.86952 4.96092 5.02963 5.14253 5.15720 5.22201 5.27676 5.32582 5.45337 5.49528 5.64193 5.86351 5.95595 6.14843 6.27961 6.33470 6.38802 6.49570 6.76719 6.96790 7.04297 7.18634 7.40013 7.47541 7.58341 7.93240 8.22493 8.25063 8.29041 8.89194 9.03691 9.57950 11.04685 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.009823 B = 0.003506 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.898383 B = 7985.442077 C =10246.963034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.216 3.784 3 C -0.059 4.059 4 C 0.084 3.916 5 N -0.588 5.588 6 C 0.244 3.756 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.062 3.938 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.547 3.453 16 O -0.517 6.517 17 C -0.088 4.088 18 C -0.151 4.151 19 C -0.100 4.100 20 C -0.146 4.146 21 C 0.178 3.822 22 N -0.571 5.571 23 C 0.086 3.914 24 C 0.093 3.907 25 N -0.739 5.739 26 C 0.694 3.306 27 O -0.551 6.551 28 C -0.100 4.100 29 H 0.125 0.875 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.037 0.963 34 H 0.048 0.952 35 H 0.263 0.737 36 H 0.156 0.844 37 H 0.130 0.870 38 H 0.124 0.876 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.433 0.567 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.249 22.973 -8.925 26.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.102 4.102 3 C -0.100 4.100 4 C -0.041 4.041 5 N -0.319 5.319 6 C 0.126 3.874 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.210 1.210 15 C 0.333 3.667 16 O -0.393 6.393 17 C -0.093 4.093 18 C -0.169 4.169 19 C -0.118 4.118 20 C -0.167 4.167 21 C 0.085 3.915 22 N -0.298 5.298 23 C -0.037 4.037 24 C -0.032 4.032 25 N -0.402 5.402 26 C 0.395 3.605 27 O -0.426 6.426 28 C -0.121 4.121 29 H 0.143 0.857 30 H 0.132 0.868 31 H 0.125 0.875 32 H 0.107 0.893 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.173 0.827 37 H 0.148 0.852 38 H 0.142 0.858 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.276 0.724 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.782 22.322 -8.579 25.838 hybrid contribution 0.839 -0.582 -0.976 1.412 sum -8.944 21.741 -9.555 25.376 Atomic orbital electron populations 1.81205 1.12881 1.09213 1.08596 1.29049 0.95029 0.92919 0.93182 1.19973 0.81509 1.06312 1.02233 1.22184 0.82775 1.05123 0.94046 1.48057 1.04755 1.20633 1.58469 1.19388 0.92569 0.81760 0.93710 1.21464 1.36478 1.02200 0.96338 0.92229 1.24906 0.95300 0.98218 0.95558 1.69923 1.38422 1.26752 1.18243 0.86463 0.78121 0.81049 0.81937 1.19776 1.20883 1.21026 1.18139 0.87302 0.82219 0.79017 1.90804 1.13271 1.80059 1.55204 1.20126 0.94501 0.96667 0.97956 1.22367 0.94203 0.98069 1.02303 1.20846 0.99950 0.94281 0.96738 1.20745 0.93952 1.01684 1.00354 1.17272 0.92877 0.90894 0.90504 1.44453 1.12103 1.32929 1.40346 1.22555 0.96536 0.89191 0.95404 1.22374 0.85006 0.95683 1.00161 1.45089 1.15784 1.34744 1.44547 1.15926 0.82116 0.82228 0.80266 1.90995 1.51766 1.37992 1.61845 1.21743 1.02407 0.91874 0.96082 0.85693 0.86842 0.87488 0.89271 0.94472 0.93415 0.92766 0.82693 0.85236 0.85788 0.89059 0.89124 0.89523 0.89546 0.72420 0.81361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.39 18.54 42.16 0.78 -5.61 16 2 C 0.22 2.64 15.23 -20.76 -0.32 2.33 16 3 C -0.06 -0.67 4.98 -29.52 -0.15 -0.82 16 4 C 0.08 1.23 4.83 -4.04 -0.02 1.21 16 5 N -0.59 -11.66 2.49 -176.17 -0.44 -12.10 16 6 C 0.24 5.98 5.08 -5.19 -0.03 5.96 16 7 C -0.53 -14.56 9.39 -34.44 -0.32 -14.88 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 11 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 C 0.55 11.58 7.51 -12.32 -0.09 11.49 16 16 O -0.52 -13.51 16.19 5.32 0.09 -13.43 16 17 C -0.09 -1.50 5.60 -104.99 -0.59 -2.09 16 18 C -0.15 -1.92 7.51 -39.17 -0.29 -2.21 16 19 C -0.10 -1.03 10.02 -39.67 -0.40 -1.43 16 20 C -0.15 -1.49 9.48 -39.31 -0.37 -1.86 16 21 C 0.18 2.37 6.61 -83.74 -0.55 1.82 16 22 N -0.57 -6.43 3.16 -118.28 -0.37 -6.81 16 23 C 0.09 0.47 6.48 -3.16 -0.02 0.45 16 24 C 0.09 0.36 8.06 -3.16 -0.03 0.34 16 25 N -0.74 -5.98 6.37 -64.70 -0.41 -6.39 16 26 C 0.69 9.24 8.52 -88.40 -0.75 8.49 16 27 O -0.55 -10.25 14.75 5.28 0.08 -10.17 16 28 C -0.10 -1.73 8.83 -38.98 -0.34 -2.07 16 29 H 0.13 1.43 7.42 -51.93 -0.39 1.04 16 30 H 0.11 1.08 7.03 -51.93 -0.37 0.71 16 31 H 0.11 1.39 4.01 -52.56 -0.21 1.18 16 32 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.04 0.88 7.32 -51.93 -0.38 0.50 16 34 H 0.05 1.33 7.47 -51.93 -0.39 0.94 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.16 1.75 2.20 -52.49 -0.12 1.63 16 37 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.12 0.84 7.27 -52.49 -0.38 0.46 16 39 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 0.32 8.10 -51.92 -0.42 -0.10 16 41 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 42 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.43 2.77 8.96 -40.82 -0.37 2.41 16 44 H 0.17 3.53 5.05 -52.49 -0.27 3.26 16 LS Contribution 370.83 15.07 5.59 5.59 Total: -1.00 -38.70 370.83 -8.28 -46.98 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.94 Total: 1.95 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: -4.37 Total: 8.36 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.29 Total: -56.18 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: 0.16 Total: -23.60 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.70 -8.28 -46.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282603.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.672 kcal (2) G-P(sol) polarization free energy of solvation -38.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds