Wall clock time and date at job start Tue Mar 31 2020 07:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99600 * 2 1 4 4 C 1.38737 * 120.05249 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94063 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05706 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47116 * 90.00278 * 7 6 5 9 9 C 1.50696 * 109.47110 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00042 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99865 * 179.97438 * 9 8 7 12 12 C 1.39475 * 119.99791 * 180.02562 * 11 9 8 13 13 C 1.36104 * 126.21492 * 359.69261 * 12 11 9 14 14 C 1.39760 * 107.82528 * 179.90331 * 13 12 11 15 15 C 1.50702 * 125.83543 * 180.13606 * 14 13 12 16 16 N 1.30848 * 108.32541 * 0.36542 * 14 13 12 17 17 N 1.35257 * 126.21395 * 179.97438 * 12 11 9 18 18 C 1.46498 * 126.04673 * 359.96809 * 17 12 11 19 19 C 1.50704 * 109.47257 * 89.99930 * 18 17 12 20 20 H 1.07997 * 119.99951 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00103 * 179.97438 * 19 18 17 22 22 N 1.31507 * 119.99948 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99824 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47196 * 89.99927 * 23 21 19 25 25 H 1.48500 * 109.46889 * 210.00071 * 23 21 19 26 26 H 1.48498 * 109.47217 * 329.99561 * 23 21 19 27 27 C 1.38263 * 120.11156 * 0.25962 * 6 5 4 28 28 C 1.38143 * 120.05579 * 359.44512 * 27 6 5 29 29 H 1.08995 * 109.47478 * 299.99538 * 1 2 3 30 30 H 1.08998 * 109.47227 * 59.99807 * 1 2 3 31 31 H 1.08996 * 109.47049 * 179.97438 * 1 2 3 32 32 H 1.07994 * 120.02908 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.97159 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.46646 * 209.99692 * 7 6 5 35 35 H 1.09000 * 109.47248 * 330.00409 * 7 6 5 36 36 H 1.09000 * 109.47214 * 300.00167 * 8 7 6 37 37 H 1.09008 * 109.47142 * 59.99333 * 8 7 6 38 38 H 0.96998 * 119.99578 * 0.02562 * 11 9 8 39 39 H 1.08003 * 126.09089 * 0.02562 * 13 12 11 40 40 H 1.08991 * 109.47454 * 270.23653 * 15 14 13 41 41 H 1.09000 * 109.47275 * 30.24178 * 15 14 13 42 42 H 1.09007 * 109.46865 * 150.23406 * 15 14 13 43 43 H 1.09004 * 109.47209 * 209.99628 * 18 17 12 44 44 H 1.09001 * 109.47539 * 329.99609 * 18 17 12 45 45 H 0.97007 * 119.99812 * 179.97438 * 22 21 19 46 46 H 1.08001 * 119.97259 * 179.69844 * 27 6 5 47 47 H 1.07992 * 120.02912 * 180.24892 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3017 3.6759 0.0016 7 6 3.9859 5.0187 0.0028 8 6 4.2167 5.4747 -1.4393 9 6 4.9003 6.8177 -1.4382 10 8 5.1762 7.3568 -0.3874 11 7 5.2061 7.4193 -2.6049 12 6 5.8392 8.6620 -2.6038 13 6 6.1992 9.3801 -1.5051 14 6 6.8053 10.5602 -1.9450 15 6 7.3595 11.6492 -1.0630 16 7 6.8048 10.5599 -3.2534 17 7 6.2022 9.3749 -3.6945 18 6 6.0005 8.9779 -5.0901 19 6 4.6651 9.4862 -5.5690 20 1 4.0299 10.0483 -4.9005 21 6 4.2542 9.2336 -6.8607 22 7 3.0886 9.6767 -7.2784 23 14 5.3531 8.2620 -8.0173 24 1 5.0399 6.8152 -7.8989 25 1 5.1174 8.7068 -9.4143 26 1 6.7756 8.4916 -7.6581 27 6 1.9209 3.6048 0.0081 28 6 1.2914 2.3752 0.0014 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 4.0208 0.3801 -0.0005 33 1 5.1344 2.5752 -0.0008 34 1 3.3580 5.7459 0.5176 35 1 4.9441 4.9378 0.5160 36 1 4.8445 4.7475 -1.9543 37 1 3.2585 5.5555 -1.9527 38 1 4.9857 6.9879 -3.4453 39 1 6.0457 9.0890 -0.4764 40 1 6.5774 12.3780 -0.8505 41 1 7.7147 11.2146 -0.1286 42 1 8.1876 12.1427 -1.5719 43 1 6.7931 9.4021 -5.7067 44 1 6.0239 7.8908 -5.1658 45 1 2.7996 9.4993 -8.1873 46 1 1.3340 4.5114 0.0143 47 1 0.2129 2.3202 0.0024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058289402.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:36 Heat of formation + Delta-G solvation = 23.179879 kcal Electronic energy + Delta-G solvation = -28440.251067 eV Core-core repulsion = 24397.032399 eV Total energy + Delta-G solvation = -4043.218668 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.94003 -40.42389 -39.31133 -37.96111 -34.79858 -33.80808 -33.69319 -32.17019 -31.35338 -29.98241 -29.39679 -28.26773 -27.47847 -26.32220 -24.65492 -22.91990 -22.53645 -21.59948 -20.75545 -19.72234 -19.26998 -18.44797 -17.22271 -16.98509 -16.64367 -16.52760 -16.05695 -15.65767 -15.40026 -14.94689 -14.63696 -14.53134 -14.13217 -14.01902 -13.91145 -13.72566 -13.21663 -13.04914 -13.03560 -12.72003 -12.59512 -12.38366 -12.29890 -12.26260 -11.89672 -11.85664 -11.58057 -11.33159 -11.20265 -11.14600 -10.94423 -10.84562 -10.47869 -10.23573 -9.95035 -9.77352 -9.53481 -9.25978 -8.87808 -8.34476 -7.95951 -7.48659 -6.34912 -4.39315 1.08311 1.14078 2.22583 2.76504 2.95675 3.05478 3.07431 3.16153 3.17332 3.47679 3.56401 3.71483 4.12985 4.48164 4.49983 4.60301 4.73645 4.78389 4.84177 4.91543 4.94774 5.03675 5.09436 5.14845 5.21480 5.29967 5.36093 5.46790 5.61547 5.65508 5.82922 5.95884 6.01668 6.02729 6.03849 6.10024 6.14689 6.21771 6.32243 6.37271 6.43117 6.50200 6.64237 6.74742 7.08572 7.18943 7.44728 7.56025 7.76642 8.17307 8.31310 8.57138 8.71519 9.19821 10.77335 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009662 B = 0.002475 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.185164 B =11309.265581 C =13494.475832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.120 3.880 4 C -0.151 4.151 5 C -0.076 4.076 6 C -0.117 4.117 7 C -0.060 4.060 8 C -0.131 4.131 9 C 0.519 3.481 10 O -0.515 6.515 11 N -0.642 5.642 12 C 0.305 3.695 13 C -0.293 4.293 14 C 0.054 3.946 15 C -0.063 4.063 16 N -0.284 5.284 17 N -0.345 5.345 18 C 0.230 3.770 19 C -0.545 4.545 20 H 0.081 0.919 21 C 0.080 3.920 22 N -0.883 5.883 23 Si 0.871 3.129 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.263 1.263 27 C -0.074 4.074 28 C -0.206 4.206 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.415 0.585 39 H 0.163 0.837 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.035 0.965 45 H 0.270 0.730 46 H 0.127 0.873 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.642 -17.413 14.804 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.075 3.925 4 C -0.169 4.169 5 C -0.094 4.094 6 C -0.117 4.117 7 C -0.098 4.098 8 C -0.171 4.171 9 C 0.306 3.694 10 O -0.390 6.390 11 N -0.289 5.289 12 C 0.083 3.917 13 C -0.325 4.325 14 C -0.111 4.111 15 C -0.121 4.121 16 N -0.109 5.109 17 N -0.130 5.130 18 C 0.111 3.889 19 C -0.583 4.583 20 H 0.099 0.901 21 C -0.125 4.125 22 N -0.520 5.520 23 Si 0.697 3.303 24 H -0.196 1.196 25 H -0.204 1.204 26 H -0.187 1.187 27 C -0.092 4.092 28 C -0.224 4.224 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.251 0.749 39 H 0.180 0.820 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.052 0.948 45 H 0.080 0.920 46 H 0.145 0.855 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.223 -16.669 14.197 21.930 hybrid contribution -0.443 -1.071 -0.844 1.433 sum -1.666 -17.740 13.353 22.266 Atomic orbital electron populations 1.23052 0.78376 1.03905 1.01454 1.86061 1.21411 1.27083 1.88816 1.19063 0.92432 0.84124 0.96880 1.20424 0.91341 0.98695 1.06461 1.20912 0.99973 0.90927 0.97545 1.19814 0.93541 0.95150 1.03224 1.20275 1.01641 0.92877 0.94961 1.21659 1.02394 0.93352 0.99731 1.20702 0.78704 0.87258 0.82714 1.90632 1.52101 1.65241 1.30986 1.42882 1.57962 1.17443 1.10635 1.17961 0.98124 0.86369 0.89297 1.21279 1.15336 0.97007 0.98852 1.22063 1.00329 0.96723 0.91992 1.20031 1.00359 0.94839 0.96898 1.77360 1.20193 1.01606 1.11695 1.48891 1.44962 1.13169 1.05950 1.19928 0.99657 0.95119 0.74234 1.21191 1.00803 1.37377 0.98957 0.90087 1.24822 0.94982 0.95245 0.97409 1.69871 1.19466 1.44551 1.18085 0.86922 0.81565 0.80600 0.81196 1.19635 1.20353 1.18747 1.20915 0.94062 0.97174 0.97055 1.21238 1.00046 0.92354 1.08810 0.92645 0.92550 0.88294 0.85272 0.85165 0.89957 0.89974 0.88341 0.88117 0.74855 0.81956 0.91169 0.91076 0.91527 0.92767 0.94751 0.92023 0.85500 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.00 10.50 -19.44 -0.20 -3.21 16 3 C 0.12 1.18 6.69 -39.21 -0.26 0.92 16 4 C -0.15 -1.41 9.99 -39.43 -0.39 -1.80 16 5 C -0.08 -0.67 9.69 -39.61 -0.38 -1.05 16 6 C -0.12 -1.09 5.14 -104.60 -0.54 -1.63 16 7 C -0.06 -0.58 4.63 -27.88 -0.13 -0.71 16 8 C -0.13 -1.34 5.68 -27.89 -0.16 -1.49 16 9 C 0.52 7.61 7.79 -10.98 -0.09 7.52 16 10 O -0.52 -8.86 13.11 5.56 0.07 -8.79 16 11 N -0.64 -10.74 5.42 -11.46 -0.06 -10.80 16 12 C 0.30 6.29 7.66 -153.16 -1.17 5.12 16 13 C -0.29 -5.92 9.58 -39.78 -0.38 -6.30 16 14 C 0.05 1.08 7.21 -82.44 -0.59 0.48 16 15 C -0.06 -0.92 10.44 36.01 0.38 -0.54 16 16 N -0.28 -6.53 12.56 33.65 0.42 -6.11 16 17 N -0.34 -7.91 3.60 -61.57 -0.22 -8.13 16 18 C 0.23 5.37 5.07 -5.19 -0.03 5.35 16 19 C -0.55 -14.85 9.94 -34.44 -0.34 -15.19 16 20 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 21 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 22 N -0.88 -25.61 13.96 55.43 0.77 -24.84 16 23 Si 0.87 19.45 27.47 -169.99 -4.67 14.78 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 26 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 27 C -0.07 -0.68 9.69 -39.61 -0.38 -1.06 16 28 C -0.21 -1.85 9.04 -39.43 -0.36 -2.21 16 29 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 30 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 35 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.10 0.94 8.14 -51.92 -0.42 0.52 16 38 H 0.42 6.26 7.97 -40.82 -0.33 5.93 16 39 H 0.16 3.17 5.83 -52.48 -0.31 2.87 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 1.29 7.20 -51.93 -0.37 0.92 16 44 H 0.03 0.72 6.93 -51.93 -0.36 0.36 16 45 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 47 H 0.13 0.90 6.30 -52.49 -0.33 0.57 16 LS Contribution 395.92 15.07 5.97 5.97 Total: -1.00 -34.12 395.92 -8.58 -42.70 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.72 Total: 7.80 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -3.94 Total: -9.39 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 0.91 Total: -49.87 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -0.13 Total: -12.00 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.67 Total: 14.78 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.12 -8.58 -42.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058289402.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.884 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds