Wall clock time and date at job start Tue Mar 31 2020 05:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50703 * 110.53578 * 2 1 4 4 C 1.38281 * 119.93082 * 266.89311 * 3 2 1 5 5 C 1.38123 * 120.06146 * 179.75994 * 4 3 2 6 6 C 1.38823 * 119.93386 * 0.49665 * 5 4 3 7 7 N 1.40266 * 120.06449 * 179.78411 * 6 5 4 8 8 C 1.35072 * 127.38547 * 359.97438 * 7 6 5 9 9 N 1.30738 * 107.27105 * 180.02562 * 8 7 6 10 10 N 1.28427 * 110.64727 * 359.97438 * 9 8 7 11 11 N 1.28943 * 110.20054 * 359.71117 * 10 9 8 12 12 C 1.38816 * 119.86990 * 359.76010 * 6 5 4 13 13 C 1.38118 * 119.93543 * 0.02562 * 12 6 5 14 14 N 1.47311 * 110.73366 * 122.91750 * 2 1 3 15 15 C 1.34528 * 106.62000 * 118.59057 * 14 2 1 16 16 O 1.21538 * 123.77015 * 179.97438 * 15 14 2 17 17 N 1.33788 * 112.45954 * 359.97438 * 15 14 2 18 18 C 1.46496 * 124.17957 * 180.26516 * 17 15 14 19 19 C 1.50700 * 109.47568 * 269.70301 * 18 17 15 20 20 H 1.08000 * 119.99705 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00226 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00060 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99811 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.46841 * 90.00075 * 23 21 19 25 25 H 1.48500 * 109.46823 * 209.99571 * 23 21 19 26 26 H 1.48493 * 109.47209 * 329.99878 * 23 21 19 27 27 C 1.34774 * 111.64139 * 0.02562 * 17 15 14 28 28 O 1.21236 * 127.15325 * 179.97438 * 27 17 15 29 29 H 1.09003 * 109.47149 * 182.13459 * 1 2 3 30 30 H 1.08999 * 109.47217 * 302.12567 * 1 2 3 31 31 H 1.08992 * 109.47482 * 62.12889 * 1 2 3 32 32 H 1.07995 * 119.96769 * 0.02562 * 4 3 2 33 33 H 1.07999 * 120.03398 * 180.23064 * 5 4 3 34 34 H 1.07992 * 126.36769 * 0.02562 * 8 7 6 35 35 H 1.07999 * 120.02937 * 179.97438 * 12 6 5 36 36 H 1.08007 * 119.96718 * 179.97438 * 13 12 6 37 37 H 0.97005 * 126.69472 * 298.61247 * 14 2 1 38 38 H 1.09001 * 109.46984 * 29.70427 * 18 17 15 39 39 H 1.09004 * 109.47213 * 149.70421 * 18 17 15 40 40 H 0.97000 * 119.99602 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0586 1.4113 0.0000 4 6 2.3614 2.0346 -1.1966 5 6 2.8414 3.3297 -1.2000 6 6 3.0295 4.0020 -0.0001 7 7 3.5211 5.3157 -0.0001 8 6 3.8587 6.0650 -1.0721 9 7 4.2684 7.2224 -0.6231 10 7 4.2124 7.2562 0.6595 11 7 3.7620 6.1372 1.1152 12 6 2.7296 3.3717 1.1998 13 6 2.2457 2.0781 1.1968 14 7 2.0514 -0.7487 1.1565 15 6 2.7646 -1.7757 0.6602 16 8 3.3365 -2.5969 1.3499 17 7 2.7739 -1.7922 -0.6776 18 6 3.4668 -2.8006 -1.4834 19 6 4.8724 -2.3376 -1.7677 20 1 5.2152 -1.3870 -1.3866 21 6 5.7207 -3.1274 -2.5142 22 7 6.9473 -2.7231 -2.7627 23 14 5.1274 -4.7713 -3.1740 24 1 4.5270 -4.5775 -4.5183 25 1 6.2757 -5.7076 -3.2750 26 1 4.1082 -5.3355 -2.2532 27 6 2.0629 -0.7695 -1.1922 28 8 1.8864 -0.5174 -2.3649 29 1 -0.3633 -1.0270 0.0383 30 1 -0.3633 0.5465 0.8703 31 1 -0.3634 0.4804 -0.9084 32 1 2.2185 1.5098 -2.1296 33 1 3.0743 3.8174 -2.1351 34 1 3.8009 5.7639 -2.1076 35 1 2.8753 3.8921 2.1349 36 1 2.0126 1.5870 2.1301 37 1 1.9083 -0.5417 2.0934 38 1 3.4983 -3.7433 -0.9371 39 1 2.9341 -2.9431 -2.4236 40 1 7.5439 -3.2787 -3.2883 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058390465.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:28 Heat of formation + Delta-G solvation = 122.976016 kcal Electronic energy + Delta-G solvation = -29265.077372 eV Core-core repulsion = 25084.531413 eV Total energy + Delta-G solvation = -4180.545959 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.123 amu Computer time = 4.95 seconds Orbital eigenvalues (eV) -43.50459 -42.37417 -39.83127 -38.24069 -36.58330 -35.38609 -34.64249 -32.69800 -32.65610 -31.59467 -31.21577 -29.45213 -28.66273 -25.79839 -24.60444 -24.26122 -23.20873 -22.62090 -22.10287 -21.09362 -19.86702 -19.05954 -17.85126 -17.41813 -16.96691 -16.91130 -16.49724 -16.00243 -15.81502 -15.21539 -15.12490 -14.92398 -14.53402 -14.30033 -14.12858 -13.89518 -13.61491 -13.51110 -13.41726 -13.09966 -12.69243 -12.65101 -12.57197 -12.14904 -12.05228 -11.71173 -11.67574 -11.36750 -11.34968 -10.82527 -10.77207 -10.56523 -10.31313 -9.83576 -9.74202 -9.53772 -9.46622 -8.94043 -8.83454 -8.75166 -6.24577 -4.27302 -0.05955 0.86040 1.21713 1.41073 1.88754 1.95180 2.60002 3.08313 3.19148 3.26340 3.26923 3.38673 3.48453 3.68508 3.89545 3.94298 4.10217 4.25232 4.34604 4.48633 4.61016 4.61693 4.88171 5.01467 5.04328 5.06607 5.14048 5.25514 5.27858 5.50970 5.56421 5.66339 5.74843 5.82245 5.97448 6.03078 6.20702 6.39307 6.49866 6.61144 6.89774 7.31097 7.57778 7.72633 8.06251 8.22678 8.52036 8.74126 9.31268 10.88062 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.013217 B = 0.003216 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.926979 B = 8703.704571 C = 9786.864134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.159 3.841 3 C -0.075 4.075 4 C -0.078 4.078 5 C -0.112 4.112 6 C 0.129 3.871 7 N -0.323 5.323 8 C 0.229 3.771 9 N -0.331 5.331 10 N -0.037 5.037 11 N -0.078 5.078 12 C -0.100 4.100 13 C -0.076 4.076 14 N -0.730 5.730 15 C 0.704 3.296 16 O -0.532 6.532 17 N -0.548 5.548 18 C 0.219 3.781 19 C -0.540 4.540 20 H 0.077 0.923 21 C 0.080 3.920 22 N -0.888 5.888 23 Si 0.874 3.126 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.263 1.263 27 C 0.533 3.467 28 O -0.465 6.465 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.161 0.839 33 H 0.140 0.860 34 H 0.241 0.759 35 H 0.144 0.856 36 H 0.138 0.862 37 H 0.433 0.567 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.194 11.395 4.711 19.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.067 3.933 3 C -0.077 4.077 4 C -0.097 4.097 5 C -0.133 4.133 6 C 0.037 3.963 7 N -0.113 5.113 8 C -0.068 4.068 9 N -0.180 5.180 10 N -0.032 5.032 11 N -0.063 5.063 12 C -0.120 4.120 13 C -0.094 4.094 14 N -0.395 5.395 15 C 0.405 3.595 16 O -0.404 6.404 17 N -0.291 5.291 18 C 0.101 3.899 19 C -0.578 4.578 20 H 0.095 0.905 21 C -0.124 4.124 22 N -0.525 5.525 23 Si 0.700 3.300 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.187 1.187 27 C 0.319 3.681 28 O -0.336 6.336 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.178 0.822 33 H 0.158 0.842 34 H 0.257 0.743 35 H 0.162 0.838 36 H 0.156 0.844 37 H 0.277 0.723 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.380 11.925 5.276 19.412 hybrid contribution -0.224 -1.480 -0.551 1.595 sum -14.604 10.446 4.725 18.566 Atomic orbital electron populations 1.21987 0.89393 1.04086 1.04420 1.20174 0.96877 0.89590 0.86647 1.19663 0.99950 0.93914 0.94167 1.21401 0.95206 0.93427 0.99629 1.20869 1.01276 0.95338 0.95831 1.17648 1.02194 0.80277 0.96188 1.49095 1.43866 1.12276 1.06085 1.27505 0.94783 0.87468 0.97041 1.74502 1.21576 1.18655 1.03292 1.78080 1.09471 1.12646 1.02996 1.82650 1.18586 0.97531 1.07497 1.20865 0.99329 0.95054 0.96799 1.20754 0.97683 0.93175 0.97833 1.45653 1.56275 1.29442 1.08162 1.15889 0.79191 0.82025 0.82381 1.90988 1.47062 1.41207 1.61125 1.46452 1.46958 1.28424 1.07295 1.19999 0.93392 0.86353 0.90182 1.21071 0.94281 1.07459 1.35022 0.90527 1.24777 0.94577 0.97924 0.95159 1.69871 1.05966 1.38091 1.38554 0.86877 0.79169 0.83911 0.80044 1.19624 1.20558 1.18723 1.20301 0.77854 0.80844 0.89134 1.90702 1.57808 1.68662 1.16400 0.90682 0.90333 0.89632 0.82170 0.84178 0.74308 0.83793 0.84449 0.72284 0.92882 0.93521 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.97 37.15 0.33 -0.79 16 2 C 0.16 1.84 1.16 -133.25 -0.15 1.69 16 3 C -0.07 -0.80 4.89 -104.59 -0.51 -1.31 16 4 C -0.08 -0.85 9.17 -39.61 -0.36 -1.21 16 5 C -0.11 -1.01 9.49 -39.41 -0.37 -1.39 16 6 C 0.13 1.27 6.70 -83.57 -0.56 0.71 16 7 N -0.32 -3.40 3.85 -11.74 -0.05 -3.44 16 8 C 0.23 2.03 12.16 -90.15 -1.10 0.94 16 9 N -0.33 -3.97 12.15 29.64 0.36 -3.61 16 10 N -0.04 -0.50 13.39 60.35 0.81 0.31 16 11 N -0.08 -0.98 13.34 60.35 0.80 -0.18 16 12 C -0.10 -0.93 9.70 -39.41 -0.38 -1.32 16 13 C -0.08 -0.66 9.34 -39.61 -0.37 -1.03 16 14 N -0.73 -8.94 5.37 -54.03 -0.29 -9.23 16 15 C 0.70 12.90 8.62 -88.02 -0.76 12.14 16 16 O -0.53 -11.72 17.48 5.33 0.09 -11.62 16 17 N -0.55 -10.84 2.59 -122.02 -0.32 -11.16 16 18 C 0.22 5.11 4.52 -5.20 -0.02 5.09 16 19 C -0.54 -14.95 9.94 -34.44 -0.34 -15.30 16 20 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 21 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 22 N -0.89 -26.40 13.96 55.43 0.77 -25.63 16 23 Si 0.87 20.43 27.47 -169.99 -4.67 15.76 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 27 C 0.53 8.90 6.45 -10.55 -0.07 8.83 16 28 O -0.47 -8.43 15.61 5.60 0.09 -8.35 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.16 1.95 5.60 -52.49 -0.29 1.66 16 33 H 0.14 0.84 6.88 -52.49 -0.36 0.48 16 34 H 0.24 0.88 7.19 -52.49 -0.38 0.50 16 35 H 0.14 1.23 7.77 -52.49 -0.41 0.82 16 36 H 0.14 0.86 7.10 -52.48 -0.37 0.49 16 37 H 0.43 3.79 8.18 -40.82 -0.33 3.45 16 38 H 0.05 1.26 6.91 -51.93 -0.36 0.90 16 39 H 0.05 1.05 7.43 -51.93 -0.39 0.67 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 350.41 15.07 5.28 5.28 Total: -1.00 -36.01 350.41 -5.63 -41.64 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -3.75 Total: 1.05 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: -4.77 Total: 9.18 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 2.10 Total: -52.94 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: 0.18 Total: -19.97 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.67 Total: 15.76 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.01 -5.63 -41.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058390465.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.614 kcal (2) G-P(sol) polarization free energy of solvation -36.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.95 seconds