Wall clock time and date at job start Tue Mar 31 2020 07:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.20223 * 2 1 4 4 C 1.50623 * 109.24077 * 119.40934 * 2 1 3 5 5 C 1.38664 * 118.45397 * 317.96322 * 4 2 1 6 6 C 1.38495 * 120.55432 * 180.62009 * 5 4 2 7 7 C 1.39046 * 119.62446 * 359.78707 * 6 5 4 8 8 C 1.38521 * 119.61414 * 0.13949 * 7 6 5 9 9 C 1.37949 * 121.74997 * 138.30604 * 4 2 1 10 10 C 1.50486 * 121.41204 * 359.25765 * 9 4 2 11 11 C 1.54038 * 109.66905 * 255.66156 * 10 9 4 12 12 C 1.54947 * 104.11397 * 217.30797 * 11 10 9 13 13 C 1.54907 * 102.77827 * 37.77790 * 12 11 10 14 14 C 1.53607 * 109.97091 * 138.43743 * 10 9 4 15 15 C 1.52641 * 110.60316 * 16.76654 * 10 9 4 16 16 N 1.46585 * 109.23622 * 240.60174 * 2 1 3 17 17 C 1.46897 * 111.00027 * 63.55395 * 16 2 1 18 18 C 1.50703 * 109.47351 * 197.99079 * 17 16 2 19 19 H 1.08003 * 119.99698 * 4.55274 * 18 17 16 20 20 C 1.37874 * 120.00475 * 184.55349 * 18 17 16 21 21 N 1.31515 * 120.00001 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 119.99776 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47151 * 89.99953 * 22 20 18 24 24 H 1.48499 * 109.46547 * 209.99971 * 22 20 18 25 25 H 1.48501 * 109.46847 * 329.99971 * 22 20 18 26 26 O 1.35578 * 120.66653 * 180.47090 * 7 6 5 27 27 C 1.41904 * 119.24013 * 346.08272 * 26 7 6 28 28 C 1.52087 * 111.72737 * 36.38695 * 27 26 7 29 29 O 1.35578 * 119.70540 * 179.44792 * 6 5 4 30 30 H 1.09006 * 109.46765 * 294.99713 * 1 2 3 31 31 H 1.09000 * 109.47238 * 54.99804 * 1 2 3 32 32 H 1.08997 * 109.46883 * 175.00404 * 1 2 3 33 33 H 1.08001 * 119.72279 * 0.59829 * 5 4 2 34 34 H 1.07999 * 119.74632 * 179.86742 * 8 7 6 35 35 H 1.08997 * 110.50673 * 335.96500 * 11 10 9 36 36 H 1.08995 * 110.50537 * 98.65289 * 11 10 9 37 37 H 1.09004 * 110.74964 * 279.45617 * 12 11 10 38 38 H 1.09000 * 110.91241 * 156.17085 * 12 11 10 39 39 H 1.08999 * 110.48688 * 203.51557 * 13 12 11 40 40 H 1.08999 * 110.48789 * 80.87233 * 13 12 11 41 41 H 1.09004 * 110.04464 * 238.23792 * 14 10 9 42 42 H 1.08997 * 110.05014 * 359.71377 * 14 10 9 43 43 H 1.08995 * 109.64122 * 69.84357 * 15 10 9 44 44 H 1.08996 * 109.64201 * 190.46393 * 15 10 9 45 45 H 1.09001 * 109.47340 * 317.98528 * 17 16 2 46 46 H 1.08993 * 109.47681 * 77.98669 * 17 16 2 47 47 H 0.97006 * 119.99865 * 180.02562 * 21 20 18 48 48 H 1.08998 * 109.02547 * 156.96953 * 27 26 7 49 49 H 1.09002 * 109.02286 * 275.80795 * 27 26 7 50 50 H 1.09002 * 109.02826 * 74.11548 * 28 27 26 51 51 H 1.08997 * 109.02977 * 192.96110 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8885 1.0294 0.0000 4 6 2.0263 -0.6983 1.2388 5 6 1.3892 -0.4400 2.4430 6 6 1.8178 -1.0483 3.6110 7 6 2.8934 -1.9286 3.5728 8 6 3.5259 -2.1847 2.3673 9 6 3.0925 -1.5728 1.2013 10 6 3.8048 -1.8863 -0.0867 11 6 3.3876 -3.2835 -0.5832 12 6 4.6878 -3.8749 -1.1838 13 6 5.7788 -3.3617 -0.2113 14 6 5.3218 -1.9326 0.1505 15 6 3.4749 -0.8427 -1.1507 16 7 2.0129 -0.6794 -1.2058 17 6 1.6097 0.0476 -2.4169 18 6 1.7201 -0.8652 -3.6109 19 1 1.9851 -1.9032 -3.4744 20 6 1.4829 -0.3751 -4.8776 21 7 1.5798 -1.1716 -5.9197 22 14 1.0239 1.4202 -5.1137 23 1 2.2571 2.2257 -5.3024 24 1 0.1560 1.5558 -6.3111 25 1 0.2938 1.9061 -3.9154 26 8 3.3245 -2.5431 4.7018 27 6 2.8774 -2.0697 5.9626 28 6 1.4313 -1.6020 5.9079 29 8 1.1893 -0.7747 4.7808 30 1 -0.3633 0.4343 0.9315 31 1 -0.3634 0.5895 -0.8418 32 1 -0.3633 -1.0237 -0.0895 33 1 0.5518 0.2416 2.4703 34 1 4.3629 -2.8663 2.3355 35 1 3.0384 -3.8956 0.2483 36 1 2.6161 -3.2020 -1.3488 37 1 4.8569 -3.4924 -2.1905 38 1 4.6545 -4.9644 -1.1867 39 1 6.7499 -3.3379 -0.7056 40 1 5.8191 -3.9866 0.6809 41 1 5.8225 -1.2067 -0.4903 42 1 5.5429 -1.7231 1.1970 43 1 3.9400 0.1075 -0.8886 44 1 3.8427 -1.1789 -2.1201 45 1 0.5786 0.3851 -2.3118 46 1 2.2616 0.9098 -2.5572 47 1 1.4132 -0.8268 -6.8109 48 1 2.9639 -2.8726 6.6947 49 1 3.5087 -1.2373 6.2738 50 1 0.7778 -2.4729 5.8564 51 1 1.2042 -1.0421 6.8151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058571529.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:35 Heat of formation + Delta-G solvation = -42.403498 kcal Electronic energy + Delta-G solvation = -31882.136420 eV Core-core repulsion = 27939.614187 eV Total energy + Delta-G solvation = -3942.522233 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.45022 -40.07202 -37.49649 -37.05979 -36.37276 -32.81669 -32.01457 -31.58129 -29.74787 -29.52460 -28.35934 -27.42704 -26.84966 -24.97802 -23.40200 -23.32449 -21.91564 -20.82890 -20.31125 -19.63528 -18.72044 -18.34460 -17.40082 -17.01984 -16.60850 -15.66270 -15.42936 -15.21666 -14.96461 -14.75260 -14.39489 -14.29257 -14.18703 -13.86256 -13.80445 -13.39615 -13.11750 -12.97550 -12.77116 -12.42613 -12.25796 -12.18200 -11.88257 -11.57850 -11.28397 -11.13418 -11.04566 -10.90200 -10.83173 -10.72186 -10.69460 -10.57195 -10.53514 -10.20160 -10.17848 -9.99173 -9.81429 -9.66549 -9.27014 -8.54476 -8.39366 -7.76590 -7.36942 -6.03228 -3.99509 1.41413 1.44318 2.81716 3.12000 3.28384 3.36779 3.38104 3.75830 4.02640 4.43039 4.48462 4.59795 4.67407 4.71202 4.82385 4.91605 5.00035 5.09396 5.15363 5.20631 5.28983 5.36061 5.43576 5.46007 5.61775 5.67860 5.74906 5.78739 5.83997 5.90962 5.97318 6.01311 6.08123 6.15149 6.20056 6.20647 6.27118 6.30071 6.37437 6.48000 6.48927 6.62281 6.66949 6.73237 6.79401 6.85260 6.88184 6.92306 6.97245 7.03991 7.53353 7.65114 7.92770 8.02621 8.68523 9.08281 9.59204 11.09865 Molecular weight = 343.19amu Principal moments of inertia in cm(-1) A = 0.014015 B = 0.003760 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.392965 B = 7445.932731 C = 9003.448446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.118 3.882 3 H 0.043 0.957 4 C -0.055 4.055 5 C -0.112 4.112 6 C 0.043 3.957 7 C 0.044 3.956 8 C -0.112 4.112 9 C -0.040 4.040 10 C -0.013 4.013 11 C -0.101 4.101 12 C -0.125 4.125 13 C -0.122 4.122 14 C -0.118 4.118 15 C 0.072 3.928 16 N -0.512 5.512 17 C 0.158 3.842 18 C -0.502 4.502 19 H 0.083 0.917 20 C 0.069 3.931 21 N -0.900 5.900 22 Si 0.871 3.129 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.268 1.268 26 O -0.310 6.310 27 C 0.028 3.972 28 C 0.028 3.972 29 O -0.310 6.310 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.056 0.944 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.023 0.977 44 H 0.096 0.904 45 H 0.034 0.966 46 H -0.015 1.015 47 H 0.263 0.737 48 H 0.114 0.886 49 H 0.069 0.931 50 H 0.070 0.930 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.169 -1.415 22.255 22.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.009 3.991 3 H 0.061 0.939 4 C -0.055 4.055 5 C -0.131 4.131 6 C -0.001 4.001 7 C 0.000 4.000 8 C -0.131 4.131 9 C -0.040 4.040 10 C -0.014 4.014 11 C -0.138 4.138 12 C -0.163 4.163 13 C -0.160 4.160 14 C -0.156 4.156 15 C -0.056 4.056 16 N -0.236 5.236 17 C 0.032 3.968 18 C -0.541 4.541 19 H 0.101 0.899 20 C -0.133 4.133 21 N -0.539 5.539 22 Si 0.699 3.301 23 H -0.204 1.204 24 H -0.213 1.213 25 H -0.193 1.193 26 O -0.225 6.225 27 C -0.048 4.048 28 C -0.048 4.048 29 O -0.225 6.225 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.041 0.959 44 H 0.114 0.886 45 H 0.051 0.949 46 H 0.003 0.997 47 H 0.073 0.927 48 H 0.132 0.868 49 H 0.087 0.913 50 H 0.088 0.912 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.908 -1.885 22.081 22.503 hybrid contribution 0.043 1.776 0.210 1.788 sum 3.950 -0.109 22.291 22.638 Atomic orbital electron populations 1.21938 0.93736 1.03196 1.00991 1.20337 0.95818 0.94442 0.88455 0.93949 1.19454 0.95073 0.97276 0.93735 1.20276 1.01545 1.02574 0.88728 1.18597 0.94046 1.00898 0.86542 1.18649 0.95510 0.98604 0.87273 1.20262 1.01109 1.02702 0.89010 1.19322 0.95432 0.95455 0.93819 1.19945 0.93142 0.97206 0.91059 1.22376 0.98037 0.92783 1.00613 1.22538 0.94847 0.99653 0.99256 1.22370 0.98579 0.95959 0.99084 1.22359 0.94351 0.97499 1.01359 1.22152 0.88809 0.95515 0.99129 1.62214 1.10670 1.49726 1.00975 1.20290 0.95497 0.92915 0.88072 1.21003 1.46553 0.98096 0.88432 0.89928 1.24878 0.95261 0.97130 0.96005 1.69890 1.50156 1.35285 0.98575 0.86928 0.78853 0.86392 0.77939 1.20436 1.21251 1.19287 1.85675 1.68429 1.56239 1.12135 1.22996 0.95295 1.01682 0.84831 1.22995 0.96577 0.96264 0.88979 1.85666 1.65863 1.53759 1.17200 0.92859 0.91811 0.91371 0.84812 0.84940 0.92492 0.89034 0.90937 0.92057 0.92032 0.92200 0.91420 0.91649 0.95898 0.88589 0.94856 0.99722 0.92748 0.86775 0.91260 0.91158 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.65 37.16 0.32 -1.97 16 2 C 0.12 2.07 2.36 -69.08 -0.16 1.91 16 3 H 0.04 0.75 8.13 -51.93 -0.42 0.33 16 4 C -0.05 -0.89 5.48 -104.61 -0.57 -1.46 16 5 C -0.11 -1.68 8.99 -39.33 -0.35 -2.03 16 6 C 0.04 0.63 6.58 -39.19 -0.26 0.37 16 7 C 0.04 0.63 6.58 -39.18 -0.26 0.38 16 8 C -0.11 -1.64 8.22 -39.33 -0.32 -1.96 16 9 C -0.04 -0.63 4.63 -104.69 -0.48 -1.11 16 10 C -0.01 -0.20 0.58 -155.09 -0.09 -0.29 16 11 C -0.10 -1.61 5.74 -25.16 -0.14 -1.76 16 12 C -0.13 -1.77 6.91 -24.70 -0.17 -1.94 16 13 C -0.12 -1.50 6.84 -25.02 -0.17 -1.67 16 14 C -0.12 -1.58 5.53 -25.71 -0.14 -1.72 16 15 C 0.07 1.34 3.70 -3.84 -0.01 1.33 16 16 N -0.51 -10.32 3.96 -229.74 -0.91 -11.23 16 17 C 0.16 3.69 3.67 -4.98 -0.02 3.67 16 18 C -0.50 -13.74 9.05 -34.44 -0.31 -14.05 16 19 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 20 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 21 N -0.90 -27.03 13.96 55.43 0.77 -26.25 16 22 Si 0.87 21.16 27.38 -169.99 -4.65 16.50 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.27 -6.25 6.67 56.52 0.38 -5.87 16 26 O -0.31 -3.94 10.26 -31.81 -0.33 -4.27 16 27 C 0.03 0.23 7.24 36.69 0.27 0.50 16 28 C 0.03 0.24 7.24 36.69 0.27 0.50 16 29 O -0.31 -3.98 10.26 -31.81 -0.33 -4.31 16 30 H 0.05 0.72 6.20 -51.93 -0.32 0.39 16 31 H 0.06 1.08 6.34 -51.93 -0.33 0.75 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.13 1.81 6.30 -52.49 -0.33 1.48 16 34 H 0.13 1.77 7.02 -52.49 -0.37 1.40 16 35 H 0.06 0.88 7.63 -51.93 -0.40 0.48 16 36 H 0.09 1.75 7.55 -51.93 -0.39 1.36 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.91 7.66 -51.93 -0.40 0.51 16 42 H 0.06 0.83 6.29 -51.93 -0.33 0.50 16 43 H 0.02 0.42 8.05 -51.93 -0.42 0.00 16 44 H 0.10 1.98 7.32 -51.93 -0.38 1.60 16 45 H 0.03 0.78 5.18 -51.93 -0.27 0.52 16 46 H -0.01 -0.35 7.19 -51.93 -0.37 -0.73 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 48 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 51 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 380.67 15.07 5.74 5.74 Total: -1.00 -30.80 380.67 -10.54 -41.34 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -8.11 Total: 1.94 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -2.72 Total: -19.46 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: -0.14 Total: -37.49 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -0.65 Total: -8.58 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.65 Total: 16.50 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.80 -10.54 -41.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058571529.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.060 kcal (2) G-P(sol) polarization free energy of solvation -30.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds