Wall clock time and date at job start Tue Mar 31 2020 05:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36580 * 120.01521 * 2 1 4 4 C 1.39831 * 120.03102 * 179.97438 * 3 2 1 5 5 C 1.47679 * 119.96140 * 180.02562 * 4 3 2 6 6 O 1.21479 * 119.99818 * 0.02562 * 5 4 3 7 7 O 1.34731 * 120.00230 * 179.97438 * 5 4 3 8 8 C 1.39867 * 120.07891 * 0.02562 * 4 3 2 9 9 C 1.36540 * 120.03432 * 359.95453 * 8 4 3 10 10 C 1.40134 * 120.01757 * 179.72201 * 2 1 3 11 11 C 1.47044 * 120.03911 * 0.02562 * 10 2 1 12 12 C 1.38936 * 125.71970 * 129.71401 * 11 10 2 13 13 C 1.38729 * 107.03268 * 179.84082 * 12 11 10 14 14 C 1.39750 * 106.83322 * 0.41534 * 13 12 11 15 15 C 1.40641 * 125.90102 * 179.76962 * 14 13 12 16 16 N 1.31417 * 120.00229 * 179.97438 * 15 14 13 17 17 N 1.40099 * 120.00097 * 180.02562 * 16 15 14 18 18 C 1.34770 * 119.99714 * 180.02562 * 17 16 15 19 19 O 1.22138 * 120.00381 * 0.02562 * 18 17 16 20 20 C 1.39345 * 119.99952 * 180.02562 * 18 17 16 21 21 H 1.07994 * 119.99914 * 0.02562 * 20 18 17 22 22 C 1.39943 * 119.99836 * 179.97438 * 20 18 17 23 23 N 1.30754 * 120.00266 * 0.02562 * 22 20 18 24 24 Si 1.86800 * 119.99567 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47470 * 60.00085 * 24 22 20 26 26 H 1.48497 * 109.46870 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47216 * 299.99969 * 24 22 20 28 28 O 1.34601 * 125.71631 * 310.02604 * 11 10 2 29 29 H 1.09002 * 109.47152 * 89.99949 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.00050 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.00030 * 1 2 3 32 32 H 1.07990 * 119.98567 * 359.95506 * 3 2 1 33 33 H 0.96694 * 117.00184 * 179.97438 * 7 5 4 34 34 H 1.08001 * 119.98367 * 179.97438 * 8 4 3 35 35 H 1.08005 * 120.01990 * 179.97438 * 9 8 4 36 36 H 1.08000 * 126.48588 * 359.96617 * 12 11 10 37 37 H 1.08001 * 126.58380 * 180.15195 * 13 12 11 38 38 H 1.08000 * 120.00442 * 359.97438 * 15 14 13 39 39 H 0.96996 * 120.00001 * 0.02562 * 17 16 15 40 40 H 0.97004 * 119.99987 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.1826 0.0000 4 6 3.5885 1.1830 0.0005 5 6 4.3257 2.4627 0.0011 6 8 3.7173 3.5141 0.0016 7 8 5.6730 2.4640 0.0022 8 6 4.2899 -0.0271 0.0005 9 6 3.6099 -1.2111 0.0010 10 6 2.2081 -1.2134 0.0059 11 6 1.4741 -2.4875 0.0115 12 6 1.6941 -3.5541 -0.8512 13 6 0.7944 -4.5509 -0.5027 14 6 0.0382 -4.0585 0.5644 15 6 -0.9966 -4.7428 1.2270 16 7 -1.6338 -4.1668 2.2216 17 7 -2.6642 -4.8487 2.8819 18 6 -3.3180 -4.2577 3.9015 19 8 -3.0126 -3.1275 4.2496 20 6 -4.3425 -4.9361 4.5587 21 1 -4.6122 -5.9356 4.2513 22 6 -5.0210 -4.3226 5.6178 23 7 -4.6941 -3.1127 5.9903 24 14 -6.3939 -5.2324 6.4992 25 1 -5.8572 -6.4830 7.0935 26 1 -6.9479 -4.3709 7.5744 27 1 -7.4684 -5.5663 5.5301 28 8 0.4725 -2.8137 0.8495 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5138 31 1 -0.3633 -0.8900 0.5139 32 1 1.6503 2.1179 -0.0007 33 1 6.1112 3.3260 0.0021 34 1 5.3699 -0.0250 0.0005 35 1 4.1517 -2.1454 0.0005 36 1 2.4282 -3.5996 -1.6421 37 1 0.6944 -5.5197 -0.9694 38 1 -1.2675 -5.7417 0.9186 39 1 -2.9070 -5.7461 2.6053 40 1 -5.1647 -2.6873 6.7242 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059197384.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:45 Heat of formation + Delta-G solvation = -48.180049 kcal Electronic energy + Delta-G solvation = -27278.947878 eV Core-core repulsion = 23026.394534 eV Total energy + Delta-G solvation = -4252.553345 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.109 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.28158 -40.68980 -39.10653 -37.78167 -36.40102 -35.46165 -33.41871 -33.17669 -32.78870 -32.27386 -31.13432 -28.59457 -27.24732 -26.67884 -25.19967 -22.78635 -22.38872 -21.47323 -21.01208 -20.35950 -19.76864 -18.26428 -17.99920 -17.56569 -16.96893 -16.24863 -16.22185 -15.92496 -15.70962 -15.22074 -14.97359 -14.60181 -14.12466 -14.00510 -13.77286 -13.56796 -13.33366 -13.01220 -12.98182 -12.81591 -12.57913 -12.32632 -12.25043 -11.88585 -11.79467 -11.54801 -11.48649 -11.34528 -11.01725 -10.92550 -10.73759 -10.47082 -9.91805 -9.80272 -9.50176 -9.16496 -9.05404 -8.48382 -7.86486 -7.13775 -6.47983 -5.07243 0.10787 1.10432 1.15744 2.08101 2.43354 2.67212 2.92788 3.00798 3.05763 3.08818 3.26379 3.51116 3.57860 4.00518 4.34711 4.42005 4.52452 4.56166 4.77508 4.89525 4.92666 5.09535 5.18314 5.36837 5.52290 5.55126 5.64830 5.65871 5.67595 5.74680 5.78437 5.95142 6.02021 6.06126 6.11375 6.13676 6.33172 6.38287 6.53122 6.56754 7.11481 7.20816 7.56025 7.73947 7.85960 8.44341 8.66387 9.16513 10.29447 10.53879 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.015259 B = 0.002079 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.499027 B =13462.443483 C =14864.942493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.070 4.070 3 C -0.052 4.052 4 C -0.126 4.126 5 C 0.528 3.472 6 O -0.513 6.513 7 O -0.513 6.513 8 C -0.066 4.066 9 C -0.106 4.106 10 C 0.028 3.972 11 C -0.009 4.009 12 C -0.167 4.167 13 C -0.198 4.198 14 C 0.078 3.922 15 C 0.015 3.985 16 N -0.159 5.159 17 N -0.577 5.577 18 C 0.552 3.448 19 O -0.551 6.551 20 C -0.531 4.531 21 H 0.072 0.928 22 C 0.086 3.914 23 N -0.739 5.739 24 Si 0.920 3.080 25 H -0.264 1.264 26 H -0.277 1.277 27 H -0.264 1.264 28 O -0.133 6.133 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.414 0.586 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.152 0.848 37 H 0.155 0.845 38 H 0.137 0.863 39 H 0.372 0.628 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.731 1.649 -15.065 22.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.070 4.070 3 C -0.070 4.070 4 C -0.127 4.127 5 C 0.373 3.627 6 O -0.403 6.403 7 O -0.324 6.324 8 C -0.084 4.084 9 C -0.124 4.124 10 C 0.028 3.972 11 C -0.063 4.063 12 C -0.187 4.187 13 C -0.221 4.221 14 C 0.024 3.976 15 C -0.190 4.190 16 N 0.026 4.974 17 N -0.324 5.324 18 C 0.362 3.638 19 O -0.430 6.430 20 C -0.567 4.567 21 H 0.090 0.910 22 C -0.138 4.138 23 N -0.366 5.366 24 Si 0.743 3.257 25 H -0.189 1.189 26 H -0.202 1.202 27 H -0.189 1.189 28 O -0.026 6.026 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.160 0.840 33 H 0.273 0.727 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.169 0.831 37 H 0.173 0.827 38 H 0.154 0.846 39 H 0.208 0.792 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 16.183 3.507 -13.727 21.508 hybrid contribution -0.475 -1.289 -0.247 1.396 sum 15.708 2.218 -13.973 21.140 Atomic orbital electron populations 1.20989 0.89513 1.04765 1.03007 1.19908 0.97195 0.91358 0.98530 1.20833 0.91951 0.98745 0.95508 1.19129 0.93215 0.90637 1.09768 1.20901 0.80338 0.89463 0.71996 1.90902 1.69384 1.33782 1.46213 1.84555 1.21125 1.40878 1.85889 1.21050 1.00671 0.90727 0.95959 1.20991 0.92057 0.98884 1.00504 1.18050 0.92127 0.88749 0.98288 1.20817 0.93812 0.95761 0.95863 1.21808 1.02669 0.92510 1.01678 1.21957 0.99309 1.01440 0.99426 1.19606 0.97329 0.83162 0.97507 1.21863 0.98927 0.98813 0.99357 1.75363 0.96511 1.23474 1.02038 1.48304 1.32197 1.16979 1.34923 1.16519 0.82416 0.87066 0.77814 1.90799 1.67761 1.19249 1.65210 1.19405 1.17592 1.02946 1.16806 0.90991 1.25765 0.97414 0.94524 0.96131 1.70079 1.33916 1.11574 1.20989 0.86222 0.80474 0.79867 0.79099 1.18904 1.20155 1.18904 1.84342 1.40494 1.29643 1.48081 0.90646 0.90661 0.89632 0.84026 0.72726 0.83989 0.84331 0.83076 0.82710 0.84625 0.79231 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 9.62 36.01 0.35 -1.29 16 2 C -0.07 -0.87 5.89 -104.51 -0.62 -1.49 16 3 C -0.05 -0.61 9.17 -39.58 -0.36 -0.97 16 4 C -0.13 -1.35 5.88 -104.84 -0.62 -1.97 16 5 C 0.53 5.52 8.27 34.59 0.29 5.80 16 6 O -0.51 -6.82 17.12 -19.25 -0.33 -7.15 16 7 O -0.51 -3.60 12.66 -40.58 -0.51 -4.12 16 8 C -0.07 -0.60 9.55 -39.59 -0.38 -0.98 16 9 C -0.11 -1.03 9.65 -39.47 -0.38 -1.41 16 10 C 0.03 0.35 5.81 -104.89 -0.61 -0.26 16 11 C -0.01 -0.13 6.02 -35.75 -0.22 -0.34 16 12 C -0.17 -1.90 10.76 -39.14 -0.42 -2.32 16 13 C -0.20 -2.35 10.88 -38.84 -0.42 -2.78 16 14 C 0.08 1.21 6.96 -38.11 -0.27 0.95 16 15 C 0.02 0.25 10.71 -16.82 -0.18 0.07 16 16 N -0.16 -3.55 11.03 30.88 0.34 -3.21 16 17 N -0.58 -13.42 6.26 28.66 0.18 -13.24 16 18 C 0.55 15.80 7.61 -15.85 -0.12 15.68 16 19 O -0.55 -18.33 15.16 4.79 0.07 -18.26 16 20 C -0.53 -14.34 9.18 -38.53 -0.35 -14.69 16 21 H 0.07 1.71 7.84 -52.49 -0.41 1.30 16 22 C 0.09 2.29 5.49 -17.37 -0.10 2.19 16 23 N -0.74 -21.36 11.68 55.54 0.65 -20.71 16 24 Si 0.92 18.92 29.56 -169.99 -5.02 13.89 16 25 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 26 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 27 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 28 O -0.13 -2.28 8.70 3.27 0.03 -2.25 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 31 H 0.08 1.34 5.63 -51.93 -0.29 1.05 16 32 H 0.14 1.57 7.63 -52.49 -0.40 1.17 16 33 H 0.41 1.08 9.11 45.56 0.42 1.49 16 34 H 0.14 0.96 7.59 -52.49 -0.40 0.56 16 35 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.14 1.73 8.04 -52.49 -0.42 1.31 16 39 H 0.37 7.03 8.62 -182.60 -1.57 5.45 16 40 H 0.28 7.16 8.29 -40.82 -0.34 6.82 16 LS Contribution 368.09 15.07 5.55 5.55 Total: -1.00 -37.94 368.09 -7.79 -45.73 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -4.33 Total: 7.58 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -4.41 Total: -3.80 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 1.17 Total: -37.15 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.74 Total: -31.79 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.94 -7.79 -45.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059197384.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.455 kcal (2) G-P(sol) polarization free energy of solvation -37.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds