Wall clock time and date at job start Tue Mar 31 2020 06:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.28614 * 124.59843 * 2 1 4 4 C 1.33636 * 115.86020 * 179.73370 * 3 2 1 5 5 C 1.46719 * 123.29780 * 179.97438 * 4 3 2 6 6 C 1.35227 * 119.99903 * 0.02651 * 5 4 3 7 7 C 1.41717 * 120.00109 * 179.97438 * 6 5 4 8 8 O 1.21756 * 119.99493 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00225 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99811 * 0.02562 * 9 7 6 11 11 C 1.50705 * 109.47172 * 89.99954 * 10 9 7 12 12 H 1.07994 * 120.00203 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99711 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00442 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99697 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47282 * 90.00304 * 15 13 11 17 17 H 1.48496 * 109.47376 * 210.00013 * 15 13 11 18 18 H 1.48496 * 109.47345 * 330.00231 * 15 13 11 19 19 C 1.46497 * 119.99950 * 179.97438 * 9 7 6 20 20 C 1.50697 * 109.47311 * 90.00209 * 19 9 7 21 21 C 1.38669 * 120.41663 * 269.72019 * 20 19 9 22 22 C 1.38634 * 118.42331 * 179.78121 * 21 20 19 23 23 C 1.38230 * 119.15326 * 0.51491 * 22 21 20 24 24 N 1.31852 * 120.76930 * 359.72380 * 23 22 21 25 25 C 1.31886 * 121.72310 * 0.02562 * 24 23 22 26 26 C 1.36520 * 113.40523 * 359.97438 * 4 3 2 27 27 S 1.70732 * 124.59429 * 179.69590 * 2 1 3 28 28 H 1.08998 * 109.47026 * 90.00066 * 1 2 3 29 29 H 1.09001 * 109.47342 * 210.00472 * 1 2 3 30 30 H 1.09003 * 109.46728 * 330.00490 * 1 2 3 31 31 H 1.07995 * 119.99990 * 180.02562 * 5 4 3 32 32 H 1.07995 * 120.00107 * 359.97438 * 6 5 4 33 33 H 1.08998 * 109.47070 * 209.99924 * 10 9 7 34 34 H 1.09002 * 109.47246 * 330.00193 * 10 9 7 35 35 H 0.97003 * 120.00211 * 179.97438 * 14 13 11 36 36 H 1.08999 * 109.46813 * 210.00113 * 19 9 7 37 37 H 1.09001 * 109.47395 * 329.99900 * 19 9 7 38 38 H 1.08002 * 120.78951 * 0.02562 * 21 20 19 39 39 H 1.07997 * 120.42133 * 180.21793 * 22 21 20 40 40 H 1.07997 * 119.61548 * 179.75207 * 23 22 21 41 41 H 1.08001 * 119.62055 * 180.02562 * 25 24 23 42 42 H 1.08004 * 125.64899 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2373 1.0587 0.0000 4 6 3.5581 0.8557 0.0056 5 6 4.5406 1.9454 0.0059 6 6 4.1235 3.2317 0.0009 7 6 5.0724 4.2843 0.0018 8 8 6.2631 4.0304 0.0075 9 7 4.6567 5.5663 -0.0037 10 6 3.2240 5.8718 -0.0100 11 6 2.7273 5.9809 1.4087 12 1 3.4105 5.8367 2.2326 13 6 1.4007 6.2648 1.6547 14 7 0.5688 6.4409 0.6515 15 14 0.7850 6.3993 3.4132 16 1 0.9143 7.8041 3.8769 17 1 -0.6408 5.9883 3.4712 18 1 1.5918 5.5125 4.2894 19 6 5.6377 6.6544 -0.0022 20 6 5.9806 7.0236 -1.4225 21 6 7.0321 6.3989 -2.0759 22 6 7.3085 6.7672 -3.3835 23 6 6.5389 7.7456 -3.9846 24 7 5.5494 8.3219 -3.3308 25 6 5.2550 7.9932 -2.0880 26 6 3.9038 -0.4650 0.0110 27 16 2.4763 -1.4054 0.0075 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 5.5968 1.7202 0.0102 32 1 3.0673 3.4569 -0.0037 33 1 3.0561 6.8163 -0.5273 34 1 2.6849 5.0755 -0.5234 35 1 -0.3646 6.6403 0.8246 36 1 5.2176 7.5216 0.5073 37 1 6.5396 6.3298 0.5167 38 1 7.6194 5.6407 -1.5792 39 1 8.1178 6.2991 -3.9241 40 1 6.7502 8.0411 -5.0016 41 1 4.4369 8.4869 -1.5848 42 1 4.9122 -0.8518 0.0155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058311124.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:05 Heat of formation + Delta-G solvation = 61.940501 kcal Electronic energy + Delta-G solvation = -26496.057335 eV Core-core repulsion = 22761.439230 eV Total energy + Delta-G solvation = -3734.618105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 343.110 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.10694 -39.73217 -38.97167 -35.33025 -33.67176 -32.96845 -32.11940 -31.49540 -30.90059 -28.33362 -27.54722 -26.45793 -24.38664 -23.39310 -22.80400 -22.25734 -21.13929 -19.67980 -18.47242 -17.09891 -16.92094 -16.83100 -16.39069 -15.88101 -15.45039 -15.10114 -15.02346 -14.94267 -14.42121 -14.04554 -13.82202 -13.58123 -13.22089 -13.02119 -12.90244 -12.74068 -12.68136 -12.36969 -12.22174 -11.85537 -11.78544 -11.53526 -11.40343 -11.10815 -10.96605 -10.65187 -10.17956 -9.92706 -9.80515 -9.62005 -9.58169 -9.54250 -9.27651 -9.20844 -8.73813 -8.52463 -8.09196 -7.72528 -6.16024 -4.23416 0.51764 1.32395 1.34963 1.54733 1.59885 1.76200 3.13344 3.24268 3.31391 3.35502 3.83294 4.06618 4.10584 4.27150 4.37259 4.69760 4.98932 5.04837 5.13382 5.17018 5.20270 5.22970 5.27738 5.34084 5.36921 5.44999 5.57098 5.69918 5.82179 5.90066 5.94629 6.08133 6.17858 6.29042 6.37801 6.57197 6.62102 6.65910 6.89324 6.96389 7.21264 7.48423 7.77491 7.79286 8.05260 8.21048 8.24449 8.78174 8.93680 9.44139 10.90736 Molecular weight = 343.11amu Principal moments of inertia in cm(-1) A = 0.007731 B = 0.003915 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3620.836950 B = 7150.673283 C = 9679.831859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.034 3.966 3 N -0.441 5.441 4 C 0.096 3.904 5 C -0.041 4.041 6 C -0.144 4.144 7 C 0.547 3.453 8 O -0.579 6.579 9 N -0.582 5.582 10 C 0.235 3.765 11 C -0.538 4.538 12 H 0.061 0.939 13 C 0.068 3.932 14 N -0.888 5.888 15 Si 0.896 3.104 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.160 3.840 20 C -0.145 4.145 21 C -0.056 4.056 22 C -0.182 4.182 23 C 0.089 3.911 24 N -0.489 5.489 25 C 0.115 3.885 26 C -0.288 4.288 27 S 0.163 5.837 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.140 0.860 32 H 0.152 0.848 33 H 0.038 0.962 34 H 0.042 0.958 35 H 0.265 0.735 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.138 0.862 39 H 0.129 0.871 40 H 0.149 0.851 41 H 0.158 0.842 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.266 -10.977 -4.457 12.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.245 4.245 3 N -0.155 5.155 4 C -0.036 4.036 5 C -0.063 4.063 6 C -0.167 4.167 7 C 0.339 3.661 8 O -0.463 6.463 9 N -0.310 5.310 10 C 0.116 3.884 11 C -0.576 4.576 12 H 0.079 0.921 13 C -0.135 4.135 14 N -0.526 5.526 15 Si 0.723 3.277 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.198 1.198 19 C 0.036 3.964 20 C -0.148 4.148 21 C -0.082 4.082 22 C -0.202 4.202 23 C -0.068 4.068 24 N -0.198 5.198 25 C -0.042 4.042 26 C -0.428 4.428 27 S 0.420 5.580 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.157 0.843 32 H 0.170 0.830 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.156 0.844 39 H 0.147 0.853 40 H 0.167 0.833 41 H 0.175 0.825 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 4.639 -10.937 -4.909 12.854 hybrid contribution 0.656 0.199 1.352 1.516 sum 5.295 -10.738 -3.556 12.490 Atomic orbital electron populations 1.20471 0.85104 1.04385 1.03978 1.27132 1.02223 0.91061 1.04105 1.66994 1.03641 1.30441 1.14430 1.19631 0.89335 0.92226 1.02374 1.21592 0.96798 0.90295 0.97635 1.22563 1.02536 0.92555 0.99034 1.17093 0.88228 0.83788 0.77014 1.90685 1.17759 1.84643 1.53218 1.48204 1.09326 1.04069 1.69407 1.19548 0.73285 0.97774 0.97784 1.21444 0.94483 1.49660 0.92057 0.92078 1.24904 0.96542 0.94737 0.97343 1.69922 1.04628 1.47369 1.30643 0.86530 0.78086 0.78420 0.84651 1.20525 1.21067 1.19841 1.20142 0.93914 0.91482 0.90891 1.21430 0.96557 0.97575 0.99206 1.21669 0.95636 0.96882 0.94053 1.22102 1.01959 0.99934 0.96191 1.22690 0.91399 0.93156 0.99569 1.67703 1.16179 1.26928 1.08959 1.22818 0.97301 0.94027 0.90096 1.26723 1.04804 0.96939 1.14310 1.82554 0.96015 1.12698 1.66744 0.89585 0.90282 0.88781 0.84252 0.83037 0.94438 0.94024 0.92519 0.88954 0.89707 0.84436 0.85292 0.83321 0.82471 0.80370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.45 36.01 0.38 -0.44 16 2 C 0.03 0.47 7.33 -13.63 -0.10 0.37 16 3 N -0.44 -7.67 9.96 -8.37 -0.08 -7.75 16 4 C 0.10 1.57 6.66 -84.28 -0.56 1.01 16 5 C -0.04 -0.72 9.52 -37.23 -0.35 -1.07 16 6 C -0.14 -2.94 8.65 -39.33 -0.34 -3.28 16 7 C 0.55 11.56 7.44 -14.93 -0.11 11.45 16 8 O -0.58 -12.44 15.33 5.14 0.08 -12.36 16 9 N -0.58 -12.20 2.44 -179.83 -0.44 -12.64 16 10 C 0.24 5.60 4.85 -5.19 -0.03 5.57 16 11 C -0.54 -13.96 9.39 -34.44 -0.32 -14.28 16 12 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 13 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 14 N -0.89 -24.48 13.29 55.43 0.74 -23.74 16 15 Si 0.90 20.73 29.54 -169.99 -5.02 15.70 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 C 0.16 2.89 5.56 -5.20 -0.03 2.86 16 20 C -0.14 -2.44 5.48 -104.48 -0.57 -3.01 16 21 C -0.06 -0.87 9.86 -39.28 -0.39 -1.26 16 22 C -0.18 -2.46 10.11 -39.44 -0.40 -2.86 16 23 C 0.09 1.25 11.18 -17.55 -0.20 1.06 16 24 N -0.49 -8.19 10.36 -13.25 -0.14 -8.33 16 25 C 0.11 1.96 10.86 -17.55 -0.19 1.76 16 26 C -0.29 -3.66 10.99 30.11 0.33 -3.33 16 27 S 0.16 1.74 22.91 -107.50 -2.46 -0.73 16 28 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.14 2.25 7.45 -52.49 -0.39 1.86 16 32 H 0.15 3.42 5.62 -52.49 -0.30 3.13 16 33 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.04 1.06 6.08 -51.93 -0.32 0.75 16 35 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.09 1.60 8.02 -51.93 -0.42 1.19 16 37 H 0.08 1.50 7.37 -51.93 -0.38 1.11 16 38 H 0.14 2.14 7.70 -52.49 -0.40 1.74 16 39 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.15 1.61 8.06 -52.49 -0.42 1.18 16 41 H 0.16 2.61 8.06 -52.49 -0.42 2.19 16 42 H 0.18 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 382.03 15.07 5.76 5.76 Total: -1.00 -31.29 382.03 -9.68 -40.96 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.13 Total: 6.87 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -2.98 Total: -3.75 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.08 Total: -52.46 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.08 Total: -12.36 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.46 Total: -0.73 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.29 -9.68 -40.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058311124.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.905 kcal (2) G-P(sol) polarization free energy of solvation -31.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds