Wall clock time and date at job start Tue Mar 31 2020 05:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34716 * 116.99436 * 2 1 4 4 O 1.21463 * 120.00510 * 0.02562 * 3 2 1 5 5 C 1.47754 * 119.99692 * 179.97438 * 3 2 1 6 6 C 1.39718 * 119.98390 * 179.97438 * 5 3 2 7 7 C 1.37640 * 120.02456 * 180.02562 * 6 5 3 8 8 C 1.39884 * 119.97791 * 0.02562 * 7 6 5 9 9 C 1.47265 * 120.01881 * 179.97438 * 8 7 6 10 10 C 1.34735 * 119.99835 * 179.97438 * 9 8 7 11 11 C 1.46624 * 119.99757 * 179.97438 * 10 9 8 12 12 O 1.21668 * 120.00295 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99780 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99765 * 180.02562 * 13 11 10 15 15 C 1.50694 * 109.47247 * 90.00125 * 14 13 11 16 16 H 1.07999 * 119.99904 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99977 * 179.97438 * 15 14 13 18 18 N 1.31509 * 119.99776 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99759 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47103 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47026 * 120.00074 * 19 17 15 22 22 H 1.48496 * 109.46775 * 240.00366 * 19 17 15 23 23 C 1.46495 * 120.00431 * 0.02562 * 13 11 10 24 24 C 1.53000 * 109.47308 * 89.99652 * 23 13 11 25 25 C 1.47202 * 109.47005 * 180.02562 * 24 23 13 26 26 N 8.73781 * 145.25043 * 196.83319 * 2 1 3 27 27 C 1.39896 * 119.96281 * 0.24931 * 8 7 6 28 28 C 1.37633 * 119.97660 * 359.47307 * 27 8 7 29 29 H 1.09003 * 109.46686 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47214 * 299.99757 * 1 2 3 31 31 H 1.08995 * 109.47277 * 60.00159 * 1 2 3 32 32 H 1.08001 * 119.98761 * 359.97438 * 6 5 3 33 33 H 1.07998 * 120.01083 * 180.02562 * 7 6 5 34 34 H 1.07999 * 120.00085 * 359.97438 * 9 8 7 35 35 H 1.07995 * 120.00051 * 359.72608 * 10 9 8 36 36 H 1.09004 * 109.46622 * 209.99996 * 14 13 11 37 37 H 1.08997 * 109.47201 * 329.99698 * 14 13 11 38 38 H 0.97008 * 119.99387 * 179.97438 * 18 17 15 39 39 H 1.08996 * 109.47232 * 210.00059 * 23 13 11 40 40 H 1.09006 * 109.46816 * 329.99601 * 23 13 11 41 41 H 1.08996 * 109.47306 * 300.00361 * 24 23 13 42 42 H 1.08994 * 109.47070 * 60.00617 * 24 23 13 43 43 H 1.07995 * 120.00909 * 179.74615 * 27 8 7 44 44 H 1.08002 * 119.99151 * 180.25040 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2191 0.0005 5 6 3.5391 1.2778 0.0006 6 6 4.1730 2.5229 0.0000 7 6 5.5474 2.5960 0.0000 8 6 6.3097 1.4231 0.0000 9 6 7.7804 1.5002 -0.0005 10 6 8.5142 0.3702 0.0000 11 6 9.9784 0.4470 -0.0012 12 8 10.5308 1.5311 -0.0030 13 7 10.7125 -0.6833 -0.0001 14 6 12.1755 -0.6065 -0.0007 15 6 12.6777 -0.5786 1.4199 16 1 11.9771 -0.6149 2.2410 17 6 14.0315 -0.5078 1.6713 18 7 14.8845 -0.4642 0.6713 19 14 14.6539 -0.4740 3.4322 20 1 13.5008 -0.5327 4.3660 21 1 15.5410 -1.6416 3.6662 22 1 15.4147 0.7801 3.6642 23 6 10.0475 -1.9886 0.0016 24 6 9.8155 -2.4447 -1.4403 25 6 9.1467 -3.7560 -1.4385 26 7 8.6315 -4.7671 -1.4423 27 6 5.6743 0.1768 -0.0052 28 6 4.2998 0.1056 0.0005 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 3.5843 3.4283 -0.0012 33 1 6.0372 3.5585 0.0000 34 1 8.2707 2.4625 -0.0014 35 1 8.0239 -0.5920 0.0053 36 1 12.5848 -1.4769 -0.5137 37 1 12.4916 0.3007 -0.5157 38 1 15.8370 -0.4140 0.8482 39 1 10.6757 -2.7157 0.5160 40 1 9.0898 -1.9077 0.5157 41 1 9.1872 -1.7175 -1.9547 42 1 10.7732 -2.5256 -1.9543 43 1 6.2621 -0.7292 -0.0094 44 1 3.8090 -0.8564 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058282975.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:03 Heat of formation + Delta-G solvation = -47.812493 kcal Electronic energy + Delta-G solvation = -27655.616436 eV Core-core repulsion = 23538.912124 eV Total energy + Delta-G solvation = -4116.704312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.90114 -39.59605 -38.99346 -36.93617 -36.79573 -35.36494 -34.25785 -32.89767 -31.56175 -30.89938 -30.40364 -28.23074 -27.39748 -25.14971 -24.08285 -23.27956 -23.01463 -21.65982 -20.34535 -18.45404 -18.30068 -17.79263 -17.44818 -16.97451 -16.71977 -16.50222 -15.83989 -15.50047 -15.06672 -14.94405 -14.74004 -14.41622 -14.18654 -13.99456 -13.90517 -13.69739 -13.56030 -13.15392 -13.00036 -12.65308 -12.56036 -12.49685 -12.34356 -12.28572 -11.82692 -11.79934 -11.33617 -11.24023 -11.20733 -11.00790 -10.91669 -10.89757 -10.66053 -10.50602 -10.23176 -9.73344 -9.39815 -9.20378 -8.57066 -8.50887 -7.89004 -6.12343 -4.17016 -0.03670 1.02608 1.51053 2.29215 2.37917 2.71727 2.78738 3.26064 3.34282 3.37008 3.46089 3.57803 3.81600 4.11374 4.29029 4.38340 4.41821 4.55428 4.58080 4.70731 4.78509 4.88847 4.95492 4.97661 5.07243 5.11446 5.12239 5.20726 5.25827 5.41206 5.45080 5.64088 5.77143 5.80299 5.84824 5.90307 6.01929 6.04084 6.23321 6.41326 6.46579 6.91225 7.30091 7.34960 7.37550 7.54080 7.83747 8.12703 8.18391 8.76877 8.91921 9.48673 10.95738 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.013243 B = 0.002223 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.870677 B =12593.940817 C =13844.088799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.510 3.490 4 O -0.508 6.508 5 C -0.132 4.132 6 C -0.053 4.053 7 C -0.114 4.114 8 C -0.018 4.018 9 C -0.060 4.060 10 C -0.176 4.176 11 C 0.534 3.466 12 O -0.532 6.532 13 N -0.589 5.589 14 C 0.243 3.757 15 C -0.529 4.529 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.893 5.893 19 Si 0.897 3.103 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.116 3.884 24 C -0.052 4.052 25 C 0.217 3.783 26 N -0.444 5.444 27 C -0.124 4.124 28 C -0.059 4.059 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.128 0.872 36 H 0.036 0.964 37 H 0.048 0.952 38 H 0.263 0.737 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.118 0.882 43 H 0.137 0.863 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.378 0.322 -3.755 23.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.355 3.645 4 O -0.397 6.397 5 C -0.133 4.133 6 C -0.071 4.071 7 C -0.132 4.132 8 C -0.018 4.018 9 C -0.079 4.079 10 C -0.197 4.197 11 C 0.323 3.677 12 O -0.410 6.410 13 N -0.320 5.320 14 C 0.125 3.875 15 C -0.567 4.567 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.725 3.275 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.010 4.010 24 C -0.093 4.093 25 C -0.101 4.101 26 N -0.122 5.122 27 C -0.142 4.142 28 C -0.077 4.077 29 H 0.122 0.878 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.146 0.854 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.126 0.874 42 H 0.136 0.864 43 H 0.155 0.845 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -23.845 -0.336 -3.801 24.148 hybrid contribution 0.425 0.299 0.971 1.101 sum -23.420 -0.037 -2.831 23.590 Atomic orbital electron populations 1.23302 0.75800 1.03904 1.02694 1.86551 1.23701 1.32618 1.84280 1.21278 0.89217 0.81439 0.72571 1.90832 1.66839 1.36044 1.45968 1.19149 0.88798 0.95164 1.10208 1.21182 0.94524 0.96687 0.94738 1.21346 0.92939 0.98519 1.00392 1.19407 0.93315 0.93323 0.95782 1.22342 0.90518 1.00078 0.94996 1.23491 0.94719 0.99164 1.02291 1.18172 0.86724 0.84686 0.78144 1.90805 1.73161 1.27519 1.49520 1.48131 1.09607 1.03468 1.70750 1.19394 0.71495 0.98836 0.97798 1.21442 0.91877 1.51186 0.92228 0.92265 1.24923 0.96721 0.94962 0.97426 1.69928 1.02476 1.50102 1.30658 0.86454 0.78830 0.77654 0.84567 1.19775 1.20972 1.20870 1.21355 0.99110 0.87414 0.93152 1.19928 1.01521 0.86384 1.01512 1.29052 0.93252 0.94692 0.93152 1.81162 1.10346 1.12065 1.08583 1.21435 0.94255 0.97689 1.00808 1.21375 0.93688 0.97960 0.94707 0.87847 0.91744 0.91756 0.84284 0.84213 0.84117 0.85405 0.94574 0.93409 0.92690 0.88616 0.90517 0.87416 0.86421 0.84521 0.84234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.17 9.80 -40.54 -0.40 -3.56 16 3 C 0.51 5.36 7.90 34.62 0.27 5.63 16 4 O -0.51 -6.43 16.12 -19.24 -0.31 -6.74 16 5 C -0.13 -1.28 5.88 -104.90 -0.62 -1.90 16 6 C -0.05 -0.49 9.57 -39.25 -0.38 -0.86 16 7 C -0.11 -1.01 9.77 -39.18 -0.38 -1.39 16 8 C -0.02 -0.18 5.87 -104.99 -0.62 -0.79 16 9 C -0.06 -0.68 9.45 -37.16 -0.35 -1.04 16 10 C -0.18 -2.18 8.61 -37.44 -0.32 -2.50 16 11 C 0.53 9.46 7.61 -12.88 -0.10 9.37 16 12 O -0.53 -11.90 15.81 5.22 0.08 -11.81 16 13 N -0.59 -10.36 2.46 -176.63 -0.43 -10.79 16 14 C 0.24 5.60 5.16 -5.19 -0.03 5.58 16 15 C -0.53 -13.83 9.39 -34.44 -0.32 -14.15 16 16 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -25.08 13.29 55.43 0.74 -24.35 16 19 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 C 0.12 1.45 5.08 -4.04 -0.02 1.43 16 24 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 25 C 0.22 2.45 15.43 -20.80 -0.32 2.12 16 26 N -0.44 -6.19 18.53 42.11 0.78 -5.41 16 27 C -0.12 -1.07 9.39 -39.18 -0.37 -1.44 16 28 C -0.06 -0.50 9.60 -39.24 -0.38 -0.88 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.14 1.17 7.63 -52.49 -0.40 0.77 16 33 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.14 1.73 7.52 -52.49 -0.39 1.34 16 35 H 0.13 1.17 4.21 -52.49 -0.22 0.95 16 36 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 37 H 0.05 1.26 7.42 -51.93 -0.39 0.88 16 38 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.10 1.29 8.07 -51.93 -0.42 0.87 16 40 H 0.08 0.77 6.09 -51.93 -0.32 0.46 16 41 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.12 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.14 0.96 6.15 -52.49 -0.32 0.64 16 44 H 0.14 0.97 7.59 -52.49 -0.40 0.57 16 LS Contribution 395.26 15.07 5.96 5.96 Total: -1.00 -34.34 395.26 -7.10 -41.44 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -5.36 Total: -2.00 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -3.13 Total: 1.35 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 1.08 Total: -40.55 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.62 Total: -22.12 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.34 -7.10 -41.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282975.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.369 kcal (2) G-P(sol) polarization free energy of solvation -34.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds