Wall clock time and date at job start Tue Mar 31 2020 05:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 110.65541 * 2 1 4 4 C 1.38278 * 119.93376 * 88.26710 * 3 2 1 5 5 C 1.38124 * 120.06219 * 179.72756 * 4 3 2 6 6 C 1.38821 * 119.93838 * 0.52311 * 5 4 3 7 7 N 1.40259 * 120.06629 * 179.72830 * 6 5 4 8 8 C 1.35065 * 127.39244 * 359.72710 * 7 6 5 9 9 N 1.30733 * 107.27458 * 179.89792 * 8 7 6 10 10 N 1.28420 * 110.64752 * 0.38753 * 9 8 7 11 11 N 1.28942 * 110.20356 * 359.75581 * 10 9 8 12 12 C 1.38818 * 119.86632 * 359.74955 * 6 5 4 13 13 C 1.38125 * 119.93899 * 0.02562 * 12 6 5 14 14 N 1.47316 * 110.59993 * 237.08668 * 2 1 3 15 15 C 1.34524 * 106.61733 * 241.47382 * 14 2 1 16 16 O 1.21545 * 123.76626 * 180.02562 * 15 14 2 17 17 N 1.33786 * 112.46391 * 359.97438 * 15 14 2 18 18 C 1.46496 * 124.18215 * 180.02562 * 17 15 14 19 19 C 1.50694 * 109.47287 * 89.97583 * 18 17 15 20 20 H 1.07997 * 120.00003 * 0.02562 * 19 18 17 21 21 C 1.37873 * 120.00268 * 180.02562 * 19 18 17 22 22 N 1.31524 * 119.99864 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00290 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47065 * 90.00099 * 23 21 19 25 25 H 1.48501 * 109.47423 * 209.99928 * 23 21 19 26 26 H 1.48494 * 109.47238 * 330.00231 * 23 21 19 27 27 C 1.34778 * 111.64065 * 0.02562 * 17 15 14 28 28 O 1.21234 * 127.15287 * 180.02562 * 27 17 15 29 29 H 1.08999 * 109.46556 * 182.21113 * 1 2 3 30 30 H 1.08994 * 109.47249 * 302.20954 * 1 2 3 31 31 H 1.08993 * 109.47221 * 62.21367 * 1 2 3 32 32 H 1.07998 * 119.96863 * 0.02562 * 4 3 2 33 33 H 1.08007 * 120.03492 * 180.29656 * 5 4 3 34 34 H 1.08003 * 126.35926 * 0.02562 * 8 7 6 35 35 H 1.08002 * 120.03090 * 179.97438 * 12 6 5 36 36 H 1.07994 * 119.97065 * 179.97438 * 13 12 6 37 37 H 0.97004 * 126.68789 * 61.43450 * 14 2 1 38 38 H 1.08997 * 109.47120 * 209.97744 * 18 17 15 39 39 H 1.09004 * 109.47031 * 329.97169 * 18 17 15 40 40 H 0.96993 * 119.99865 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0616 1.4101 0.0000 4 6 2.2711 2.0685 1.1978 5 6 2.7636 3.3590 1.2010 6 6 3.0380 3.9989 0.0001 7 7 3.5327 5.3113 0.0001 8 6 3.7913 6.0903 1.0727 9 7 4.2393 7.2334 0.6234 10 7 4.2740 7.2330 -0.6603 11 7 3.8601 6.1004 -1.1167 12 6 2.8213 3.3373 -1.2010 13 6 2.3331 2.0452 -1.1979 14 7 2.0484 -0.7493 -1.1576 15 6 2.7600 -1.7780 -0.6627 16 8 3.3292 -2.6001 -1.3537 17 7 2.7721 -1.7946 0.6750 18 6 3.4691 -2.8012 1.4794 19 6 4.8766 -2.3380 1.7542 20 1 5.2176 -1.3886 1.3686 21 6 5.7289 -3.1263 2.4978 22 7 5.3138 -4.2827 2.9670 23 14 7.4738 -2.5526 2.8378 24 1 7.5000 -1.7679 4.0984 25 1 8.3658 -3.7323 2.9705 26 1 7.9426 -1.7013 1.7151 27 6 2.0637 -0.7708 1.1912 28 8 1.8901 -0.5184 2.3642 29 1 -0.3632 -1.0269 0.0397 30 1 -0.3633 0.5477 0.8695 31 1 -0.3633 0.4790 -0.9091 32 1 2.0540 1.5716 2.1317 33 1 2.9316 3.8712 2.1370 34 1 3.6554 5.8186 2.1091 35 1 3.0335 3.8327 -2.1369 36 1 2.1640 1.5302 -2.1320 37 1 1.9041 -0.5416 -2.0941 38 1 2.9419 -2.9409 2.4230 39 1 3.4969 -3.7454 0.9355 40 1 5.9133 -4.8371 3.4905 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058390467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:38 Heat of formation + Delta-G solvation = 117.658740 kcal Electronic energy + Delta-G solvation = -29259.983977 eV Core-core repulsion = 25079.207444 eV Total energy + Delta-G solvation = -4180.776533 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.123 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -43.53866 -42.28625 -39.82932 -38.14559 -36.53482 -35.32484 -34.58043 -32.73108 -32.70773 -31.62190 -31.13746 -29.44289 -28.00364 -25.78957 -24.59075 -24.28868 -23.39708 -22.60069 -22.15138 -21.10433 -19.87602 -19.07947 -17.77263 -17.23198 -16.94966 -16.82151 -16.48379 -15.83099 -15.72555 -15.21969 -15.08762 -14.87989 -14.49914 -14.25999 -14.11225 -13.90152 -13.62202 -13.51188 -13.42839 -13.12029 -12.65938 -12.64636 -12.39778 -12.09509 -11.69970 -11.68499 -11.61652 -11.38091 -11.20331 -10.85990 -10.84271 -10.53983 -10.16301 -10.03062 -9.73504 -9.53578 -9.43508 -8.94249 -8.73529 -8.60417 -6.23373 -4.29153 -0.08442 0.83888 1.19536 1.38073 1.91213 1.97766 2.70614 3.09806 3.22489 3.28699 3.32464 3.44590 3.57653 3.65349 3.86221 3.98927 4.14873 4.31092 4.33783 4.46133 4.59293 4.65000 4.87844 4.98447 5.02738 5.12486 5.13082 5.29161 5.31001 5.50736 5.57852 5.71078 5.78434 5.80823 5.95479 6.03697 6.36465 6.41576 6.88115 6.96045 7.09390 7.68225 7.76208 7.85834 7.91866 8.03035 8.56413 8.73736 9.36335 10.85988 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.010888 B = 0.003498 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.114353 B = 8002.180379 C = 9489.389513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.157 3.843 3 C -0.073 4.073 4 C -0.078 4.078 5 C -0.113 4.113 6 C 0.127 3.873 7 N -0.323 5.323 8 C 0.228 3.772 9 N -0.331 5.331 10 N -0.037 5.037 11 N -0.077 5.077 12 C -0.100 4.100 13 C -0.076 4.076 14 N -0.732 5.732 15 C 0.702 3.298 16 O -0.533 6.533 17 N -0.552 5.552 18 C 0.248 3.752 19 C -0.536 4.536 20 H 0.059 0.941 21 C 0.067 3.933 22 N -0.889 5.889 23 Si 0.903 3.097 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.273 1.273 27 C 0.532 3.468 28 O -0.467 6.467 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.161 0.839 33 H 0.140 0.860 34 H 0.241 0.759 35 H 0.144 0.856 36 H 0.138 0.862 37 H 0.432 0.568 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.573 14.819 -5.022 19.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.065 3.935 3 C -0.075 4.075 4 C -0.097 4.097 5 C -0.134 4.134 6 C 0.035 3.965 7 N -0.113 5.113 8 C -0.069 4.069 9 N -0.180 5.180 10 N -0.032 5.032 11 N -0.062 5.062 12 C -0.120 4.120 13 C -0.095 4.095 14 N -0.398 5.398 15 C 0.403 3.597 16 O -0.405 6.405 17 N -0.295 5.295 18 C 0.131 3.869 19 C -0.575 4.575 20 H 0.078 0.922 21 C -0.136 4.136 22 N -0.527 5.527 23 Si 0.730 3.270 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.198 1.198 27 C 0.317 3.683 28 O -0.338 6.338 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.178 0.822 33 H 0.158 0.842 34 H 0.257 0.743 35 H 0.162 0.838 36 H 0.156 0.844 37 H 0.275 0.725 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.801 15.192 -5.571 19.455 hybrid contribution 0.753 -0.433 0.377 0.947 sum -10.048 14.759 -5.194 18.595 Atomic orbital electron populations 1.21971 0.89472 1.04158 1.04196 1.20200 0.96853 0.89522 0.86940 1.19713 0.99676 0.94007 0.94085 1.21349 0.95695 0.93102 0.99528 1.20862 1.01098 0.95723 0.95741 1.17644 1.02308 0.80367 0.96183 1.49097 1.43833 1.12363 1.05989 1.27493 0.95323 0.87047 0.97032 1.74496 1.20759 1.19498 1.03281 1.78081 1.10315 1.11839 1.02973 1.82659 1.17747 0.98376 1.07455 1.20876 0.99534 0.94793 0.96805 1.20786 0.97375 0.93341 0.97995 1.45689 1.56571 1.29471 1.08070 1.15963 0.79193 0.81918 0.82627 1.90984 1.47287 1.41103 1.61138 1.46828 1.46846 1.28589 1.07249 1.19660 0.91808 0.85326 0.90069 1.21207 0.96166 1.05637 1.34459 0.92234 1.24882 0.99052 0.94610 0.95067 1.69914 1.36658 1.10971 1.35165 0.86410 0.83440 0.78404 0.78737 1.20327 1.20786 1.19793 1.20275 0.77986 0.81026 0.89003 1.90699 1.57824 1.68912 1.16340 0.90675 0.89735 0.90436 0.82202 0.84226 0.74337 0.83821 0.84428 0.72451 0.92807 0.92652 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.97 37.16 0.33 -0.85 16 2 C 0.16 1.86 1.16 -133.24 -0.15 1.70 16 3 C -0.07 -0.77 4.88 -104.59 -0.51 -1.28 16 4 C -0.08 -0.81 9.17 -39.61 -0.36 -1.18 16 5 C -0.11 -0.97 9.49 -39.41 -0.37 -1.34 16 6 C 0.13 1.20 6.70 -83.57 -0.56 0.64 16 7 N -0.32 -3.28 3.85 -11.74 -0.05 -3.33 16 8 C 0.23 1.93 12.16 -90.16 -1.10 0.83 16 9 N -0.33 -3.86 12.15 29.64 0.36 -3.50 16 10 N -0.04 -0.49 13.39 60.35 0.81 0.32 16 11 N -0.08 -0.96 13.34 60.35 0.80 -0.15 16 12 C -0.10 -0.91 9.70 -39.41 -0.38 -1.30 16 13 C -0.08 -0.67 9.34 -39.61 -0.37 -1.04 16 14 N -0.73 -9.18 5.29 -54.02 -0.29 -9.47 16 15 C 0.70 13.19 8.62 -88.03 -0.76 12.43 16 16 O -0.53 -12.05 17.48 5.33 0.09 -11.95 16 17 N -0.55 -11.27 2.59 -122.03 -0.32 -11.59 16 18 C 0.25 6.22 5.45 -5.20 -0.03 6.19 16 19 C -0.54 -14.70 9.39 -34.44 -0.32 -15.02 16 20 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 21 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 22 N -0.89 -25.34 13.29 55.43 0.74 -24.60 16 23 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 27 C 0.53 9.13 6.53 -10.55 -0.07 9.06 16 28 O -0.47 -8.73 15.68 5.60 0.09 -8.65 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.16 1.84 5.79 -52.49 -0.30 1.54 16 33 H 0.14 0.75 6.88 -52.48 -0.36 0.39 16 34 H 0.24 0.76 7.19 -52.48 -0.38 0.39 16 35 H 0.14 1.21 7.77 -52.49 -0.41 0.81 16 36 H 0.14 0.90 6.94 -52.49 -0.36 0.53 16 37 H 0.43 3.89 8.09 -40.82 -0.33 3.56 16 38 H 0.05 1.40 8.00 -51.93 -0.42 0.98 16 39 H 0.06 1.49 7.86 -51.93 -0.41 1.08 16 40 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 354.01 15.07 5.33 5.33 Total: -1.00 -35.05 354.01 -5.98 -41.03 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -3.78 Total: -0.29 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: -4.75 Total: 10.61 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: 2.06 Total: -52.32 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: 0.18 Total: -20.60 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.05 -5.98 -41.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058390467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.689 kcal (2) G-P(sol) polarization free energy of solvation -35.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds