Wall clock time and date at job start Tue Mar 31 2020 05:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34716 * 116.99436 * 2 1 4 4 O 1.21463 * 120.00510 * 0.02562 * 3 2 1 5 5 C 1.47754 * 119.99692 * 179.97438 * 3 2 1 6 6 C 1.39718 * 119.98390 * 179.97438 * 5 3 2 7 7 C 1.37640 * 120.02456 * 180.02562 * 6 5 3 8 8 C 1.39884 * 119.97791 * 0.02562 * 7 6 5 9 9 C 1.47265 * 120.01881 * 179.97438 * 8 7 6 10 10 C 1.34735 * 119.99835 * 179.97438 * 9 8 7 11 11 C 1.46624 * 119.99757 * 179.97438 * 10 9 8 12 12 O 1.21668 * 120.00295 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99780 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99765 * 180.02562 * 13 11 10 15 15 C 1.50694 * 109.47247 * 90.00125 * 14 13 11 16 16 H 1.07999 * 119.99904 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99977 * 179.97438 * 15 14 13 18 18 N 1.31509 * 119.99776 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99759 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47103 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47026 * 120.00074 * 19 17 15 22 22 H 1.48496 * 109.46775 * 240.00366 * 19 17 15 23 23 C 1.46495 * 120.00431 * 0.02562 * 13 11 10 24 24 C 1.53000 * 109.47308 * 89.99652 * 23 13 11 25 25 C 1.47202 * 109.47005 * 180.02562 * 24 23 13 26 26 N 8.73781 * 145.25043 * 196.83319 * 2 1 3 27 27 C 1.39896 * 119.96281 * 0.24931 * 8 7 6 28 28 C 1.37633 * 119.97660 * 359.47307 * 27 8 7 29 29 H 1.09003 * 109.46686 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47214 * 299.99757 * 1 2 3 31 31 H 1.08995 * 109.47277 * 60.00159 * 1 2 3 32 32 H 1.08001 * 119.98761 * 359.97438 * 6 5 3 33 33 H 1.07998 * 120.01083 * 180.02562 * 7 6 5 34 34 H 1.07999 * 120.00085 * 359.97438 * 9 8 7 35 35 H 1.07995 * 120.00051 * 359.72608 * 10 9 8 36 36 H 1.09004 * 109.46622 * 209.99996 * 14 13 11 37 37 H 1.08997 * 109.47201 * 329.99698 * 14 13 11 38 38 H 0.97008 * 119.99387 * 179.97438 * 18 17 15 39 39 H 1.08996 * 109.47232 * 210.00059 * 23 13 11 40 40 H 1.09006 * 109.46816 * 329.99601 * 23 13 11 41 41 H 1.08996 * 109.47306 * 300.00361 * 24 23 13 42 42 H 1.08994 * 109.47070 * 60.00617 * 24 23 13 43 43 H 1.07995 * 120.00909 * 179.74615 * 27 8 7 44 44 H 1.08002 * 119.99151 * 180.25040 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2191 0.0005 5 6 3.5391 1.2778 0.0006 6 6 4.1730 2.5229 0.0000 7 6 5.5474 2.5960 0.0000 8 6 6.3097 1.4231 0.0000 9 6 7.7804 1.5002 -0.0005 10 6 8.5142 0.3702 0.0000 11 6 9.9784 0.4470 -0.0012 12 8 10.5308 1.5311 -0.0030 13 7 10.7125 -0.6833 -0.0001 14 6 12.1755 -0.6065 -0.0007 15 6 12.6777 -0.5786 1.4199 16 1 11.9771 -0.6149 2.2410 17 6 14.0315 -0.5078 1.6713 18 7 14.8845 -0.4642 0.6713 19 14 14.6539 -0.4740 3.4322 20 1 13.5008 -0.5327 4.3660 21 1 15.5410 -1.6416 3.6662 22 1 15.4147 0.7801 3.6642 23 6 10.0475 -1.9886 0.0016 24 6 9.8155 -2.4447 -1.4403 25 6 9.1467 -3.7560 -1.4385 26 7 8.6315 -4.7671 -1.4423 27 6 5.6743 0.1768 -0.0052 28 6 4.2998 0.1056 0.0005 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 3.5843 3.4283 -0.0012 33 1 6.0372 3.5585 0.0000 34 1 8.2707 2.4625 -0.0014 35 1 8.0239 -0.5920 0.0053 36 1 12.5848 -1.4769 -0.5137 37 1 12.4916 0.3007 -0.5157 38 1 15.8370 -0.4140 0.8482 39 1 10.6757 -2.7157 0.5160 40 1 9.0898 -1.9077 0.5157 41 1 9.1872 -1.7175 -1.9547 42 1 10.7732 -2.5256 -1.9543 43 1 6.2621 -0.7292 -0.0094 44 1 3.8090 -0.8564 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058282975.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:02 Heat of formation + Delta-G solvation = -66.807981 kcal Electronic energy + Delta-G solvation = -27656.440142 eV Core-core repulsion = 23538.912124 eV Total energy + Delta-G solvation = -4117.528018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.64332 -40.80817 -39.86168 -37.98243 -37.55238 -36.70196 -35.25254 -34.73035 -32.26977 -32.12732 -31.28486 -29.35516 -28.52053 -26.22501 -25.29295 -24.62032 -23.72136 -22.61330 -21.32576 -19.46689 -19.14944 -18.85539 -18.45840 -18.25050 -17.95569 -17.41847 -17.14162 -16.36144 -16.34385 -15.80301 -15.72011 -15.69208 -15.48750 -14.87712 -14.57552 -14.53618 -14.36502 -14.33138 -14.23810 -13.76652 -13.66469 -13.52572 -13.38262 -13.08164 -13.04797 -12.94457 -12.78111 -12.61704 -12.50268 -12.16109 -11.96415 -11.84509 -11.83814 -11.69609 -11.63552 -11.37685 -10.65297 -10.57542 -10.05435 -9.57426 -9.28450 -8.16384 -6.28409 -0.83920 0.36718 0.59960 1.40591 1.43417 1.53507 1.55388 1.65053 1.78181 1.89551 2.27421 2.45710 2.49803 2.86359 3.12916 3.17530 3.52860 3.64545 3.78586 3.91369 4.02401 4.16612 4.17139 4.23999 4.29314 4.30962 4.33051 4.35089 4.60395 4.69798 4.75146 4.87528 4.96002 5.04637 5.06162 5.11704 5.14069 5.23836 5.29643 5.35225 5.47685 5.59246 5.63727 5.76980 5.90368 6.14630 6.60647 6.64994 6.76541 6.83516 7.35343 7.51712 8.90230 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.013243 B = 0.002223 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.870677 B =12593.940817 C =13844.088799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.509 3.491 4 O -0.537 6.537 5 C -0.140 4.140 6 C -0.061 4.061 7 C -0.111 4.111 8 C -0.030 4.030 9 C -0.036 4.036 10 C -0.184 4.184 11 C 0.529 3.471 12 O -0.593 6.593 13 N -0.591 5.591 14 C 0.258 3.742 15 C -0.538 4.538 16 H 0.054 0.946 17 C 0.010 3.990 18 N -0.925 5.925 19 Si 0.958 3.042 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.285 1.285 23 C 0.111 3.889 24 C -0.039 4.039 25 C 0.246 3.754 26 N -0.487 5.487 27 C -0.116 4.116 28 C -0.056 4.056 29 H 0.134 0.866 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.141 0.859 33 H 0.153 0.847 34 H 0.126 0.874 35 H 0.168 0.832 36 H 0.037 0.963 37 H 0.005 0.995 38 H 0.265 0.735 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.138 0.862 42 H 0.119 0.881 43 H 0.160 0.840 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.476 -1.014 -3.281 25.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.356 3.644 4 O -0.428 6.428 5 C -0.141 4.141 6 C -0.079 4.079 7 C -0.129 4.129 8 C -0.031 4.031 9 C -0.056 4.056 10 C -0.204 4.204 11 C 0.321 3.679 12 O -0.476 6.476 13 N -0.320 5.320 14 C 0.137 3.863 15 C -0.576 4.576 16 H 0.072 0.928 17 C -0.189 4.189 18 N -0.565 5.565 19 Si 0.783 3.217 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.212 1.212 23 C -0.013 4.013 24 C -0.081 4.081 25 C -0.071 4.071 26 N -0.165 5.165 27 C -0.134 4.134 28 C -0.074 4.074 29 H 0.152 0.848 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.159 0.841 33 H 0.170 0.830 34 H 0.144 0.856 35 H 0.185 0.815 36 H 0.054 0.946 37 H 0.023 0.977 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.128 0.872 41 H 0.155 0.845 42 H 0.137 0.863 43 H 0.178 0.822 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -25.982 -1.729 -3.329 26.251 hybrid contribution 0.947 0.768 0.802 1.460 sum -25.035 -0.961 -2.527 25.181 Atomic orbital electron populations 1.23598 0.74229 1.05940 1.02661 1.86541 1.25277 1.31658 1.83743 1.21476 0.89582 0.81491 0.71828 1.90817 1.67511 1.37019 1.47500 1.19321 0.88624 0.95896 1.10260 1.21264 0.94674 0.96904 0.95042 1.21510 0.92838 0.99099 0.99422 1.19329 0.92041 0.94282 0.97414 1.22361 0.91550 0.99322 0.92405 1.23235 0.90976 1.01221 1.04958 1.18983 0.88883 0.83555 0.76528 1.90773 1.74758 1.29664 1.52368 1.47984 1.07631 1.05736 1.70639 1.18841 0.75137 0.96628 0.95722 1.21775 0.92014 1.50329 0.93525 0.92780 1.25729 0.97190 0.94890 1.01131 1.70030 1.02719 1.51275 1.32522 0.85512 0.78345 0.77634 0.80190 1.19191 1.19930 1.21163 1.21597 0.99891 0.84575 0.95287 1.19850 1.02174 0.86174 0.99853 1.29045 0.92039 0.94219 0.91812 1.81209 1.12035 1.13310 1.09924 1.21677 0.94424 0.97933 0.99346 1.21564 0.93633 0.98266 0.93950 0.84799 0.91850 0.91805 0.84081 0.82961 0.85591 0.81533 0.94551 0.97674 0.92606 0.89679 0.87155 0.84473 0.86320 0.82230 0.82387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.62 9.80 -56.26 -0.55 -6.17 16 3 C 0.51 10.00 7.90 70.34 0.56 10.56 16 4 O -0.54 -13.26 16.12 19.95 0.32 -12.94 16 5 C -0.14 -2.43 5.88 -20.04 -0.12 -2.55 16 6 C -0.06 -1.02 9.57 22.49 0.22 -0.81 16 7 C -0.11 -1.76 9.77 22.53 0.22 -1.54 16 8 C -0.03 -0.51 5.87 -20.10 -0.12 -0.63 16 9 C -0.04 -0.77 9.45 23.84 0.23 -0.54 16 10 C -0.18 -4.10 8.61 23.66 0.20 -3.90 16 11 C 0.53 18.56 7.61 86.43 0.66 19.21 16 12 O -0.59 -27.45 15.81 -4.25 -0.07 -27.52 16 13 N -0.59 -20.48 2.46 -830.97 -2.04 -22.53 16 14 C 0.26 12.19 5.16 85.63 0.44 12.63 16 15 C -0.54 -28.58 9.39 25.60 0.24 -28.34 16 16 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 17 C 0.01 0.53 5.46 84.66 0.46 0.99 16 18 N -0.93 -53.08 13.29 21.45 0.28 -52.80 16 19 Si 0.96 43.18 29.54 68.60 2.03 45.21 16 20 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 23 C 0.11 2.51 5.08 86.38 0.44 2.95 16 24 C -0.04 -0.65 6.03 28.79 0.17 -0.48 16 25 C 0.25 4.87 15.43 89.46 1.38 6.25 16 26 N -0.49 -12.52 18.53 19.99 0.37 -12.15 16 27 C -0.12 -1.57 9.39 22.53 0.21 -1.36 16 28 C -0.06 -0.77 9.60 22.49 0.22 -0.56 16 29 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 32 H 0.14 2.27 7.63 -2.91 -0.02 2.25 16 33 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.13 3.06 7.52 -2.91 -0.02 3.04 16 35 H 0.17 2.28 4.21 -2.91 -0.01 2.26 16 36 H 0.04 1.70 8.07 -2.38 -0.02 1.68 16 37 H 0.01 0.29 7.42 -2.39 -0.02 0.27 16 38 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 39 H 0.08 2.15 8.07 -2.39 -0.02 2.13 16 40 H 0.11 1.78 6.09 -2.38 -0.01 1.76 16 41 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.16 1.38 6.15 -2.91 -0.02 1.36 16 44 H 0.16 1.58 7.59 -2.91 -0.02 1.56 16 Total: -1.00 -77.81 395.26 7.99 -69.82 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: 1.04 Total: 5.68 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 6.60 Total: 13.39 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -1.39 Total: -87.47 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -0.30 Total: -46.64 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -77.81 7.99 -69.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282975.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.016 kcal (2) G-P(sol) polarization free energy of solvation -77.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds