Wall clock time and date at job start Tue Mar 31 2020 06:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47165 * 2 1 4 4 C 1.34215 * 119.35647 * 89.99628 * 3 2 1 5 5 O 1.21570 * 118.59243 * 0.02562 * 4 3 2 6 6 N 1.34417 * 122.81542 * 179.97438 * 4 3 2 7 7 H 0.96995 * 119.66830 * 180.02562 * 6 4 3 8 8 C 1.38794 * 120.65480 * 0.02562 * 6 4 3 9 9 C 1.38533 * 121.52549 * 180.26469 * 8 6 4 10 10 C 1.39424 * 119.50330 * 180.21782 * 9 8 6 11 11 C 1.47884 * 119.84681 * 179.76444 * 10 9 8 12 12 O 1.21585 * 120.00368 * 327.15459 * 11 10 9 13 13 N 1.34778 * 119.99992 * 147.15156 * 11 10 9 14 14 C 1.36740 * 119.99863 * 5.95510 * 13 11 10 15 15 H 1.08000 * 119.99799 * 308.72051 * 14 13 11 16 16 C 1.39141 * 120.00204 * 128.72222 * 14 13 11 17 17 N 1.31302 * 120.00078 * 342.92396 * 16 14 13 18 18 Si 1.86797 * 119.99869 * 162.93054 * 16 14 13 19 19 H 1.48504 * 109.46973 * 179.97438 * 18 16 14 20 20 H 1.48499 * 109.47215 * 299.99457 * 18 16 14 21 21 H 1.48496 * 109.47613 * 59.99922 * 18 16 14 22 22 C 1.46497 * 119.99973 * 185.94915 * 13 11 10 23 23 C 1.53002 * 117.49747 * 181.64956 * 22 13 11 24 24 C 1.52995 * 60.00136 * 252.51524 * 23 22 13 25 25 C 1.39870 * 120.30143 * 359.49255 * 10 9 8 26 26 C 1.36698 * 120.40808 * 0.25118 * 25 10 9 27 27 C 1.39343 * 119.84221 * 0.02562 * 26 25 10 28 28 C 1.35055 * 119.35518 * 269.97721 * 3 2 1 29 29 O 1.21572 * 120.85444 * 0.04078 * 28 3 2 30 30 H 1.08998 * 109.46940 * 60.00374 * 1 2 3 31 31 H 1.09008 * 109.46862 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47447 * 300.00191 * 1 2 3 33 33 H 1.08993 * 109.47447 * 239.99809 * 2 1 3 34 34 H 1.09003 * 109.47313 * 119.99888 * 2 1 3 35 35 H 1.08003 * 120.24550 * 359.97438 * 9 8 6 36 36 H 0.96991 * 120.00308 * 175.07175 * 17 16 14 37 37 H 1.08993 * 115.55339 * 327.35872 * 22 13 11 38 38 H 1.09008 * 117.50176 * 0.02562 * 23 22 13 39 39 H 1.09002 * 117.50290 * 145.01888 * 23 22 13 40 40 H 1.09004 * 117.49145 * 252.51088 * 24 23 22 41 41 H 1.09000 * 117.51913 * 107.48454 * 24 23 22 42 42 H 1.08004 * 119.79884 * 180.27925 * 25 10 9 43 43 H 1.07998 * 120.07931 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2375 2.0016 1.1698 5 8 2.0229 1.3932 2.2002 6 7 2.6853 3.2664 1.2509 7 1 2.8283 3.6702 2.1211 8 6 2.9448 4.0002 0.1018 9 6 3.4118 5.3030 0.1643 10 6 3.6542 6.0030 -1.0168 11 6 4.1478 7.3958 -0.9589 12 8 3.8044 8.1251 -0.0487 13 7 4.9783 7.8568 -1.9151 14 6 5.2679 7.0793 -3.0020 15 1 5.6066 6.0631 -2.8641 16 6 5.1264 7.5973 -4.2856 17 7 4.4136 8.6826 -4.4807 18 14 5.9505 6.7487 -5.7313 19 1 5.6473 7.4927 -6.9803 20 1 7.4195 6.7194 -5.5163 21 1 5.4392 5.3594 -5.8469 22 6 5.5705 9.1909 -1.7900 23 6 6.4742 9.6720 -2.9270 24 6 7.0838 9.2752 -1.5810 25 6 3.4381 5.3919 -2.2563 26 6 2.9825 4.1048 -2.3231 27 6 2.7309 3.3965 -1.1498 28 6 2.2394 2.0052 -1.1771 29 8 2.0378 1.4359 -2.2322 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.5830 5.7742 1.1210 36 1 4.3732 9.0844 -5.3625 37 1 4.9511 9.9352 -1.2897 38 1 6.6278 8.9961 -3.7683 39 1 6.4493 10.7332 -3.1750 40 1 7.4600 10.0753 -0.9435 41 1 7.6387 8.3380 -1.5362 42 1 3.6329 5.9402 -3.1662 43 1 2.8171 3.6383 -3.2830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058304486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:02 Heat of formation + Delta-G solvation = -17.274971 kcal Electronic energy + Delta-G solvation = -30122.097635 eV Core-core repulsion = 25941.291619 eV Total energy + Delta-G solvation = -4180.806016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.136 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.17507 -39.65243 -38.96617 -38.24421 -36.31879 -35.50363 -35.30000 -33.36797 -31.86513 -31.67182 -30.43590 -29.43833 -25.64524 -25.27976 -24.07573 -23.06562 -22.61722 -21.50005 -21.25003 -19.92016 -19.14583 -18.66089 -18.10384 -17.14521 -16.85760 -16.42193 -15.92758 -15.45979 -15.32059 -15.04656 -14.50618 -14.38375 -14.30866 -14.08980 -13.95270 -13.73066 -13.43818 -13.40498 -13.04751 -12.61308 -12.44479 -12.31557 -12.17645 -11.64480 -11.46475 -11.32420 -11.08323 -10.99803 -10.86879 -10.79760 -10.55114 -10.52871 -10.28797 -9.90744 -9.87889 -9.48406 -9.09681 -8.83885 -8.68183 -8.04012 -7.51235 -6.59065 -4.43634 0.66489 1.40712 2.04563 2.08272 2.89098 3.00079 3.01046 3.08679 3.10063 3.63230 3.86229 4.12161 4.23247 4.38143 4.60408 4.78145 4.86445 4.95249 5.01978 5.05490 5.21012 5.32462 5.48574 5.52601 5.59484 5.69252 5.72728 5.85239 5.92908 5.97168 5.98272 5.98533 6.12081 6.26282 6.36760 6.58780 6.60717 6.72255 6.83734 6.90316 7.06951 7.13608 7.20053 7.25599 7.41688 7.79248 7.91186 8.08175 8.75706 9.15281 9.62465 10.38856 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016386 B = 0.003411 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.410035 B = 8206.701282 C = 9482.255373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.107 3.893 3 N -0.559 5.559 4 C 0.707 3.293 5 O -0.555 6.555 6 N -0.642 5.642 7 H 0.433 0.567 8 C 0.173 3.827 9 C -0.126 4.126 10 C -0.017 4.017 11 C 0.517 3.483 12 O -0.590 6.590 13 N -0.398 5.398 14 C -0.364 4.364 15 H 0.092 0.908 16 C 0.061 3.939 17 N -0.831 5.831 18 Si 0.898 3.102 19 H -0.280 1.280 20 H -0.268 1.268 21 H -0.264 1.264 22 C 0.105 3.895 23 C -0.148 4.148 24 C -0.213 4.213 25 C -0.101 4.101 26 C -0.040 4.040 27 C -0.193 4.193 28 C 0.565 3.435 29 O -0.497 6.497 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.141 0.859 36 H 0.275 0.725 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.182 0.818 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.491 -9.147 3.970 10.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.014 4.014 3 N -0.304 5.304 4 C 0.409 3.591 5 O -0.431 6.431 6 N -0.289 5.289 7 H 0.274 0.726 8 C 0.075 3.925 9 C -0.148 4.148 10 C -0.021 4.021 11 C 0.306 3.694 12 O -0.475 6.475 13 N -0.114 5.114 14 C -0.492 4.492 15 H 0.110 0.890 16 C -0.150 4.150 17 N -0.463 5.463 18 Si 0.722 3.278 19 H -0.205 1.205 20 H -0.193 1.193 21 H -0.189 1.189 22 C 0.000 4.000 23 C -0.186 4.186 24 C -0.252 4.252 25 C -0.120 4.120 26 C -0.059 4.059 27 C -0.199 4.199 28 C 0.358 3.642 29 O -0.370 6.370 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.159 0.841 36 H 0.086 0.914 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.199 0.801 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.058 -9.446 4.113 10.506 hybrid contribution 0.573 -0.037 -0.464 0.738 sum -1.486 -9.483 3.649 10.269 Atomic orbital electron populations 1.22076 0.94524 1.03011 1.02760 1.21701 0.95605 0.79244 1.04869 1.46237 1.61576 1.16542 1.06001 1.15542 0.78281 0.81361 0.83964 1.91007 1.56453 1.63454 1.32138 1.42669 1.64714 1.11759 1.09728 0.72609 1.17745 0.97700 0.92083 0.84983 1.20625 1.03224 0.91253 0.99698 1.20142 0.94781 0.94499 0.92677 1.18260 0.80140 0.86602 0.84401 1.90656 1.60291 1.58425 1.38122 1.42566 1.37415 1.13134 1.18251 1.19248 1.48156 0.98221 0.83551 0.89041 1.25464 0.94311 0.96536 0.98712 1.69987 1.31828 1.19979 1.24485 0.86474 0.80487 0.80241 0.80600 1.20484 1.19327 1.18908 1.21226 0.88805 0.87676 1.02308 1.23095 1.02407 1.00265 0.92811 1.23351 0.98049 1.02345 1.01427 1.22349 0.95000 0.93937 1.00675 1.20812 0.94343 0.94151 0.96609 1.19486 1.12762 0.93994 0.93636 1.18607 0.76288 0.86403 0.82855 1.90791 1.49564 1.67296 1.29379 0.92006 0.90655 0.91988 0.88422 0.88376 0.84083 0.91449 0.87497 0.87219 0.90412 0.90124 0.89358 0.80073 0.84092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 10.23 37.16 0.38 -1.27 16 2 C 0.11 1.19 5.76 -4.04 -0.02 1.16 16 3 N -0.56 -7.63 2.55 -122.04 -0.31 -7.94 16 4 C 0.71 9.86 8.33 -87.74 -0.73 9.13 16 5 O -0.56 -8.54 16.49 5.30 0.09 -8.45 16 6 N -0.64 -8.15 5.35 -14.38 -0.08 -8.23 16 7 H 0.43 4.44 8.79 -40.82 -0.36 4.08 16 8 C 0.17 2.53 6.66 -83.71 -0.56 1.97 16 9 C -0.13 -2.02 9.49 -39.03 -0.37 -2.39 16 10 C -0.02 -0.32 5.58 -104.90 -0.59 -0.90 16 11 C 0.52 11.60 7.39 -12.31 -0.09 11.51 16 12 O -0.59 -14.46 16.54 5.29 0.09 -14.38 16 13 N -0.40 -8.97 2.72 -108.79 -0.30 -9.27 16 14 C -0.36 -7.94 5.27 -15.03 -0.08 -8.02 16 15 H 0.09 1.94 6.82 -52.49 -0.36 1.59 16 16 C 0.06 1.31 2.72 -17.44 -0.05 1.26 16 17 N -0.83 -19.26 11.74 55.51 0.65 -18.61 16 18 Si 0.90 17.00 29.32 -169.99 -4.98 12.02 16 19 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 21 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 22 C 0.10 2.26 5.64 -67.93 -0.38 1.88 16 23 C -0.15 -2.93 8.39 -26.73 -0.22 -3.15 16 24 C -0.21 -3.95 10.38 -26.73 -0.28 -4.23 16 25 C -0.10 -1.81 7.86 -39.53 -0.31 -2.12 16 26 C -0.04 -0.64 9.60 -39.73 -0.38 -1.02 16 27 C -0.19 -2.99 5.89 -104.79 -0.62 -3.61 16 28 C 0.57 8.63 7.65 -12.32 -0.09 8.54 16 29 O -0.50 -8.32 16.16 5.30 0.09 -8.24 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 1.03 7.41 -51.93 -0.38 0.64 16 34 H 0.10 1.02 7.30 -51.93 -0.38 0.64 16 35 H 0.14 2.08 7.96 -52.48 -0.42 1.66 16 36 H 0.27 6.09 8.31 -40.82 -0.34 5.75 16 37 H 0.11 2.40 7.77 -51.93 -0.40 2.00 16 38 H 0.11 2.32 4.97 -51.92 -0.26 2.07 16 39 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 42 H 0.18 3.57 5.06 -52.48 -0.27 3.31 16 43 H 0.14 2.09 7.79 -52.49 -0.41 1.68 16 LS Contribution 360.06 15.07 5.43 5.43 Total: -1.00 -27.36 360.06 -8.63 -35.99 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -4.91 Total: 12.94 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: -4.39 Total: 8.74 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -0.03 Total: -44.04 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: 0.26 Total: -31.07 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -4.98 Total: 12.02 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.36 -8.63 -35.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058304486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.711 kcal (2) G-P(sol) polarization free energy of solvation -27.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds