Wall clock time and date at job start Tue Mar 31 2020 04:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47365 * 2 1 4 4 N 1.46504 * 109.47010 * 181.63079 * 3 2 1 5 5 C 1.37102 * 119.99512 * 97.11339 * 4 3 2 6 6 H 1.08005 * 119.99653 * 162.28020 * 5 4 3 7 7 C 1.38945 * 120.00029 * 342.54419 * 5 4 3 8 8 N 1.31410 * 120.00409 * 355.49053 * 7 5 4 9 9 Si 1.86804 * 119.99775 * 175.49386 * 7 5 4 10 10 H 1.48499 * 109.47478 * 59.99769 * 9 7 5 11 11 H 1.48501 * 109.47202 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47143 * 299.99798 * 9 7 5 13 13 C 1.34778 * 120.00330 * 277.10839 * 4 3 2 14 14 O 1.21288 * 119.99466 * 353.42786 * 13 4 3 15 15 C 1.50694 * 119.99847 * 173.42354 * 13 4 3 16 16 H 1.08993 * 109.48048 * 323.51470 * 15 13 4 17 17 C 1.53007 * 109.46903 * 83.51710 * 15 13 4 18 18 C 1.50700 * 109.47178 * 203.51017 * 15 13 4 19 19 C 1.39372 * 119.50601 * 299.73529 * 18 15 13 20 20 C 1.36090 * 120.98335 * 179.70829 * 19 18 15 21 21 C 1.40578 * 119.65158 * 0.55556 * 20 19 18 22 22 C 1.40460 * 121.23019 * 179.70132 * 21 20 19 23 23 C 1.36572 * 119.62348 * 180.02562 * 22 21 20 24 24 O 1.35886 * 119.56780 * 179.97438 * 23 22 21 25 25 C 1.42901 * 116.99585 * 180.02562 * 24 23 22 26 26 C 1.39849 * 120.86080 * 359.97438 * 23 22 21 27 27 C 1.35987 * 120.93575 * 359.97438 * 26 23 22 28 28 C 1.40586 * 119.73091 * 0.02562 * 27 26 23 29 29 C 1.36105 * 119.50195 * 120.00184 * 18 15 13 30 30 H 1.09003 * 109.46821 * 299.99715 * 1 2 3 31 31 H 1.09000 * 109.47174 * 59.99704 * 1 2 3 32 32 H 1.08999 * 109.47680 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46913 * 239.99512 * 2 1 3 34 34 H 1.09000 * 109.47174 * 120.00296 * 2 1 3 35 35 H 1.09001 * 109.47322 * 61.63495 * 3 2 1 36 36 H 1.09001 * 109.47269 * 301.63425 * 3 2 1 37 37 H 0.97000 * 119.99975 * 180.02562 * 8 7 5 38 38 H 1.09007 * 109.47014 * 184.14803 * 17 15 13 39 39 H 1.09000 * 109.46797 * 304.14098 * 17 15 13 40 40 H 1.08996 * 109.46961 * 64.14791 * 17 15 13 41 41 H 1.08001 * 119.50750 * 359.97438 * 19 18 15 42 42 H 1.07996 * 120.17225 * 180.30253 * 20 19 18 43 43 H 1.08003 * 120.18619 * 0.04738 * 22 21 20 44 44 H 1.08990 * 109.47274 * 60.00066 * 25 24 23 45 45 H 1.09005 * 109.46402 * 179.97438 * 25 24 23 46 46 H 1.09001 * 109.46641 * 299.99051 * 25 24 23 47 47 H 1.08002 * 119.53042 * 180.02562 * 26 23 22 48 48 H 1.07998 * 120.13070 * 180.02562 * 27 26 23 49 49 H 1.08003 * 120.16238 * 359.97438 * 29 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5045 1.4425 -0.0393 5 6 4.1581 1.6008 -1.2341 6 1 5.1997 1.8860 -1.2461 7 6 3.4789 1.3996 -2.4294 8 7 2.2364 0.9721 -2.4154 9 14 4.3323 1.7369 -4.0566 10 1 5.5321 0.8700 -4.1754 11 1 3.3988 1.4469 -5.1746 12 1 4.7440 3.1626 -4.1135 13 6 4.2093 1.2871 1.0990 14 8 3.6372 1.2669 2.1683 15 6 5.7078 1.1385 1.0430 16 1 5.9830 0.5594 0.1616 17 6 6.3550 2.5229 0.9661 18 6 6.1887 0.4274 2.2815 19 6 5.9512 0.9923 3.5333 20 6 6.3670 0.3731 4.6716 21 6 7.0568 -0.8489 4.5865 22 6 7.5063 -1.5133 5.7395 23 6 8.1736 -2.6987 5.6186 24 8 8.6085 -3.3403 6.7347 25 6 9.3007 -4.5758 6.5445 26 6 8.4153 -3.2609 4.3610 27 6 7.9921 -2.6429 3.2260 28 6 7.3020 -1.4212 3.3131 29 6 6.8533 -0.7542 2.1605 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.7008 1.9478 0.9043 36 1 1.6530 1.9647 -0.8750 37 1 1.7625 0.8313 -3.2500 38 1 7.4335 2.4138 0.8514 39 1 5.9518 3.0654 0.1110 40 1 6.1409 3.0753 1.8809 41 1 5.4257 1.9333 3.6012 42 1 6.1717 0.8202 5.6351 43 1 7.3249 -1.0893 6.7161 44 1 10.1910 -4.4042 5.9398 45 1 9.5925 -4.9815 7.5133 46 1 8.6467 -5.2840 6.0358 47 1 8.9448 -4.1995 4.2904 48 1 8.1854 -3.0889 2.2616 49 1 7.0335 -1.1779 1.1836 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059934319.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:54 Heat of formation + Delta-G solvation = -27.310467 kcal Electronic energy + Delta-G solvation = -29678.167967 eV Core-core repulsion = 25763.611695 eV Total energy + Delta-G solvation = -3914.556272 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.178 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.56153 -39.31419 -38.37348 -36.01231 -34.90424 -33.20552 -32.34558 -31.83074 -31.18039 -29.52401 -28.67132 -26.95449 -25.84079 -24.81032 -23.57554 -23.05167 -21.80860 -21.53407 -20.22628 -19.03269 -18.19897 -17.40148 -16.82623 -16.09540 -16.00288 -15.83853 -15.20798 -14.70383 -14.47593 -14.22836 -14.15251 -13.82750 -13.60153 -13.44860 -13.24581 -13.04807 -12.97593 -12.56923 -12.49893 -12.34329 -11.96608 -11.86472 -11.71360 -11.45134 -11.32095 -11.29082 -10.96411 -10.87089 -10.73698 -10.57495 -10.45545 -10.36970 -10.30027 -10.24580 -10.15030 -9.60218 -9.52388 -8.80534 -8.29952 -8.10168 -7.68409 -7.40677 -6.28311 -3.95566 0.76522 1.27061 2.31317 3.08243 3.16863 3.17221 3.19878 3.21720 3.89558 4.04214 4.35701 4.63891 4.80204 4.88403 4.91898 4.95539 5.06223 5.13447 5.17478 5.25040 5.34662 5.49320 5.57277 5.63086 5.79039 5.84345 5.95867 5.97794 6.06395 6.15124 6.19907 6.24662 6.32771 6.37159 6.43558 6.47756 6.51102 6.56095 6.62325 6.76543 6.80270 6.91929 6.94265 7.08387 7.13232 7.14179 7.26614 7.32266 7.39630 7.56722 7.76110 7.86556 8.46771 9.06014 9.55229 9.94711 10.62784 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015203 B = 0.002750 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.292787 B =10179.890105 C =10587.289557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 C 0.137 3.863 4 N -0.441 5.441 5 C -0.328 4.328 6 H 0.099 0.901 7 C 0.033 3.967 8 N -0.865 5.865 9 Si 0.922 3.078 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.463 3.537 14 O -0.602 6.602 15 C -0.063 4.063 16 H 0.097 0.903 17 C -0.135 4.135 18 C -0.051 4.051 19 C -0.051 4.051 20 C -0.134 4.134 21 C -0.014 4.014 22 C -0.151 4.151 23 C 0.116 3.884 24 O -0.322 6.322 25 C 0.029 3.971 26 C -0.200 4.200 27 C -0.062 4.062 28 C -0.081 4.081 29 C -0.101 4.101 30 H 0.036 0.964 31 H 0.053 0.947 32 H 0.036 0.964 33 H 0.087 0.913 34 H 0.028 0.972 35 H 0.029 0.971 36 H 0.109 0.891 37 H 0.267 0.733 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.128 0.872 42 H 0.123 0.877 43 H 0.130 0.870 44 H 0.053 0.947 45 H 0.096 0.904 46 H 0.053 0.947 47 H 0.125 0.875 48 H 0.128 0.872 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.803 -5.965 8.476 14.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.151 4.151 3 C 0.014 3.986 4 N -0.158 5.158 5 C -0.456 4.456 6 H 0.116 0.884 7 C -0.171 4.171 8 N -0.504 5.504 9 Si 0.749 3.251 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.200 1.200 13 C 0.251 3.749 14 O -0.488 6.488 15 C -0.085 4.085 16 H 0.115 0.885 17 C -0.193 4.193 18 C -0.051 4.051 19 C -0.069 4.069 20 C -0.152 4.152 21 C -0.015 4.015 22 C -0.170 4.170 23 C 0.071 3.929 24 O -0.236 6.236 25 C -0.067 4.067 26 C -0.219 4.219 27 C -0.080 4.080 28 C -0.081 4.081 29 C -0.119 4.119 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.127 0.873 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.146 0.854 42 H 0.141 0.859 43 H 0.148 0.852 44 H 0.072 0.928 45 H 0.115 0.885 46 H 0.072 0.928 47 H 0.143 0.857 48 H 0.146 0.854 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 10.317 -5.956 9.005 14.934 hybrid contribution 0.394 -0.257 -1.195 1.284 sum 10.711 -6.213 7.810 14.640 Atomic orbital electron populations 1.21565 0.97599 0.99593 1.00460 1.21695 0.93798 0.98621 1.00989 1.21401 0.79983 0.96768 1.00398 1.43753 1.05602 1.60805 1.05640 1.19717 0.97004 1.46175 0.82725 0.88384 1.25300 0.96059 0.96167 0.99563 1.70070 1.09865 1.43260 1.27203 0.86071 0.78930 0.78934 0.81175 1.19910 1.20881 1.19970 1.19845 0.88286 0.82398 0.84371 1.90522 1.71652 1.57378 1.29295 1.20122 0.94859 0.97604 0.95879 0.88509 1.21717 0.99639 0.95274 1.02653 1.19376 0.96311 0.94676 0.94785 1.20833 0.94649 1.00049 0.91349 1.20871 1.00567 0.94981 0.98785 1.17745 0.97270 0.94771 0.91664 1.20111 1.03379 0.94885 0.98604 1.18586 0.96191 0.92880 0.85225 1.86065 1.71252 1.36014 1.30243 1.23001 0.95891 0.84423 1.03356 1.20905 1.06656 1.02167 0.92147 1.20868 0.95285 0.93717 0.98122 1.17974 1.01273 0.95734 0.93094 1.20867 0.98881 0.94878 0.97300 0.94518 0.92770 0.94522 0.89511 0.95312 0.95254 0.87286 0.92217 0.92707 0.91012 0.92702 0.85384 0.85890 0.85235 0.92832 0.88543 0.92787 0.85733 0.85373 0.85721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.91 37.16 0.37 -2.24 16 2 C -0.11 -2.60 5.61 -26.74 -0.15 -2.75 16 3 C 0.14 3.33 4.56 -4.04 -0.02 3.31 16 4 N -0.44 -10.80 2.64 -114.81 -0.30 -11.10 16 5 C -0.33 -7.84 8.63 -14.93 -0.13 -7.97 16 6 H 0.10 2.18 5.25 -52.48 -0.28 1.91 16 7 C 0.03 0.77 5.27 -17.47 -0.09 0.68 16 8 N -0.86 -20.97 7.97 55.50 0.44 -20.53 16 9 Si 0.92 18.57 29.55 -169.99 -5.02 13.55 16 10 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 11 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 12 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 13 C 0.46 10.89 6.67 -10.99 -0.07 10.81 16 14 O -0.60 -15.48 14.21 5.55 0.08 -15.40 16 15 C -0.06 -1.22 2.04 -92.92 -0.19 -1.41 16 16 H 0.10 1.86 6.83 -51.93 -0.35 1.51 16 17 C -0.14 -2.27 8.77 37.16 0.33 -1.94 16 18 C -0.05 -0.93 4.60 -104.97 -0.48 -1.41 16 19 C -0.05 -0.90 7.71 -39.93 -0.31 -1.21 16 20 C -0.13 -2.14 9.77 -39.47 -0.39 -2.53 16 21 C -0.01 -0.23 5.74 -106.84 -0.61 -0.84 16 22 C -0.15 -2.16 9.68 -39.35 -0.38 -2.54 16 23 C 0.12 1.55 6.63 -39.58 -0.26 1.28 16 24 O -0.32 -3.87 10.47 -19.38 -0.20 -4.08 16 25 C 0.03 0.22 9.80 101.05 0.99 1.21 16 26 C -0.20 -2.43 8.93 -39.79 -0.36 -2.79 16 27 C -0.06 -0.81 9.76 -39.50 -0.39 -1.20 16 28 C -0.08 -1.27 5.74 -106.81 -0.61 -1.88 16 29 C -0.10 -1.68 9.36 -39.49 -0.37 -2.05 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 2.16 6.44 -51.93 -0.33 1.82 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.03 0.73 7.56 -51.93 -0.39 0.33 16 36 H 0.11 2.75 5.74 -51.93 -0.30 2.45 16 37 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.25 6.65 -51.93 -0.35 0.91 16 40 H 0.05 0.90 7.19 -51.93 -0.37 0.52 16 41 H 0.13 2.35 6.83 -52.49 -0.36 1.99 16 42 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 44 H 0.05 0.35 7.63 -51.93 -0.40 -0.04 16 45 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.37 7.63 -51.93 -0.40 -0.02 16 47 H 0.12 1.15 6.21 -52.49 -0.33 0.83 16 48 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 49 H 0.12 1.84 7.89 -52.48 -0.41 1.43 16 LS Contribution 388.56 15.07 5.86 5.86 Total: -1.00 -28.46 388.56 -9.48 -37.94 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -7.21 Total: 9.22 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -3.12 Total: -15.46 kcal Atomic # 7 Polarization: -31.77 SS G_CDS: 0.14 Total: -31.63 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.12 Total: -19.47 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.55 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.46 -9.48 -37.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059934319.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.630 kcal (2) G-P(sol) polarization free energy of solvation -28.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds