Wall clock time and date at job start Tue Mar 31 2020 07:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47207 * 341.67746 * 3 2 1 5 5 N 1.46494 * 109.46860 * 179.97438 * 4 3 2 6 6 C 1.46503 * 119.99952 * 264.43167 * 5 4 3 7 7 C 1.50699 * 109.47168 * 264.96883 * 6 5 4 8 8 H 1.07998 * 119.99966 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00037 * 180.02562 * 7 6 5 10 10 N 1.31509 * 119.99628 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99851 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47039 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46806 * 120.00097 * 11 9 7 14 14 H 1.48496 * 109.46922 * 239.99834 * 11 9 7 15 15 C 1.34771 * 120.00163 * 84.43652 * 5 4 3 16 16 O 1.21288 * 120.00021 * 6.06086 * 15 5 4 17 17 C 1.50701 * 120.00278 * 186.06470 * 15 5 4 18 18 C 1.53119 * 109.52725 * 192.14291 * 17 15 5 19 19 C 1.53036 * 109.28422 * 182.43668 * 18 17 15 20 20 N 1.46850 * 109.51928 * 59.18039 * 19 18 17 21 21 C 1.38400 * 111.00147 * 174.16179 * 20 19 18 22 22 N 1.32497 * 119.21770 * 359.73094 * 21 20 19 23 23 C 1.32273 * 120.74569 * 180.27689 * 22 21 20 24 24 C 1.38601 * 119.19278 * 359.97438 * 23 22 21 25 25 C 1.38605 * 118.56192 * 0.02562 * 24 23 22 26 26 N 1.32276 * 119.19636 * 359.97438 * 25 24 23 27 27 C 1.46849 * 111.19789 * 298.26034 * 20 19 18 28 28 C 1.53037 * 109.52659 * 61.74252 * 27 20 19 29 29 H 1.08994 * 109.47235 * 221.67308 * 3 2 1 30 30 H 1.09007 * 109.47052 * 101.67646 * 3 2 1 31 31 H 1.08995 * 109.47016 * 60.00051 * 4 3 2 32 32 H 1.08998 * 109.46855 * 299.99853 * 4 3 2 33 33 H 1.08993 * 109.47074 * 24.96886 * 6 5 4 34 34 H 1.08998 * 109.47105 * 144.96831 * 6 5 4 35 35 H 0.97003 * 119.99535 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.57513 * 312.30029 * 17 15 5 37 37 H 1.09001 * 109.50298 * 62.49423 * 18 17 15 38 38 H 1.09006 * 109.50456 * 302.38529 * 18 17 15 39 39 H 1.08992 * 109.46045 * 299.16873 * 19 18 17 40 40 H 1.08990 * 109.46385 * 179.19127 * 19 18 17 41 41 H 1.07994 * 120.40295 * 180.02562 * 23 22 21 42 42 H 1.08002 * 120.71959 * 179.97438 * 24 23 22 43 43 H 1.08005 * 120.40183 * 179.97438 * 25 24 23 44 44 H 1.09003 * 109.46381 * 181.76024 * 27 20 19 45 45 H 1.09006 * 109.46569 * 301.72495 * 27 20 19 46 46 H 1.08998 * 109.50203 * 180.87994 * 28 27 20 47 47 H 1.08994 * 109.50160 * 60.75753 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.3685 0.4535 5 7 4.5836 -1.3680 0.4529 6 6 5.3158 -1.8817 -0.7074 7 6 5.6755 -3.3266 -0.4750 8 1 5.3879 -3.8133 0.4452 9 6 6.3727 -4.0268 -1.4366 10 7 6.7242 -3.4335 -2.5564 11 14 6.8192 -5.8176 -1.1481 12 1 6.3127 -6.2461 0.1804 13 1 6.2038 -6.6578 -2.2066 14 1 8.2955 -5.9724 -1.1891 15 6 5.2577 -0.8950 1.5197 16 8 4.6567 -0.5723 2.5226 17 6 6.7583 -0.7669 1.4666 18 6 7.2996 -0.5033 2.8744 19 6 8.8167 -0.3138 2.8053 20 7 9.1302 0.8163 1.9215 21 6 10.4851 1.0981 1.9383 22 7 11.2876 0.3704 2.7012 23 6 12.5864 0.6170 2.7445 24 6 13.1043 1.6499 1.9791 25 6 12.2367 2.3912 1.1924 26 7 10.9482 2.0922 1.1950 27 6 8.6618 0.5655 0.5525 28 6 7.1402 0.4022 0.5544 29 1 2.9710 0.7684 0.6832 30 1 2.9712 0.2088 -1.0065 31 1 2.7556 -2.1362 -0.2298 32 1 2.7554 -1.5766 1.4599 33 1 4.6903 -1.8015 -1.5964 34 1 6.2259 -1.2991 -0.8498 35 1 7.2145 -3.9262 -3.2331 36 1 7.1900 -1.6888 1.0771 37 1 7.0679 -1.3518 3.5182 38 1 6.8383 0.3977 3.2790 39 1 9.2784 -1.2201 2.4137 40 1 9.2033 -0.1117 3.8041 41 1 13.2355 0.0201 3.3680 42 1 14.1609 1.8730 1.9960 43 1 12.6083 3.2030 0.5846 44 1 8.9360 1.4062 -0.0849 45 1 9.1243 -0.3450 0.1714 46 1 6.7946 0.2006 -0.4595 47 1 6.6764 1.3173 0.9224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058283091.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:24 Heat of formation + Delta-G solvation = 54.384542 kcal Electronic energy + Delta-G solvation = -30076.706767 eV Core-core repulsion = 26067.133986 eV Total energy + Delta-G solvation = -4009.572781 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.32023 -39.83664 -38.13527 -36.65063 -35.24007 -33.97659 -33.84135 -32.87391 -31.31996 -30.71227 -30.33363 -27.23795 -25.96048 -24.92624 -23.81905 -23.24031 -22.64008 -22.32806 -19.91174 -18.42155 -17.89045 -17.48548 -17.46893 -16.72468 -16.30914 -15.95260 -15.54268 -15.37953 -14.78396 -14.70809 -14.55885 -14.47874 -14.29944 -13.73619 -13.59493 -13.50520 -13.37560 -12.96505 -12.74133 -12.37685 -12.32249 -12.16679 -12.05729 -11.69227 -11.46455 -11.33329 -11.15629 -11.04681 -10.96496 -10.93573 -10.79532 -10.63525 -10.44859 -10.27074 -10.22740 -10.07692 -9.81418 -9.25206 -9.05173 -8.63664 -8.39954 -7.90383 -6.28031 -4.34872 0.85137 1.00949 2.84040 2.94247 3.12999 3.16009 3.25061 3.26637 3.32947 3.66439 3.69574 4.05070 4.25999 4.35896 4.46574 4.62506 4.90837 4.97867 5.00105 5.05292 5.07536 5.15148 5.27110 5.34416 5.35927 5.50845 5.58145 5.62441 5.65757 5.77884 5.88571 5.92250 6.00251 6.04773 6.10058 6.13666 6.24275 6.30097 6.41199 6.58931 6.67818 6.72067 6.76799 7.10745 7.21767 7.39988 7.67732 7.70262 7.95898 8.07741 8.17381 8.69950 8.89649 9.33748 10.78484 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.008988 B = 0.003489 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3114.556676 B = 8022.624805 C =10047.601627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.221 3.779 3 C -0.046 4.046 4 C 0.126 3.874 5 N -0.597 5.597 6 C 0.230 3.770 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.068 3.932 10 N -0.889 5.889 11 Si 0.892 3.108 12 H -0.271 1.271 13 H -0.282 1.282 14 H -0.283 1.283 15 C 0.528 3.472 16 O -0.568 6.568 17 C -0.110 4.110 18 C -0.098 4.098 19 C 0.072 3.928 20 N -0.458 5.458 21 C 0.499 3.501 22 N -0.552 5.552 23 C 0.173 3.827 24 C -0.271 4.271 25 C 0.174 3.826 26 N -0.532 5.532 27 C 0.071 3.929 28 C -0.107 4.107 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.048 0.952 35 H 0.265 0.735 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.087 0.913 41 H 0.166 0.834 42 H 0.144 0.856 43 H 0.168 0.832 44 H 0.094 0.906 45 H 0.052 0.948 46 H 0.093 0.907 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.935 9.440 5.354 16.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.097 4.097 3 C -0.087 4.087 4 C 0.000 4.000 5 N -0.327 5.327 6 C 0.111 3.889 7 C -0.579 4.579 8 H 0.080 0.920 9 C -0.136 4.136 10 N -0.527 5.527 11 Si 0.720 3.280 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.209 1.209 15 C 0.317 3.683 16 O -0.448 6.448 17 C -0.131 4.131 18 C -0.136 4.136 19 C -0.055 4.055 20 N -0.177 5.177 21 C 0.144 3.856 22 N -0.272 5.272 23 C 0.006 3.994 24 C -0.295 4.295 25 C 0.006 3.994 26 N -0.250 5.250 27 C -0.054 4.054 28 C -0.145 4.145 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.130 0.870 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.183 0.817 42 H 0.161 0.839 43 H 0.185 0.815 44 H 0.113 0.887 45 H 0.071 0.929 46 H 0.111 0.889 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.671 9.733 5.815 14.273 hybrid contribution 2.190 -1.467 -0.287 2.652 sum 10.861 8.266 5.529 14.726 Atomic orbital electron populations 1.81174 1.13100 1.08945 1.09606 1.29119 0.95141 0.92865 0.92541 1.19799 0.81318 1.02127 1.05470 1.21099 0.81945 0.94054 1.02899 1.48200 1.04970 1.60393 1.19127 1.19663 0.92473 0.94429 0.82357 1.21540 1.36538 0.96100 1.03708 0.91972 1.24903 0.95378 0.98451 0.94835 1.69910 1.38698 1.36907 1.07195 0.86519 0.78252 0.84724 0.78517 1.19587 1.20829 1.20855 1.20393 0.89604 0.76039 0.82251 1.90608 1.70628 1.51858 1.31706 1.21374 0.93029 1.01541 0.97148 1.21481 0.92856 1.03278 0.96001 1.22097 0.96437 0.90199 0.96783 1.58423 1.06974 1.40115 1.12217 1.21177 0.90038 0.87078 0.87345 1.68433 1.05461 1.28765 1.24553 1.23054 0.90766 0.92707 0.92888 1.22679 1.02731 1.01271 1.02848 1.23081 0.87693 0.95864 0.92789 1.68046 1.16239 1.17084 1.23664 1.22207 0.96208 1.01792 0.85189 1.21673 0.93863 0.97914 1.01008 0.87313 0.87075 0.89383 0.90240 0.94350 0.93394 0.92524 0.86955 0.90480 0.90349 0.92631 0.89491 0.81727 0.83853 0.81524 0.88743 0.92925 0.88857 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.46 18.54 42.15 0.78 -6.68 16 2 C 0.22 3.14 15.43 -20.76 -0.32 2.82 16 3 C -0.05 -0.57 5.99 -29.51 -0.18 -0.75 16 4 C 0.13 1.94 5.34 -4.04 -0.02 1.92 16 5 N -0.60 -10.56 2.48 -175.07 -0.43 -10.99 16 6 C 0.23 4.67 4.73 -5.19 -0.02 4.64 16 7 C -0.54 -12.76 8.78 -34.44 -0.30 -13.06 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 10 N -0.89 -22.68 13.29 55.43 0.74 -21.94 16 11 Si 0.89 19.56 29.54 -169.99 -5.02 14.54 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 13 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 14 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 15 C 0.53 9.49 6.82 -10.99 -0.07 9.41 16 16 O -0.57 -11.24 15.58 5.55 0.09 -11.15 16 17 C -0.11 -1.77 1.75 -91.65 -0.16 -1.93 16 18 C -0.10 -1.45 4.80 -26.65 -0.13 -1.58 16 19 C 0.07 1.00 4.63 -3.83 -0.02 0.98 16 20 N -0.46 -6.60 4.72 -175.43 -0.83 -7.43 16 21 C 0.50 7.08 7.17 -322.81 -2.32 4.76 16 22 N -0.55 -7.23 8.67 -13.93 -0.12 -7.35 16 23 C 0.17 1.66 11.30 -17.23 -0.19 1.47 16 24 C -0.27 -2.17 10.16 -39.31 -0.40 -2.57 16 25 C 0.17 1.65 11.30 -17.23 -0.19 1.45 16 26 N -0.53 -7.00 9.65 -13.93 -0.13 -7.14 16 27 C 0.07 1.01 5.33 -3.83 -0.02 0.99 16 28 C -0.11 -1.53 5.09 -26.65 -0.14 -1.67 16 29 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.11 1.22 8.14 -51.92 -0.42 0.80 16 31 H 0.09 1.36 8.03 -51.93 -0.42 0.94 16 32 H 0.08 1.28 7.52 -51.93 -0.39 0.89 16 33 H 0.04 0.81 8.03 -51.93 -0.42 0.40 16 34 H 0.05 0.98 4.56 -51.93 -0.24 0.74 16 35 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 36 H 0.11 2.04 7.00 -51.93 -0.36 1.67 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.08 1.21 7.89 -51.93 -0.41 0.80 16 39 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 40 H 0.09 1.18 7.67 -51.93 -0.40 0.78 16 41 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.17 0.99 8.06 -52.48 -0.42 0.57 16 44 H 0.09 1.29 7.55 -51.93 -0.39 0.90 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.09 1.38 5.86 -51.93 -0.30 1.07 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 391.09 15.07 5.89 5.89 Total: -1.00 -29.99 391.09 -10.30 -40.29 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -6.68 Total: 3.50 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: -4.58 Total: 8.45 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: 0.00 Total: -61.52 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.99 -10.30 -40.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058283091.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.678 kcal (2) G-P(sol) polarization free energy of solvation -29.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds