Wall clock time and date at job start Tue Mar 31 2020 06:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53246 * 112.47270 * 2 1 4 4 C 1.51509 * 110.92101 * 293.17424 * 3 2 1 5 5 C 1.51707 * 108.31154 * 301.97109 * 4 3 2 6 6 C 1.33026 * 118.31754 * 230.28516 * 5 4 3 7 7 C 1.50979 * 120.92057 * 4.66105 * 6 5 4 8 8 C 1.53160 * 108.79000 * 137.46683 * 7 6 5 9 9 C 1.50519 * 109.90913 * 50.43861 * 8 7 6 10 10 O 1.21469 * 119.42762 * 142.82875 * 9 8 7 11 11 C 1.40567 * 121.14574 * 322.79823 * 9 8 7 12 12 C 1.35080 * 120.60358 * 8.32479 * 11 9 8 13 13 C 1.50777 * 121.80416 * 184.45368 * 12 11 9 14 14 C 1.52785 * 108.03326 * 136.44541 * 13 12 11 15 15 C 1.49694 * 118.23760 * 51.79733 * 5 4 3 16 16 H 1.08991 * 106.72129 * 73.14545 * 15 5 4 17 17 C 1.50997 * 112.25160 * 316.14180 * 15 5 4 18 18 H 1.09003 * 108.70470 * 163.88815 * 17 15 5 19 19 C 1.53909 * 112.51393 * 284.17066 * 17 15 5 20 20 C 1.54675 * 103.29780 * 164.07530 * 19 17 15 21 21 C 1.54059 * 106.58124 * 337.01307 * 20 19 17 22 22 O 1.42902 * 110.15500 * 117.14693 * 21 20 19 23 23 C 1.50694 * 110.10686 * 238.74578 * 21 20 19 24 24 H 1.08006 * 119.99784 * 116.53808 * 23 21 20 25 25 C 1.37870 * 120.00515 * 296.53256 * 23 21 20 26 26 N 1.31511 * 120.00511 * 171.02806 * 25 23 21 27 27 Si 1.86804 * 119.99831 * 351.03281 * 25 23 21 28 28 H 1.48492 * 109.47199 * 275.33733 * 27 25 23 29 29 H 1.48505 * 109.47148 * 155.33518 * 27 25 23 30 30 H 1.48505 * 109.46779 * 35.33979 * 27 25 23 31 31 H 1.08994 * 109.47088 * 301.71592 * 1 2 3 32 32 H 1.08993 * 109.47607 * 61.71872 * 1 2 3 33 33 H 1.09006 * 109.46863 * 181.72091 * 1 2 3 34 34 H 1.09004 * 109.33288 * 54.01384 * 3 2 1 35 35 H 1.08999 * 109.33374 * 173.51506 * 3 2 1 36 36 H 1.08999 * 109.89604 * 182.11127 * 4 3 2 37 37 H 1.08999 * 109.44077 * 61.55680 * 4 3 2 38 38 H 1.08994 * 109.58216 * 17.68014 * 7 6 5 39 39 H 1.09001 * 109.71421 * 257.32768 * 7 6 5 40 40 H 1.08994 * 109.39417 * 290.30434 * 8 7 6 41 41 H 1.08995 * 109.32696 * 170.52723 * 8 7 6 42 42 H 1.07999 * 119.69936 * 188.33572 * 11 9 8 43 43 H 1.09000 * 109.75508 * 16.81398 * 13 12 11 44 44 H 1.08994 * 109.75164 * 256.08035 * 13 12 11 45 45 H 1.08995 * 109.04362 * 296.46308 * 14 13 12 46 46 H 1.09004 * 109.04406 * 177.58014 * 14 13 12 47 47 H 1.09007 * 110.65152 * 282.52725 * 19 17 15 48 48 H 1.09006 * 110.65437 * 45.45310 * 19 17 15 49 49 H 1.09006 * 110.03335 * 217.74107 * 20 19 17 50 50 H 1.08996 * 110.03656 * 96.29638 * 20 19 17 51 51 H 0.96707 * 113.99963 * 62.31035 * 22 21 20 52 52 H 0.97002 * 120.00229 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1158 1.4161 0.0000 4 6 1.8080 2.1289 -1.3010 5 6 2.3777 1.3065 -2.4415 6 6 3.1388 1.9205 -3.3433 7 6 3.5154 3.3735 -3.1807 8 6 4.9937 3.5435 -3.5433 9 6 5.2707 2.9060 -4.8784 10 8 6.0546 3.4346 -5.6410 11 6 4.6383 1.7093 -5.2578 12 6 3.6429 1.1895 -4.5071 13 6 3.0132 -0.1410 -4.8335 14 6 2.8512 -0.9203 -3.5293 15 6 2.0254 -0.1467 -2.5117 16 1 0.9857 -0.2021 -2.8339 17 6 2.1081 -0.8209 -1.1632 18 1 1.5779 -1.7719 -1.2147 19 6 3.5592 -1.0918 -0.7276 20 6 3.4285 -1.3789 0.7866 21 6 2.1182 -0.7133 1.2488 22 8 1.2043 -1.7033 1.7249 23 6 2.4030 0.2928 2.3340 24 1 2.1964 1.3398 2.1674 25 6 2.9272 -0.1231 3.5394 26 7 3.3400 0.7640 4.4181 27 14 3.0511 -1.9468 3.9245 28 1 1.7580 -2.4253 4.4758 29 1 4.1277 -2.1698 4.9228 30 1 3.3664 -2.6949 2.6811 31 1 -0.3633 0.5402 0.8742 32 1 -0.3634 0.4869 -0.9049 33 1 -0.3633 -1.0273 0.0309 34 1 1.6952 1.9806 0.8323 35 1 3.1981 1.3589 0.1162 36 1 2.2634 3.1192 -1.2982 37 1 0.7281 2.2209 -1.4176 38 1 3.3554 3.6788 -2.1467 39 1 2.9042 3.9879 -3.8418 40 1 5.6104 3.0685 -2.7804 41 1 5.2331 4.6057 -3.5927 42 1 4.9514 1.2007 -6.1576 43 1 3.6568 -0.6956 -5.5163 44 1 2.0371 0.0161 -5.2923 45 1 3.8370 -1.1199 -3.1095 46 1 2.3574 -1.8687 -3.7407 47 1 3.9618 -1.9596 -1.2502 48 1 4.1832 -0.2154 -0.9030 49 1 4.2748 -0.9492 1.3226 50 1 3.3827 -2.4540 0.9603 51 1 1.5215 -2.1929 2.4963 52 1 3.7091 0.4714 5.2661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059027220.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:03 Heat of formation + Delta-G solvation = -56.794944 kcal Electronic energy + Delta-G solvation = -32544.586866 eV Core-core repulsion = 28666.866484 eV Total energy + Delta-G solvation = -3877.720382 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.198 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.02724 -39.71939 -37.97225 -35.52671 -34.91073 -33.04400 -32.44682 -32.03672 -30.32270 -29.14799 -28.47828 -26.83145 -25.08790 -24.06752 -23.29595 -23.02561 -22.11950 -20.64417 -20.09353 -18.85797 -17.64205 -16.78228 -16.56608 -16.20081 -15.98607 -15.63260 -15.32890 -15.07808 -14.61135 -14.18954 -14.05843 -13.75888 -13.62721 -13.47220 -13.31215 -13.16231 -12.93592 -12.73913 -12.35763 -12.33103 -12.19320 -12.02614 -11.86824 -11.70143 -11.52935 -11.43923 -11.25372 -11.08184 -10.91080 -10.70911 -10.44335 -10.31664 -10.25300 -9.99566 -9.85821 -9.74697 -9.66615 -9.40592 -9.32063 -9.04454 -8.65918 -8.35229 -8.05873 -6.26448 -4.27364 0.51420 2.16082 3.09235 3.12363 3.18662 3.24573 4.19235 4.28083 4.30405 4.46773 4.69756 4.73718 4.87853 4.93333 4.97219 5.06312 5.11241 5.21386 5.26808 5.29971 5.35459 5.46150 5.50285 5.55942 5.62535 5.71236 5.75339 5.81369 5.83849 5.86479 5.88476 5.93099 6.00424 6.11074 6.13411 6.15335 6.19750 6.20397 6.29228 6.30162 6.40820 6.44839 6.54712 6.62295 6.68007 6.76094 6.77400 6.93109 6.94436 7.08058 7.10054 7.27423 7.55366 7.64628 8.30556 8.73180 8.78955 9.35717 10.85120 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016455 B = 0.003821 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.207289 B = 7326.091364 C = 7783.677263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.026 4.026 3 C -0.093 4.093 4 C -0.109 4.109 5 C -0.021 4.021 6 C -0.165 4.165 7 C -0.073 4.073 8 C -0.166 4.166 9 C 0.393 3.607 10 O -0.485 6.485 11 C -0.273 4.273 12 C 0.046 3.954 13 C -0.096 4.096 14 C -0.114 4.114 15 C -0.045 4.045 16 H 0.078 0.922 17 C -0.075 4.075 18 H 0.070 0.930 19 C -0.113 4.113 20 C -0.154 4.154 21 C 0.222 3.778 22 O -0.575 6.575 23 C -0.539 4.539 24 H 0.095 0.905 25 C 0.079 3.921 26 N -0.886 5.886 27 Si 0.843 3.157 28 H -0.273 1.273 29 H -0.292 1.292 30 H -0.246 1.246 31 H 0.058 0.942 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.129 0.871 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.052 0.948 48 H 0.063 0.937 49 H 0.070 0.930 50 H 0.052 0.948 51 H 0.344 0.656 52 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.585 -1.038 -14.938 15.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.026 4.026 3 C -0.130 4.130 4 C -0.146 4.146 5 C -0.021 4.021 6 C -0.165 4.165 7 C -0.110 4.110 8 C -0.204 4.204 9 C 0.276 3.724 10 O -0.366 6.366 11 C -0.292 4.292 12 C 0.045 3.955 13 C -0.133 4.133 14 C -0.151 4.151 15 C -0.063 4.063 16 H 0.096 0.904 17 C -0.093 4.093 18 H 0.088 0.912 19 C -0.150 4.150 20 C -0.192 4.192 21 C 0.183 3.817 22 O -0.385 6.385 23 C -0.576 4.576 24 H 0.113 0.887 25 C -0.124 4.124 26 N -0.523 5.523 27 Si 0.672 3.328 28 H -0.200 1.200 29 H -0.219 1.219 30 H -0.171 1.171 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.147 0.853 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.071 0.929 48 H 0.082 0.918 49 H 0.088 0.912 50 H 0.071 0.929 51 H 0.194 0.806 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.442 -0.519 -15.620 15.819 hybrid contribution 0.543 -1.391 1.001 1.798 sum -1.899 -1.910 -14.620 14.866 Atomic orbital electron populations 1.21422 0.94375 1.01639 1.00098 1.20986 0.94628 0.94199 0.92757 1.21434 1.02154 0.94765 0.94631 1.21156 1.00859 0.98409 0.94128 1.22204 0.91741 0.94970 0.93183 1.19962 1.03979 0.95992 0.96522 1.20651 0.94198 0.92816 1.03343 1.22023 0.98347 1.02703 0.97277 1.20843 0.79160 0.84588 0.87787 1.90565 1.30923 1.62551 1.52535 1.22003 1.02687 1.00876 1.03584 1.21414 0.90777 0.92897 0.90367 1.20802 1.01373 0.92598 0.98496 1.21406 1.01736 0.98456 0.93523 1.19231 1.00130 0.90859 0.96105 0.90420 1.21295 0.97267 0.98768 0.91978 0.91185 1.22255 0.95916 1.00162 0.96667 1.23455 1.01394 0.99575 0.94821 1.20163 0.84114 0.85375 0.92013 1.86478 1.48874 1.54211 1.48966 1.21783 1.42241 0.96101 0.97456 0.88709 1.24986 0.94127 0.96829 0.96486 1.69893 1.40343 1.33538 1.08523 0.87746 0.78102 0.87541 0.79409 1.19954 1.21930 1.17100 0.92283 0.94434 0.92485 0.89858 0.91045 0.90204 0.90392 0.88768 0.90838 0.88222 0.89071 0.85297 0.90047 0.89572 0.90815 0.90819 0.92929 0.91836 0.91171 0.92919 0.80589 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 8.10 37.16 0.30 -1.64 16 2 C -0.03 -0.44 0.48 -152.78 -0.07 -0.51 16 3 C -0.09 -1.54 3.17 -27.36 -0.09 -1.63 16 4 C -0.11 -1.40 5.55 -28.14 -0.16 -1.55 16 5 C -0.02 -0.25 5.13 -101.15 -0.52 -0.77 16 6 C -0.16 -1.90 5.59 -103.02 -0.58 -2.48 16 7 C -0.07 -0.78 5.66 -27.66 -0.16 -0.93 16 8 C -0.17 -1.87 6.07 -27.89 -0.17 -2.04 16 9 C 0.39 5.30 6.72 -33.52 -0.23 5.07 16 10 O -0.49 -8.08 17.80 5.39 0.10 -7.99 16 11 C -0.27 -3.27 9.52 -39.83 -0.38 -3.65 16 12 C 0.05 0.51 5.63 -102.43 -0.58 -0.06 16 13 C -0.10 -0.87 6.08 -27.96 -0.17 -1.04 16 14 C -0.11 -1.16 5.08 -27.26 -0.14 -1.29 16 15 C -0.05 -0.54 2.11 -93.68 -0.20 -0.74 16 16 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 17 C -0.07 -1.10 1.67 -90.81 -0.15 -1.25 16 18 H 0.07 1.07 8.11 -51.93 -0.42 0.64 16 19 C -0.11 -1.79 4.48 -25.38 -0.11 -1.90 16 20 C -0.15 -3.04 4.31 -25.30 -0.11 -3.15 16 21 C 0.22 4.69 0.59 -89.96 -0.05 4.63 16 22 O -0.57 -12.75 11.49 -35.23 -0.40 -13.16 16 23 C -0.54 -13.42 7.78 -34.45 -0.27 -13.68 16 24 H 0.10 2.49 5.24 -52.48 -0.27 2.22 16 25 C 0.08 2.08 5.24 -17.82 -0.09 1.99 16 26 N -0.89 -25.08 13.96 55.43 0.77 -24.31 16 27 Si 0.84 19.18 23.68 -169.99 -4.03 15.16 16 28 H -0.27 -6.16 7.08 56.52 0.40 -5.76 16 29 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 30 H -0.25 -5.17 4.41 56.52 0.25 -4.92 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.04 0.51 7.16 -51.93 -0.37 0.14 16 33 H 0.06 0.96 7.53 -51.93 -0.39 0.57 16 34 H 0.08 1.56 6.10 -51.93 -0.32 1.24 16 35 H 0.07 1.31 6.55 -51.93 -0.34 0.97 16 36 H 0.08 0.92 5.07 -51.93 -0.26 0.66 16 37 H 0.08 0.94 7.12 -51.93 -0.37 0.57 16 38 H 0.09 0.95 5.39 -51.93 -0.28 0.67 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 43 H 0.08 0.64 8.05 -51.93 -0.42 0.22 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.82 6.31 -51.93 -0.33 0.49 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.05 0.74 7.48 -51.92 -0.39 0.36 16 48 H 0.06 1.02 7.17 -51.93 -0.37 0.65 16 49 H 0.07 1.50 7.11 -51.93 -0.37 1.13 16 50 H 0.05 1.04 6.34 -51.93 -0.33 0.71 16 51 H 0.34 7.58 3.71 45.56 0.17 7.75 16 52 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 362.23 15.07 5.46 5.46 Total: -1.00 -28.93 362.23 -9.75 -38.68 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -7.73 Total: 12.81 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -3.91 Total: -26.65 kcal Atomic # 7 Polarization: -25.08 SS G_CDS: 0.77 Total: -24.31 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.31 Total: -21.14 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.03 Total: 15.16 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.93 -9.75 -38.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059027220.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.119 kcal (2) G-P(sol) polarization free energy of solvation -28.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds