Wall clock time and date at job start Tue Mar 31 2020 06:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42105 * 110.54353 * 2 1 4 4 O 1.42103 * 110.54589 * 223.24571 * 2 1 3 5 5 N 1.65601 * 104.45158 * 111.62221 * 2 1 3 6 6 C 1.46927 * 120.62837 * 269.72513 * 5 2 1 7 7 C 1.53621 * 108.54358 * 126.36563 * 6 5 2 8 8 C 1.53043 * 109.24274 * 54.85370 * 7 6 5 9 9 C 1.53039 * 109.53746 * 298.51135 * 8 7 6 10 10 H 1.09003 * 109.49673 * 301.40947 * 9 8 7 11 11 C 1.50700 * 109.49941 * 181.31776 * 9 8 7 12 12 O 1.21280 * 120.00017 * 246.38663 * 11 9 8 13 13 N 1.34780 * 120.00291 * 66.38395 * 11 9 8 14 14 C 1.46505 * 119.99485 * 4.97440 * 13 11 9 15 15 C 1.50704 * 109.47167 * 95.51802 * 14 13 11 16 16 H 1.08001 * 119.99525 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99811 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00315 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99552 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47157 * 60.00640 * 19 17 15 21 21 H 1.48505 * 109.46925 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47338 * 300.00347 * 19 17 15 23 23 C 1.46489 * 120.00637 * 184.97240 * 13 11 9 24 24 C 1.53001 * 109.47312 * 84.97568 * 23 13 11 25 25 C 1.47200 * 109.47444 * 180.02562 * 24 23 13 26 26 N 9.16482 * 122.61469 * 225.10916 * 5 1 2 27 27 C 1.46928 * 120.62916 * 89.99539 * 5 2 1 28 28 H 1.09003 * 109.46810 * 68.37942 * 1 2 3 29 29 H 1.09003 * 109.47242 * 188.37744 * 1 2 3 30 30 H 1.09003 * 109.46946 * 308.37826 * 1 2 3 31 31 H 1.09004 * 109.58194 * 246.19516 * 6 5 2 32 32 H 1.08996 * 109.58779 * 6.61826 * 6 5 2 33 33 H 1.09003 * 109.63624 * 294.86101 * 7 6 5 34 34 H 1.09002 * 109.46062 * 174.73368 * 7 6 5 35 35 H 1.09004 * 109.45786 * 178.49006 * 8 7 6 36 36 H 1.09001 * 109.45153 * 58.52793 * 8 7 6 37 37 H 1.09006 * 109.46996 * 215.51647 * 14 13 11 38 38 H 1.08996 * 109.47450 * 335.52111 * 14 13 11 39 39 H 0.97002 * 120.00029 * 179.97438 * 18 17 15 40 40 H 1.08994 * 109.47619 * 204.97746 * 23 13 11 41 41 H 1.09010 * 109.46948 * 324.97994 * 23 13 11 42 42 H 1.09005 * 109.47323 * 300.00899 * 24 23 13 43 43 H 1.09001 * 109.46861 * 60.00172 * 24 23 13 44 44 H 1.08996 * 109.58797 * 353.37961 * 27 5 2 45 45 H 1.09007 * 109.57988 * 113.66335 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9693 -0.9117 5 7 2.2273 -0.5909 1.4908 6 6 2.4200 0.3179 2.6291 7 6 1.5317 -0.1569 3.7891 8 6 1.8442 -1.6233 4.0961 9 6 1.5313 -2.4812 2.8680 10 1 0.4820 -2.3615 2.5983 11 6 1.8086 -3.9289 3.1817 12 8 2.7077 -4.5112 2.6130 13 7 1.0575 -4.5765 4.0944 14 6 -0.0960 -3.9076 4.7014 15 6 -1.3473 -4.2835 3.9505 16 1 -1.2892 -4.9540 3.1058 17 6 -2.5663 -3.7723 4.3424 18 7 -2.6370 -2.9562 5.3713 19 14 -4.1175 -4.2388 3.4119 20 1 -4.3087 -5.7102 3.4746 21 1 -5.2866 -3.5607 4.0272 22 1 -3.9903 -3.8162 1.9941 23 6 1.3943 -5.9492 4.4794 24 6 2.4530 -5.9241 5.5837 25 6 2.7919 -7.3034 5.9701 26 7 3.0526 -8.3679 6.2690 27 6 2.4140 -2.0334 1.6988 28 1 -0.3633 0.3787 -0.9554 29 1 -0.3634 -1.0167 0.1497 30 1 -0.3633 0.6380 0.8056 31 1 3.4658 0.3024 2.9360 32 1 2.1366 1.3300 2.3406 33 1 0.4824 -0.0591 3.5108 34 1 1.7321 0.4502 4.6719 35 1 1.2349 -1.9562 4.9364 36 1 2.8993 -1.7242 4.3502 37 1 -0.1897 -4.2179 5.7422 38 1 0.0446 -2.8277 4.6556 39 1 -3.4946 -2.5963 5.6468 40 1 0.5000 -6.4539 4.8449 41 1 1.7851 -6.4839 3.6135 42 1 3.3473 -5.4193 5.2182 43 1 2.0622 -5.3894 6.4494 44 1 2.1267 -2.5729 0.7964 45 1 3.4599 -2.2369 1.9289 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058355455.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:53 Heat of formation + Delta-G solvation = -79.521010 kcal Electronic energy + Delta-G solvation = -29329.530600 eV Core-core repulsion = 25281.469344 eV Total energy + Delta-G solvation = -4048.061256 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.00819 -37.80902 -37.18343 -36.63640 -35.96929 -35.34814 -33.11741 -32.59876 -31.37509 -30.60788 -29.48853 -27.33061 -24.99590 -24.59607 -23.31019 -22.61927 -20.70015 -18.81272 -18.47699 -17.73347 -17.47592 -16.69321 -16.58680 -16.32989 -16.02979 -15.54266 -14.84823 -14.69025 -14.57236 -14.54443 -14.22716 -13.68957 -13.62567 -13.40709 -13.27071 -13.16485 -12.88441 -12.68000 -12.45824 -12.33586 -12.21556 -12.11499 -12.05032 -11.90782 -11.65853 -11.60135 -11.31725 -11.16039 -11.11786 -10.96977 -10.90386 -10.68329 -10.60811 -10.35469 -10.24373 -9.83486 -9.26032 -8.91488 -8.66267 -7.98849 -6.33945 -4.40927 0.22487 2.54684 2.80519 2.91668 3.12992 3.15418 3.19574 3.24436 3.59937 3.82595 4.09707 4.19968 4.31510 4.54257 4.77771 4.87770 4.96456 5.00027 5.02839 5.12144 5.17903 5.25250 5.32385 5.40482 5.52796 5.61883 5.64318 5.68601 5.80138 5.92942 5.95828 6.02715 6.16769 6.20892 6.22539 6.30827 6.44361 6.56229 6.58582 7.03034 7.30812 7.60311 7.67638 7.88584 8.10627 8.60725 8.78194 9.27456 10.72436 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.008707 B = 0.004458 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3215.110768 B = 6279.672397 C = 8275.263658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.675 4.675 2 S 2.610 3.390 3 O -0.961 6.961 4 O -0.955 6.955 5 N -0.997 5.997 6 C 0.120 3.880 7 C -0.133 4.133 8 C -0.115 4.115 9 C -0.121 4.121 10 H 0.111 0.889 11 C 0.525 3.475 12 O -0.566 6.566 13 N -0.593 5.593 14 C 0.223 3.777 15 C -0.543 4.543 16 H 0.061 0.939 17 C 0.068 3.932 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.126 3.874 24 C -0.045 4.045 25 C 0.221 3.779 26 N -0.450 5.450 27 C 0.143 3.857 28 H 0.123 0.877 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.036 0.964 38 H 0.060 0.940 39 H 0.267 0.733 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.093 0.907 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.390 8.687 -2.736 10.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.704 3.296 3 O -0.952 6.952 4 O -0.946 6.946 5 N -0.835 5.835 6 C -0.005 4.005 7 C -0.172 4.172 8 C -0.152 4.152 9 C -0.144 4.144 10 H 0.129 0.871 11 C 0.312 3.688 12 O -0.447 6.447 13 N -0.323 5.323 14 C 0.104 3.896 15 C -0.581 4.581 16 H 0.079 0.921 17 C -0.135 4.135 18 N -0.527 5.527 19 Si 0.721 3.279 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.202 1.202 23 C 0.000 4.000 24 C -0.086 4.086 25 C -0.097 4.097 26 N -0.127 5.127 27 C 0.018 3.982 28 H 0.142 0.858 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.111 0.889 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.688 7.187 -3.139 10.307 hybrid contribution -2.068 0.020 -0.110 2.071 sum 4.620 7.206 -3.249 9.156 Atomic orbital electron populations 1.30600 1.28507 1.12241 1.11092 1.04869 0.77756 0.73875 0.73135 1.93584 1.77809 1.37918 1.85856 1.93613 1.77579 1.61487 1.61871 1.57702 1.84126 1.14603 1.27047 1.21566 1.00585 0.92289 0.86031 1.22000 1.00557 0.96540 0.98106 1.21669 1.02124 0.94102 0.97349 1.21616 1.03127 0.92309 0.97320 0.87053 1.20330 0.81238 0.88444 0.78756 1.90640 1.33166 1.68977 1.51867 1.48170 1.29708 1.13434 1.40946 1.19830 0.81454 0.94327 0.94001 1.21454 0.91568 1.29589 1.15511 0.92073 1.24891 0.98976 0.94723 0.94947 1.69881 1.26170 1.31164 1.25463 0.86630 0.82275 0.79005 0.80024 1.20071 1.21131 1.20152 1.21101 0.97299 0.85261 0.96315 1.19772 1.02254 0.84960 1.01629 1.29105 0.92839 0.94949 0.92842 1.81181 1.09554 1.12350 1.09632 1.21207 1.00718 0.77759 0.98550 0.85796 0.84905 0.85256 0.90907 0.89355 0.90838 0.90478 0.88975 0.91776 0.94592 0.92272 0.92371 0.89143 0.90181 0.87361 0.87107 0.88856 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -5.99 10.99 101.05 1.11 -4.88 16 2 S 2.61 30.04 6.06 -107.50 -0.65 29.39 16 3 O -0.96 -13.09 16.71 -57.54 -0.96 -14.05 16 4 O -0.96 -14.30 16.72 -57.54 -0.96 -15.26 16 5 N -1.00 -11.41 3.21 -113.27 -0.36 -11.77 16 6 C 0.12 1.18 6.34 -3.49 -0.02 1.16 16 7 C -0.13 -1.34 6.10 -26.39 -0.16 -1.50 16 8 C -0.11 -1.38 4.76 -26.69 -0.13 -1.51 16 9 C -0.12 -1.71 1.83 -91.65 -0.17 -1.88 16 10 H 0.11 1.69 7.70 -51.93 -0.40 1.29 16 11 C 0.52 8.66 6.94 -10.98 -0.08 8.58 16 12 O -0.57 -10.46 15.52 5.56 0.09 -10.37 16 13 N -0.59 -9.81 2.47 -175.06 -0.43 -10.25 16 14 C 0.22 4.26 4.57 -5.19 -0.02 4.23 16 15 C -0.54 -12.24 9.38 -34.44 -0.32 -12.57 16 16 H 0.06 1.43 7.81 -52.49 -0.41 1.02 16 17 C 0.07 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -21.70 13.29 55.43 0.74 -20.97 16 19 Si 0.89 18.86 29.54 -169.99 -5.02 13.84 16 20 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 23 C 0.13 1.85 5.37 -4.05 -0.02 1.83 16 24 C -0.04 -0.53 5.99 -29.52 -0.18 -0.71 16 25 C 0.22 3.03 15.43 -20.76 -0.32 2.71 16 26 N -0.45 -7.29 18.54 42.15 0.78 -6.51 16 27 C 0.14 1.90 5.00 -3.71 -0.02 1.88 16 28 H 0.12 0.90 8.14 -51.92 -0.42 0.47 16 29 H 0.13 1.21 8.14 -51.92 -0.42 0.79 16 30 H 0.13 0.99 8.14 -51.92 -0.42 0.57 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.77 7.09 -51.93 -0.37 0.40 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.09 1.23 5.37 -51.93 -0.28 0.95 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.04 0.73 8.11 -51.93 -0.42 0.30 16 38 H 0.06 1.11 4.00 -51.93 -0.21 0.90 16 39 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 40 H 0.09 1.37 8.03 -51.93 -0.42 0.95 16 41 H 0.08 1.24 7.51 -51.92 -0.39 0.85 16 42 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.09 1.31 7.10 -51.93 -0.37 0.94 16 45 H 0.08 1.12 7.87 -51.92 -0.41 0.71 16 LS Contribution 383.73 15.07 5.78 5.78 Total: -1.00 -31.01 383.73 -8.04 -39.05 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.61 Total: 2.23 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -0.43 Total: -1.12 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.72 Total: -49.49 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -1.84 Total: -39.68 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.84 kcal Atomic # 16 Polarization: 30.04 SS G_CDS: -0.65 Total: 29.39 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.01 -8.04 -39.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058355455.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.467 kcal (2) G-P(sol) polarization free energy of solvation -31.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds