Wall clock time and date at job start Tue Mar 31 2020 06:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42102 * 110.54569 * 2 1 4 4 O 1.42098 * 110.54400 * 223.24274 * 2 1 3 5 5 N 1.65605 * 104.44601 * 111.61834 * 2 1 3 6 6 C 1.46959 * 120.65684 * 269.81786 * 5 2 1 7 7 C 1.53181 * 108.89302 * 233.53139 * 6 5 2 8 8 C 1.53039 * 109.31363 * 305.44732 * 7 6 5 9 9 C 1.53039 * 109.54017 * 61.36275 * 8 7 6 10 10 H 1.09006 * 109.52293 * 58.60481 * 9 8 7 11 11 C 1.50703 * 109.49809 * 178.68294 * 9 8 7 12 12 O 1.21280 * 119.99723 * 87.43709 * 11 9 8 13 13 N 1.34773 * 119.99924 * 267.44115 * 11 9 8 14 14 C 1.46498 * 120.00429 * 4.08317 * 13 11 9 15 15 C 1.50701 * 109.46826 * 84.40734 * 14 13 11 16 16 H 1.08005 * 119.99948 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00180 * 180.02562 * 15 14 13 18 18 N 1.31523 * 119.99891 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00312 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47059 * 89.99970 * 19 17 15 21 21 H 1.48504 * 109.47317 * 209.99694 * 19 17 15 22 22 H 1.48495 * 109.47084 * 330.00073 * 19 17 15 23 23 C 1.46503 * 119.99532 * 184.08969 * 13 11 9 24 24 C 1.53002 * 109.47171 * 84.95445 * 23 13 11 25 25 C 1.47201 * 109.46924 * 183.22886 * 24 23 13 26 26 N 9.87455 * 109.54726 * 167.40697 * 2 1 3 27 27 C 1.46924 * 120.62994 * 90.00265 * 5 2 1 28 28 H 1.09001 * 109.47340 * 308.38098 * 1 2 3 29 29 H 1.09009 * 109.46858 * 68.37676 * 1 2 3 30 30 H 1.08994 * 109.47313 * 188.37810 * 1 2 3 31 31 H 1.09007 * 109.46357 * 113.74564 * 6 5 2 32 32 H 1.09006 * 109.59559 * 353.39841 * 6 5 2 33 33 H 1.08997 * 109.49986 * 185.48848 * 7 6 5 34 34 H 1.09001 * 109.49628 * 65.39789 * 7 6 5 35 35 H 1.09000 * 109.46263 * 301.34014 * 8 7 6 36 36 H 1.09005 * 109.46164 * 181.38003 * 8 7 6 37 37 H 1.08998 * 109.47399 * 204.40556 * 14 13 11 38 38 H 1.08996 * 109.46928 * 324.41049 * 14 13 11 39 39 H 0.97000 * 119.99807 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.46488 * 204.95231 * 23 13 11 41 41 H 1.08992 * 109.47083 * 324.94984 * 23 13 11 42 42 H 1.08994 * 109.46757 * 303.22881 * 24 23 13 43 43 H 1.08998 * 109.47034 * 63.23426 * 24 23 13 44 44 H 1.09007 * 109.58622 * 6.60509 * 27 5 2 45 45 H 1.08997 * 109.58794 * 246.32493 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9116 5 7 2.2271 -0.5908 1.4909 6 6 2.4179 0.3175 2.6303 7 6 3.7945 0.0548 3.2488 8 6 3.9163 -1.4295 3.6009 9 6 3.7906 -2.2695 2.3279 10 1 4.5681 -1.9789 1.6214 11 6 3.9430 -3.7290 2.6712 12 8 2.9742 -4.3778 3.0050 13 7 5.1559 -4.3132 2.6075 14 6 6.3399 -3.5104 2.2917 15 6 6.8615 -2.8677 3.5511 16 1 6.3612 -3.0404 4.4926 17 6 7.9773 -2.0594 3.5014 18 7 8.5867 -1.8495 2.3550 19 14 8.6234 -1.2622 5.0623 20 1 9.6115 -2.1644 5.7064 21 1 9.2771 0.0279 4.7253 22 1 7.4952 -1.0164 5.9961 23 6 5.2901 -5.7511 2.8538 24 6 5.0138 -6.5183 1.5592 25 6 5.0725 -7.9651 1.8243 26 7 5.1178 -9.0816 2.0288 27 6 2.4139 -2.0332 1.6990 28 1 -0.3634 0.6381 0.8056 29 1 -0.3633 0.3787 -0.9554 30 1 -0.3633 -1.0166 0.1497 31 1 1.6422 0.1350 3.3741 32 1 2.3624 1.3507 2.2875 33 1 3.9075 0.6537 4.1525 34 1 4.5719 0.3242 2.5339 35 1 3.1236 -1.7039 4.2969 36 1 4.8857 -1.6146 4.0638 37 1 7.1108 -4.1521 1.8651 38 1 6.0727 -2.7362 1.5725 39 1 9.3720 -1.2811 2.3201 40 1 6.3021 -5.9681 3.1958 41 1 4.5751 -6.0572 3.6173 42 1 4.0234 -6.2571 1.1865 43 1 5.7639 -6.2549 0.8136 44 1 2.3558 -2.5511 0.7416 45 1 1.6381 -2.4097 2.3657 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058355458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:56 Heat of formation + Delta-G solvation = -102.653078 kcal Electronic energy + Delta-G solvation = -29349.182845 eV Core-core repulsion = 25300.118507 eV Total energy + Delta-G solvation = -4049.064338 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.20867 -38.85351 -38.16893 -37.82394 -36.92521 -36.72251 -34.71587 -33.61209 -32.57864 -31.72186 -30.20869 -28.95677 -26.17217 -25.43048 -24.94424 -23.84713 -21.70511 -19.77109 -19.69182 -18.78405 -18.62694 -18.28061 -17.82203 -17.31807 -17.04157 -16.82916 -16.24885 -15.86552 -15.78929 -15.44504 -15.29435 -14.85729 -14.68964 -14.45899 -14.31155 -13.96760 -13.88984 -13.81261 -13.76647 -13.58250 -13.50568 -13.30712 -13.10873 -12.99321 -12.90096 -12.88932 -12.69894 -12.62818 -12.32961 -12.05373 -11.94409 -11.78962 -11.73179 -11.65572 -11.60459 -11.22097 -10.63287 -10.39310 -9.81777 -9.46030 -8.12567 -6.22885 -0.65393 1.44686 1.49104 1.55647 1.59987 1.70103 1.78676 1.84995 2.31092 2.48870 3.04907 3.15740 3.20202 3.23963 3.63290 3.83799 3.99998 4.10897 4.13751 4.15916 4.20132 4.30457 4.32781 4.48064 4.55659 4.56024 4.67241 4.87602 4.89494 4.91657 4.95933 4.98859 5.04949 5.06163 5.15840 5.32122 5.39129 5.53590 5.55427 5.67580 5.73479 5.90013 6.15250 6.54777 6.59647 6.90120 7.36361 7.49037 8.93189 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.008250 B = 0.004731 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3393.235352 B = 5916.526100 C = 8286.590779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.603 3.397 3 O -0.993 6.993 4 O -0.998 6.998 5 N -1.000 6.000 6 C 0.118 3.882 7 C -0.128 4.128 8 C -0.105 4.105 9 C -0.114 4.114 10 H 0.081 0.919 11 C 0.528 3.472 12 O -0.580 6.580 13 N -0.595 5.595 14 C 0.248 3.752 15 C -0.528 4.528 16 H 0.058 0.942 17 C 0.027 3.973 18 N -0.920 5.920 19 Si 0.942 3.058 20 H -0.281 1.281 21 H -0.289 1.289 22 H -0.264 1.264 23 C 0.123 3.877 24 C -0.032 4.032 25 C 0.246 3.754 26 N -0.489 5.489 27 C 0.141 3.859 28 H 0.153 0.847 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.032 0.968 38 H 0.029 0.971 39 H 0.264 0.736 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.120 0.880 43 H 0.129 0.871 44 H 0.089 0.911 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.356 5.714 -1.832 17.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.797 4.797 2 S 2.702 3.298 3 O -0.983 6.983 4 O -0.988 6.988 5 N -0.837 5.837 6 C -0.007 4.007 7 C -0.167 4.167 8 C -0.143 4.143 9 C -0.136 4.136 10 H 0.099 0.901 11 C 0.317 3.683 12 O -0.462 6.462 13 N -0.325 5.325 14 C 0.127 3.873 15 C -0.567 4.567 16 H 0.076 0.924 17 C -0.174 4.174 18 N -0.559 5.559 19 Si 0.768 3.232 20 H -0.207 1.207 21 H -0.215 1.215 22 H -0.189 1.189 23 C -0.002 4.002 24 C -0.074 4.074 25 C -0.071 4.071 26 N -0.167 5.167 27 C 0.015 3.985 28 H 0.171 0.829 29 H 0.163 0.837 30 H 0.166 0.834 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.138 0.862 43 H 0.147 0.853 44 H 0.108 0.892 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.996 4.083 -2.122 16.645 hybrid contribution 0.730 0.670 0.821 1.286 sum -15.266 4.753 -1.302 16.042 Atomic orbital electron populations 1.30314 1.22280 1.13724 1.13403 1.04821 0.79954 0.72627 0.72364 1.93548 1.79735 1.39152 1.85892 1.93554 1.79771 1.62339 1.63158 1.57546 1.84837 1.13916 1.27417 1.21649 0.97452 0.93347 0.88229 1.21808 0.97622 0.95798 1.01439 1.21435 1.03238 0.94558 0.95086 1.21523 0.99863 0.91817 1.00440 0.90093 1.20577 0.82214 0.89437 0.76066 1.90586 1.39073 1.66349 1.50171 1.48141 1.08208 1.08143 1.67978 1.19215 0.81962 0.90481 0.95630 1.21589 1.11487 1.28776 0.94835 0.92350 1.25486 0.96816 0.96911 0.98160 1.70001 1.20915 1.38900 1.26109 0.85794 0.78778 0.77844 0.80736 1.20723 1.21454 1.18852 1.21198 1.03351 0.79890 0.95734 1.19728 1.07041 0.79916 1.00665 1.29204 0.91230 0.94918 0.91786 1.81204 1.11127 1.14261 1.10157 1.21194 0.95602 0.79677 1.01986 0.82865 0.83693 0.83443 0.88297 0.88159 0.89066 0.93594 0.91100 0.91178 0.94996 0.95296 0.92684 0.89335 0.90498 0.86186 0.85266 0.89232 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -5.70 10.99 113.37 1.25 -4.45 16 2 S 2.60 55.07 6.10 -56.49 -0.34 54.73 16 3 O -0.99 -27.48 16.59 -127.65 -2.12 -29.59 16 4 O -1.00 -29.47 16.59 -127.65 -2.12 -31.59 16 5 N -1.00 -21.97 3.23 -513.00 -1.66 -23.63 16 6 C 0.12 2.31 6.43 86.35 0.56 2.87 16 7 C -0.13 -3.35 6.08 30.67 0.19 -3.17 16 8 C -0.11 -3.24 5.14 30.62 0.16 -3.08 16 9 C -0.11 -3.67 2.10 -11.46 -0.02 -3.70 16 10 H 0.08 3.03 5.89 -2.38 -0.01 3.01 16 11 C 0.53 18.36 6.62 87.66 0.58 18.94 16 12 O -0.58 -21.00 15.75 -3.03 -0.05 -21.05 16 13 N -0.60 -20.95 2.48 -826.16 -2.05 -23.00 16 14 C 0.25 10.41 4.94 85.63 0.42 10.83 16 15 C -0.53 -24.57 7.46 25.60 0.19 -24.38 16 16 H 0.06 2.74 7.35 -2.91 -0.02 2.72 16 17 C 0.03 1.31 5.46 84.65 0.46 1.77 16 18 N -0.92 -48.41 13.29 21.45 0.28 -48.12 16 19 Si 0.94 39.71 29.54 68.60 2.03 41.74 16 20 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 23 C 0.12 3.64 5.32 86.38 0.46 4.10 16 24 C -0.03 -0.77 5.99 28.79 0.17 -0.59 16 25 C 0.25 6.63 15.43 89.44 1.38 8.01 16 26 N -0.49 -15.71 18.54 20.01 0.37 -15.34 16 27 C 0.14 3.60 5.43 86.36 0.47 4.07 16 28 H 0.15 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.15 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.10 1.80 6.86 -2.38 -0.02 1.79 16 33 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.07 2.61 5.56 -2.38 -0.01 2.60 16 37 H 0.03 1.40 8.03 -2.39 -0.02 1.38 16 38 H 0.03 1.32 5.93 -2.39 -0.01 1.31 16 39 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 40 H 0.09 2.62 8.03 -2.39 -0.02 2.60 16 41 H 0.08 2.34 7.52 -2.39 -0.02 2.32 16 42 H 0.12 2.68 8.14 -2.39 -0.02 2.67 16 43 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 44 H 0.09 2.30 6.86 -2.38 -0.02 2.28 16 45 H 0.09 2.13 7.67 -2.39 -0.02 2.11 16 Total: -1.00 -69.68 382.11 1.61 -68.06 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 1.01 Total: 16.58 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 6.26 Total: 11.22 kcal Atomic # 7 Polarization: -107.05 SS G_CDS: -3.05 Total: -110.10 kcal Atomic # 8 Polarization: -77.95 SS G_CDS: -4.28 Total: -82.23 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Atomic # 16 Polarization: 55.07 SS G_CDS: -0.34 Total: 54.73 kcal Total: -69.68 1.61 -68.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058355458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.588 kcal (2) G-P(sol) polarization free energy of solvation -69.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds