Wall clock time and date at job start Tue Mar 31 2020 06:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42102 * 110.54569 * 2 1 4 4 O 1.42098 * 110.54400 * 223.24274 * 2 1 3 5 5 N 1.65605 * 104.44601 * 111.61834 * 2 1 3 6 6 C 1.46959 * 120.65684 * 269.81786 * 5 2 1 7 7 C 1.53181 * 108.89302 * 233.53139 * 6 5 2 8 8 C 1.53039 * 109.31363 * 305.44732 * 7 6 5 9 9 C 1.53039 * 109.54017 * 61.36275 * 8 7 6 10 10 H 1.09006 * 109.52293 * 58.60481 * 9 8 7 11 11 C 1.50703 * 109.49809 * 178.68294 * 9 8 7 12 12 O 1.21280 * 119.99723 * 87.43709 * 11 9 8 13 13 N 1.34773 * 119.99924 * 267.44115 * 11 9 8 14 14 C 1.46498 * 120.00429 * 4.08317 * 13 11 9 15 15 C 1.50701 * 109.46826 * 84.40734 * 14 13 11 16 16 H 1.08005 * 119.99948 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00180 * 180.02562 * 15 14 13 18 18 N 1.31523 * 119.99891 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00312 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47059 * 89.99970 * 19 17 15 21 21 H 1.48504 * 109.47317 * 209.99694 * 19 17 15 22 22 H 1.48495 * 109.47084 * 330.00073 * 19 17 15 23 23 C 1.46503 * 119.99532 * 184.08969 * 13 11 9 24 24 C 1.53002 * 109.47171 * 84.95445 * 23 13 11 25 25 C 1.47201 * 109.46924 * 183.22886 * 24 23 13 26 26 N 9.87455 * 109.54726 * 167.40697 * 2 1 3 27 27 C 1.46924 * 120.62994 * 90.00265 * 5 2 1 28 28 H 1.09001 * 109.47340 * 308.38098 * 1 2 3 29 29 H 1.09009 * 109.46858 * 68.37676 * 1 2 3 30 30 H 1.08994 * 109.47313 * 188.37810 * 1 2 3 31 31 H 1.09007 * 109.46357 * 113.74564 * 6 5 2 32 32 H 1.09006 * 109.59559 * 353.39841 * 6 5 2 33 33 H 1.08997 * 109.49986 * 185.48848 * 7 6 5 34 34 H 1.09001 * 109.49628 * 65.39789 * 7 6 5 35 35 H 1.09000 * 109.46263 * 301.34014 * 8 7 6 36 36 H 1.09005 * 109.46164 * 181.38003 * 8 7 6 37 37 H 1.08998 * 109.47399 * 204.40556 * 14 13 11 38 38 H 1.08996 * 109.46928 * 324.41049 * 14 13 11 39 39 H 0.97000 * 119.99807 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.46488 * 204.95231 * 23 13 11 41 41 H 1.08992 * 109.47083 * 324.94984 * 23 13 11 42 42 H 1.08994 * 109.46757 * 303.22881 * 24 23 13 43 43 H 1.08998 * 109.47034 * 63.23426 * 24 23 13 44 44 H 1.09007 * 109.58622 * 6.60509 * 27 5 2 45 45 H 1.08997 * 109.58794 * 246.32493 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9116 5 7 2.2271 -0.5908 1.4909 6 6 2.4179 0.3175 2.6303 7 6 3.7945 0.0548 3.2488 8 6 3.9163 -1.4295 3.6009 9 6 3.7906 -2.2695 2.3279 10 1 4.5681 -1.9789 1.6214 11 6 3.9430 -3.7290 2.6712 12 8 2.9742 -4.3778 3.0050 13 7 5.1559 -4.3132 2.6075 14 6 6.3399 -3.5104 2.2917 15 6 6.8615 -2.8677 3.5511 16 1 6.3612 -3.0404 4.4926 17 6 7.9773 -2.0594 3.5014 18 7 8.5867 -1.8495 2.3550 19 14 8.6234 -1.2622 5.0623 20 1 9.6115 -2.1644 5.7064 21 1 9.2771 0.0279 4.7253 22 1 7.4952 -1.0164 5.9961 23 6 5.2901 -5.7511 2.8538 24 6 5.0138 -6.5183 1.5592 25 6 5.0725 -7.9651 1.8243 26 7 5.1178 -9.0816 2.0288 27 6 2.4139 -2.0332 1.6990 28 1 -0.3634 0.6381 0.8056 29 1 -0.3633 0.3787 -0.9554 30 1 -0.3633 -1.0166 0.1497 31 1 1.6422 0.1350 3.3741 32 1 2.3624 1.3507 2.2875 33 1 3.9075 0.6537 4.1525 34 1 4.5719 0.3242 2.5339 35 1 3.1236 -1.7039 4.2969 36 1 4.8857 -1.6146 4.0638 37 1 7.1108 -4.1521 1.8651 38 1 6.0727 -2.7362 1.5725 39 1 9.3720 -1.2811 2.3201 40 1 6.3021 -5.9681 3.1958 41 1 4.5751 -6.0572 3.6173 42 1 4.0234 -6.2571 1.1865 43 1 5.7639 -6.2549 0.8136 44 1 2.3558 -2.5511 0.7416 45 1 1.6381 -2.4097 2.3657 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058355458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:57 Heat of formation + Delta-G solvation = -81.420696 kcal Electronic energy + Delta-G solvation = -29348.262140 eV Core-core repulsion = 25300.118507 eV Total energy + Delta-G solvation = -4048.143633 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.85394 -37.73491 -37.18524 -36.59558 -35.94299 -35.23659 -33.08878 -32.34093 -31.39022 -30.53987 -29.62017 -27.23691 -24.97191 -24.36789 -23.29080 -22.60275 -20.59340 -18.73666 -18.37090 -17.72785 -17.41933 -16.64425 -16.45909 -16.32766 -16.01350 -15.53731 -14.72069 -14.55078 -14.51536 -14.38423 -14.15906 -13.83811 -13.58267 -13.34602 -13.28668 -13.09754 -12.86896 -12.64094 -12.39642 -12.31374 -12.19511 -12.10409 -11.92082 -11.82715 -11.70326 -11.55394 -11.16559 -11.12340 -11.04980 -10.90233 -10.71528 -10.67746 -10.43121 -10.25679 -10.07871 -9.78054 -9.18225 -8.81181 -8.60170 -7.93236 -6.25119 -4.31873 0.16785 2.55548 2.83756 2.94014 3.18486 3.22210 3.27372 3.30420 3.65629 3.83545 4.03899 4.26680 4.36034 4.49872 4.76271 4.76894 5.07206 5.10478 5.19840 5.24023 5.30364 5.34995 5.43529 5.44470 5.53630 5.64477 5.66327 5.77628 5.85293 6.00125 6.05778 6.15033 6.22653 6.30073 6.39437 6.58249 6.63394 6.71760 6.86371 7.13013 7.38089 7.68761 7.69946 7.96812 8.14262 8.69537 8.85351 9.35172 10.81703 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.008250 B = 0.004731 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3393.235352 B = 5916.526100 C = 8286.590779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.676 4.676 2 S 2.609 3.391 3 O -0.955 6.955 4 O -0.951 6.951 5 N -0.996 5.996 6 C 0.117 3.883 7 C -0.127 4.127 8 C -0.110 4.110 9 C -0.111 4.111 10 H 0.107 0.893 11 C 0.529 3.471 12 O -0.572 6.572 13 N -0.593 5.593 14 C 0.233 3.767 15 C -0.537 4.537 16 H 0.063 0.937 17 C 0.069 3.931 18 N -0.886 5.886 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.126 3.874 24 C -0.046 4.046 25 C 0.222 3.778 26 N -0.451 5.451 27 C 0.134 3.866 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.040 0.960 38 H 0.043 0.957 39 H 0.266 0.734 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.091 0.909 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.648 5.149 -2.432 14.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.825 4.825 2 S 2.702 3.298 3 O -0.945 6.945 4 O -0.942 6.942 5 N -0.835 5.835 6 C -0.008 4.008 7 C -0.166 4.166 8 C -0.148 4.148 9 C -0.133 4.133 10 H 0.125 0.875 11 C 0.317 3.683 12 O -0.453 6.453 13 N -0.323 5.323 14 C 0.114 3.886 15 C -0.576 4.576 16 H 0.081 0.919 17 C -0.135 4.135 18 N -0.524 5.524 19 Si 0.719 3.281 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.197 1.197 23 C 0.000 4.000 24 C -0.088 4.088 25 C -0.096 4.096 26 N -0.129 5.129 27 C 0.008 3.992 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.121 0.879 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.109 0.891 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.329 3.530 -2.740 14.058 hybrid contribution -0.030 0.838 1.007 1.310 sum -13.360 4.368 -1.734 14.162 Atomic orbital electron populations 1.30621 1.29391 1.11509 1.10977 1.04912 0.77547 0.74121 0.73254 1.93598 1.77351 1.37893 1.85702 1.93614 1.77222 1.61477 1.61857 1.57628 1.83908 1.14680 1.27234 1.21533 0.98418 0.92953 0.87861 1.21803 0.96491 0.97113 1.01149 1.21528 1.04731 0.93142 0.95397 1.21494 0.98605 0.92697 1.00535 0.87510 1.20341 0.82545 0.88911 0.76534 1.90599 1.39053 1.65995 1.49624 1.48228 1.08949 1.07292 1.67839 1.19585 0.81313 0.90797 0.96928 1.21402 1.12192 1.29654 0.94339 0.91857 1.24898 0.96268 0.96144 0.96176 1.69908 1.20285 1.37689 1.24532 0.86590 0.79304 0.78899 0.83264 1.20614 1.21073 1.19655 1.21115 1.03370 0.81050 0.94419 1.19802 1.05861 0.81370 1.01744 1.29121 0.92518 0.95016 0.92969 1.81176 1.09667 1.13057 1.08967 1.21310 0.97266 0.78552 1.02052 0.85558 0.85802 0.85389 0.91635 0.89166 0.90776 0.90645 0.92406 0.87886 0.94210 0.93889 0.92401 0.89267 0.90223 0.87256 0.87010 0.89073 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -4.50 10.99 101.05 1.11 -3.39 16 2 S 2.61 29.29 6.10 -107.50 -0.66 28.64 16 3 O -0.96 -13.47 16.59 -57.54 -0.95 -14.42 16 4 O -0.95 -14.03 16.59 -57.54 -0.95 -14.99 16 5 N -1.00 -11.71 3.23 -113.50 -0.37 -12.07 16 6 C 0.12 1.28 6.43 -3.70 -0.02 1.25 16 7 C -0.13 -1.69 6.08 -26.62 -0.16 -1.85 16 8 C -0.11 -1.71 5.14 -26.69 -0.14 -1.84 16 9 C -0.11 -1.78 2.10 -91.65 -0.19 -1.97 16 10 H 0.11 1.89 5.89 -51.93 -0.31 1.59 16 11 C 0.53 9.27 6.62 -10.99 -0.07 9.20 16 12 O -0.57 -10.72 15.75 5.56 0.09 -10.63 16 13 N -0.59 -10.43 2.48 -175.06 -0.43 -10.86 16 14 C 0.23 4.78 4.94 -5.19 -0.03 4.75 16 15 C -0.54 -12.28 7.46 -34.44 -0.26 -12.54 16 16 H 0.06 1.47 7.35 -52.48 -0.39 1.09 16 17 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -22.75 13.29 55.43 0.74 -22.01 16 19 Si 0.89 19.17 29.54 -169.99 -5.02 14.15 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 C 0.13 1.90 5.32 -4.04 -0.02 1.88 16 24 C -0.05 -0.58 5.99 -29.52 -0.18 -0.75 16 25 C 0.22 3.11 15.43 -20.76 -0.32 2.79 16 26 N -0.45 -7.40 18.54 42.15 0.78 -6.62 16 27 C 0.13 1.78 5.43 -3.71 -0.02 1.76 16 28 H 0.13 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.12 0.66 8.14 -51.92 -0.42 0.24 16 30 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.90 6.86 -51.93 -0.36 0.54 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.10 1.88 5.56 -51.93 -0.29 1.59 16 37 H 0.04 0.85 8.03 -51.93 -0.42 0.43 16 38 H 0.04 0.93 5.93 -51.93 -0.31 0.63 16 39 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 40 H 0.09 1.34 8.03 -51.93 -0.42 0.92 16 41 H 0.08 1.24 7.52 -51.93 -0.39 0.85 16 42 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.09 1.20 6.86 -51.93 -0.36 0.84 16 45 H 0.08 1.00 7.67 -51.93 -0.40 0.60 16 LS Contribution 382.11 15.07 5.76 5.76 Total: -1.00 -31.45 382.11 -7.98 -39.43 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.56 Total: 2.77 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -0.40 Total: 0.86 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 0.72 Total: -51.56 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -1.82 Total: -40.04 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Atomic # 16 Polarization: 29.29 SS G_CDS: -0.66 Total: 28.64 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.45 -7.98 -39.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058355458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.992 kcal (2) G-P(sol) polarization free energy of solvation -31.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds