Wall clock time and date at job start Tue Mar 31 2020 06:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38105 * 120.03611 * 2 1 4 4 C 1.38347 * 120.07259 * 179.97438 * 3 2 1 5 5 Br 1.89105 * 119.93160 * 179.97438 * 4 3 2 6 6 C 1.38408 * 120.13882 * 359.67872 * 4 3 2 7 7 C 1.38056 * 120.06719 * 0.60106 * 6 4 3 8 8 C 1.38943 * 120.03573 * 179.97438 * 2 1 3 9 9 S 1.76204 * 120.07030 * 0.02562 * 8 2 1 10 10 C 1.81396 * 102.99978 * 180.02562 * 9 8 2 11 11 C 1.50699 * 109.46890 * 179.97438 * 10 9 8 12 12 O 1.21286 * 120.00489 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99889 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99990 * 0.02562 * 13 11 10 15 15 C 1.37094 * 120.00282 * 180.02562 * 13 11 10 16 16 H 1.08006 * 120.00011 * 24.38973 * 15 13 11 17 17 C 1.38950 * 120.00177 * 204.38767 * 15 13 11 18 18 N 1.31411 * 120.00131 * 12.64897 * 17 15 13 19 19 Si 1.86799 * 119.99954 * 192.64389 * 17 15 13 20 20 H 1.48500 * 109.47139 * 60.00396 * 19 17 15 21 21 H 1.48498 * 109.47284 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47282 * 300.00590 * 19 17 15 23 23 H 1.09003 * 109.47492 * 270.02653 * 1 2 3 24 24 H 1.09001 * 109.47566 * 30.02593 * 1 2 3 25 25 H 1.09002 * 109.47272 * 150.02461 * 1 2 3 26 26 H 1.08004 * 119.96164 * 359.97077 * 3 2 1 27 27 H 1.07999 * 119.96026 * 180.29691 * 6 4 3 28 28 H 1.08000 * 120.03530 * 179.70105 * 7 6 4 29 29 H 1.08994 * 109.47742 * 300.00222 * 10 9 8 30 30 H 1.09005 * 109.46917 * 60.00114 * 10 9 8 31 31 H 1.08994 * 109.47047 * 85.87008 * 14 13 11 32 32 H 1.09003 * 109.47132 * 205.87226 * 14 13 11 33 33 H 1.09003 * 109.46964 * 325.87117 * 14 13 11 34 34 H 0.96997 * 120.00007 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1956 0.0000 4 6 3.5817 1.1965 0.0005 5 35 4.5242 2.8359 -0.0002 6 6 4.2774 0.0000 0.0078 7 6 3.5923 -1.1986 0.0020 8 6 2.2024 -1.2028 0.0005 9 16 1.3242 -2.7304 0.0005 10 6 2.6532 -3.9651 0.0021 11 6 2.0541 -5.3479 0.0029 12 8 0.8492 -5.4869 0.0020 13 7 2.8572 -6.4303 0.0046 14 6 4.3126 -6.2625 0.0063 15 6 2.3123 -7.6882 0.0048 16 1 1.3164 -7.8454 -0.3825 17 6 3.0412 -8.7611 0.5033 18 7 4.1371 -8.5458 1.1957 19 14 2.4631 -10.5094 0.1894 20 1 2.4127 -10.7589 -1.2736 21 1 3.4077 -11.4644 0.8225 22 1 1.1090 -10.6948 0.7700 23 1 -0.3634 0.0005 1.0277 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3634 -0.8902 -0.5135 26 1 1.6582 2.1309 -0.0005 27 1 5.3574 0.0040 0.0130 28 1 4.1357 -2.1319 0.0028 29 1 3.2698 -3.8364 -0.8873 30 1 3.2684 -3.8355 0.8926 31 1 4.6638 -6.1466 1.0316 32 1 4.7800 -7.1398 -0.4409 33 1 4.5768 -5.3761 -0.5705 34 1 4.6461 -9.2947 1.5434 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058434733.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:05 Heat of formation + Delta-G solvation = -3.072783 kcal Electronic energy + Delta-G solvation = -18739.155195 eV Core-core repulsion = 15616.731522 eV Total energy + Delta-G solvation = -3122.423673 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 342.998 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.37450 -38.51785 -34.83042 -33.31612 -32.36898 -31.80579 -29.74829 -29.15230 -27.12140 -26.26583 -24.35029 -22.76446 -21.65864 -19.37956 -17.53700 -17.00588 -16.29099 -15.90004 -15.56338 -15.04775 -14.69523 -14.56930 -14.12703 -13.95619 -13.43564 -13.15395 -12.82362 -12.62325 -12.46928 -12.28594 -11.74091 -11.69248 -11.48784 -11.39988 -11.27199 -11.08066 -10.93809 -10.48328 -10.45387 -10.38817 -9.85058 -9.41876 -9.11424 -8.99675 -8.66055 -7.81552 -7.22990 -6.44392 -4.01314 0.86017 1.13251 1.43716 1.62263 2.62607 3.12150 3.19217 3.23020 3.36685 3.67639 4.04479 4.54926 4.65311 4.68702 4.98137 5.00649 5.14512 5.25950 5.39813 5.45009 5.49240 5.57962 5.64863 5.71051 5.90012 6.01881 6.04212 6.17023 6.24449 6.58498 6.69247 7.04679 7.46108 7.97232 8.32844 9.03033 9.25037 9.78424 10.60549 Molecular weight = 343.00amu Principal moments of inertia in cm(-1) A = 0.027752 B = 0.002385 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.698517 B =11739.677263 C =12669.437980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.067 4.067 3 C -0.074 4.074 4 C -0.103 4.103 5 Br -0.061 7.061 6 C -0.075 4.075 7 C -0.131 4.131 8 C -0.085 4.085 9 S -0.012 6.012 10 C -0.140 4.140 11 C 0.459 3.541 12 O -0.572 6.572 13 N -0.436 5.436 14 C 0.108 3.892 15 C -0.309 4.309 16 H 0.100 0.900 17 C 0.033 3.967 18 N -0.880 5.880 19 Si 0.930 3.070 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.271 1.271 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.133 0.867 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.025 0.975 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.113 21.139 -2.286 21.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.074 4.074 3 C -0.095 4.095 4 C -0.185 4.185 5 Br 0.025 6.975 6 C -0.096 4.096 7 C -0.156 4.156 8 C -0.199 4.199 9 S 0.235 5.765 10 C -0.291 4.291 11 C 0.245 3.755 12 O -0.457 6.457 13 N -0.154 5.154 14 C -0.036 4.036 15 C -0.437 4.437 16 H 0.118 0.882 17 C -0.171 4.171 18 N -0.518 5.518 19 Si 0.756 3.244 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.196 1.196 23 H 0.096 0.904 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.151 0.849 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.043 0.957 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.821 21.133 -2.190 21.324 hybrid contribution 1.500 -0.983 0.014 1.794 sum 3.322 20.150 -2.176 20.538 Atomic orbital electron populations 1.20819 0.90049 1.03363 1.03159 1.19481 0.96364 0.90551 1.01039 1.20870 0.91875 0.97999 0.98802 1.21633 0.94617 0.91361 1.10927 1.96675 1.75579 1.27407 1.97880 1.20960 1.00028 0.90554 0.98086 1.21245 0.92730 0.98572 1.03049 1.22420 0.96792 0.99159 1.01578 1.86186 1.09635 0.91210 1.89433 1.23969 1.01272 0.97767 1.06103 1.19066 0.87304 0.83992 0.85163 1.90563 1.13980 1.85483 1.55673 1.43473 1.05072 1.04785 1.62097 1.21554 0.81755 0.99475 1.00788 1.19633 1.02800 0.81813 1.39419 0.88215 1.25384 0.96301 1.00579 0.94844 1.69973 1.16656 1.32500 1.32700 0.85941 0.78700 0.80966 0.78799 1.19778 1.20850 1.19628 0.90380 0.91077 0.90327 0.84870 0.84972 0.84882 0.88092 0.87857 0.92695 0.90308 0.95663 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.57 36.00 0.34 -0.89 16 2 C -0.07 -0.82 5.90 -104.41 -0.62 -1.44 16 3 C -0.07 -0.82 9.43 -39.59 -0.37 -1.19 16 4 C -0.10 -1.16 6.23 -39.48 -0.25 -1.41 16 5 Br -0.06 -0.60 33.70 -68.01 -2.29 -2.89 16 6 C -0.07 -0.86 9.78 -39.59 -0.39 -1.24 16 7 C -0.13 -1.66 9.36 -39.37 -0.37 -2.03 16 8 C -0.09 -1.19 6.11 -39.04 -0.24 -1.43 16 9 S -0.01 -0.21 19.27 -107.50 -2.07 -2.28 16 10 C -0.14 -2.47 3.42 36.01 0.12 -2.35 16 11 C 0.46 10.84 7.65 -10.98 -0.08 10.76 16 12 O -0.57 -15.51 15.58 5.55 0.09 -15.42 16 13 N -0.44 -10.80 3.01 -122.19 -0.37 -11.17 16 14 C 0.11 2.28 8.44 59.85 0.51 2.79 16 15 C -0.31 -8.39 9.24 -14.93 -0.14 -8.53 16 16 H 0.10 2.83 7.45 -52.48 -0.39 2.44 16 17 C 0.03 0.84 5.04 -17.47 -0.09 0.76 16 18 N -0.88 -22.75 10.83 55.50 0.60 -22.15 16 19 Si 0.93 20.22 29.57 -169.99 -5.03 15.20 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 23 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 25 H 0.08 0.92 6.78 -51.93 -0.35 0.57 16 26 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 27 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 28 H 0.13 1.57 5.88 -52.49 -0.31 1.27 16 29 H 0.10 1.56 7.02 -51.93 -0.36 1.19 16 30 H 0.10 1.67 7.71 -51.92 -0.40 1.27 16 31 H 0.05 1.18 7.83 -51.93 -0.41 0.78 16 32 H 0.08 1.77 6.80 -51.93 -0.35 1.41 16 33 H 0.02 0.43 6.61 -51.93 -0.34 0.08 16 34 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 320.18 15.07 4.83 4.83 Total: -1.00 -29.69 320.18 -9.55 -39.24 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -3.74 Total: 0.84 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -1.57 Total: -6.19 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.23 Total: -33.32 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: 0.09 Total: -15.42 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.20 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -2.07 Total: -2.28 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -2.29 Total: -2.89 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.69 -9.55 -39.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058434733.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.167 kcal (2) G-P(sol) polarization free energy of solvation -29.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds