Wall clock time and date at job start Tue Mar 31 2020 06:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00459 * 2 1 4 4 C 1.50701 * 109.47041 * 270.00244 * 3 2 1 5 5 H 1.08001 * 120.00098 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00139 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99884 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99888 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47013 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.46752 * 119.99685 * 8 6 4 11 11 H 1.48498 * 109.47050 * 239.99443 * 8 6 4 12 12 C 1.34782 * 120.00018 * 179.97438 * 2 1 3 13 13 O 1.21284 * 119.99869 * 179.97438 * 12 2 1 14 14 C 1.50701 * 119.99815 * 0.02562 * 12 2 1 15 15 S 1.81404 * 109.46831 * 179.97438 * 14 12 2 16 16 C 1.76201 * 102.99787 * 179.97438 * 15 14 12 17 17 C 1.38975 * 120.08044 * 180.02562 * 16 15 14 18 18 C 1.38076 * 119.91873 * 180.02562 * 17 16 15 19 19 C 1.38298 * 120.08322 * 0.02562 * 18 17 16 20 20 S 1.76200 * 119.92353 * 179.97438 * 19 18 17 21 21 C 1.81404 * 104.45035 * 89.99393 * 20 19 18 22 22 O 1.42107 * 104.27494 * 333.92502 * 20 19 18 23 23 O 1.42102 * 104.28011 * 206.06621 * 20 19 18 24 24 C 1.38305 * 120.16015 * 0.26550 * 19 18 17 25 25 C 1.38084 * 120.07773 * 359.45848 * 24 19 18 26 26 H 1.08995 * 109.47486 * 270.00612 * 1 2 3 27 27 H 1.08997 * 109.47214 * 30.00681 * 1 2 3 28 28 H 1.09000 * 109.47228 * 150.00132 * 1 2 3 29 29 H 1.09007 * 109.46751 * 29.99339 * 3 2 1 30 30 H 1.08994 * 109.47750 * 150.00020 * 3 2 1 31 31 H 0.97004 * 119.99801 * 180.02562 * 7 6 4 32 32 H 1.09004 * 109.46981 * 60.00292 * 14 12 2 33 33 H 1.08997 * 109.47237 * 299.99524 * 14 12 2 34 34 H 1.08000 * 120.03761 * 0.02562 * 17 16 15 35 35 H 1.08002 * 119.96066 * 179.97438 * 18 17 16 36 36 H 1.09002 * 109.47124 * 60.00198 * 21 20 19 37 37 H 1.09001 * 109.46975 * 300.00319 * 21 20 19 38 38 H 1.09004 * 109.47147 * 180.02562 * 21 20 19 39 39 H 1.08006 * 119.96075 * 179.73274 * 24 19 18 40 40 H 1.08005 * 120.03743 * 180.27242 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5526 3.6185 -0.6732 8 14 3.4380 3.4167 -3.4341 9 1 2.8619 2.4156 -4.3674 10 1 2.7999 4.7371 -3.6681 11 1 4.9006 3.5256 -3.6667 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3853 -2.4723 0.0005 15 16 2.5642 -3.8511 0.0005 16 6 1.5168 -5.2680 0.0013 17 6 2.0698 -6.5430 0.0020 18 6 1.2459 -7.6510 0.0021 19 6 -0.1281 -7.4933 0.0009 20 16 -1.1755 -8.9101 0.0003 21 6 -1.4459 -9.2739 1.7568 22 8 -0.3886 -9.9274 -0.6042 23 8 -2.3781 -8.4567 -0.6059 24 6 -0.6820 -6.2260 -0.0059 25 6 0.1357 -5.1133 -0.0002 26 1 -0.3634 0.0001 1.0276 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1384 0.5138 31 1 4.0289 4.4447 -0.8505 32 1 0.7590 -2.5303 -0.8898 33 1 0.7584 -2.5299 0.8903 34 1 3.1426 -6.6670 0.0025 35 1 1.6749 -8.6422 0.0022 36 1 -1.9201 -8.4176 2.2364 37 1 -0.4887 -9.4756 2.2376 38 1 -2.0911 -10.1473 1.8518 39 1 -1.7554 -6.1065 -0.0112 40 1 -0.2976 -4.1240 -0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060393931.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:58 Heat of formation + Delta-G solvation = -67.414116 kcal Electronic energy + Delta-G solvation = -24086.347227 eV Core-core repulsion = 20313.437990 eV Total energy + Delta-G solvation = -3772.909236 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 343.074 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.36339 -39.12166 -37.45364 -36.28736 -35.04875 -32.79920 -31.93904 -31.53813 -30.14325 -29.92503 -27.56925 -25.85064 -23.86692 -23.33734 -22.69284 -19.44591 -19.08718 -18.29383 -17.43947 -16.74358 -16.60156 -16.56397 -16.40699 -15.63426 -15.34667 -15.20437 -14.89591 -14.65315 -14.21460 -13.85401 -13.84829 -13.66524 -13.62696 -13.23279 -12.92192 -12.58636 -12.43277 -12.34986 -12.33680 -12.12165 -12.02458 -11.73195 -11.52022 -11.31590 -11.06066 -10.95251 -10.68594 -10.40792 -10.29592 -10.24460 -9.72638 -9.44624 -9.27861 -8.52135 -7.87805 -7.69164 -6.13155 -4.18467 -0.33335 0.38305 0.95060 1.12544 2.15435 2.50368 2.99129 3.07724 3.25061 3.33240 3.37048 3.56790 3.70415 3.72794 4.30085 4.30904 4.37362 4.49638 4.53302 4.75373 4.86114 4.87368 5.04195 5.10907 5.16007 5.21948 5.23203 5.46255 5.54286 5.61665 5.70941 5.73954 5.82235 6.04283 6.40504 6.84911 7.28045 7.35064 7.82036 8.11021 8.14606 8.69251 8.88026 9.47042 10.95062 Molecular weight = 343.07amu Principal moments of inertia in cm(-1) A = 0.025853 B = 0.002016 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.797341 B =13884.144914 C =14035.629100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.594 5.594 3 C 0.245 3.755 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.521 3.479 13 O -0.522 6.522 14 C -0.155 4.155 15 S -0.003 6.003 16 C -0.046 4.046 17 C -0.126 4.126 18 C -0.003 4.003 19 C -0.678 4.678 20 S 2.504 3.496 21 C -0.651 4.651 22 O -0.940 6.940 23 O -0.940 6.940 24 C 0.000 4.000 25 C -0.163 4.163 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.264 0.736 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.138 0.862 35 H 0.145 0.855 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.143 0.857 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.074 -24.061 7.117 27.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.326 5.326 3 C 0.127 3.873 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.305 3.695 13 O -0.399 6.399 14 C -0.306 4.306 15 S 0.246 5.754 16 C -0.160 4.160 17 C -0.151 4.151 18 C -0.025 4.025 19 C -0.769 4.769 20 S 2.684 3.316 21 C -0.800 4.800 22 O -0.937 6.937 23 O -0.937 6.937 24 C -0.021 4.021 25 C -0.189 4.189 26 H 0.067 0.933 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.156 0.844 35 H 0.163 0.837 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.161 0.839 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.362 -23.998 6.448 26.923 hybrid contribution -1.012 0.964 -0.329 1.436 sum -11.374 -23.034 6.119 26.408 Atomic orbital electron populations 1.21717 0.81126 1.02892 1.00729 1.48102 1.06365 1.07369 1.70771 1.19387 0.92617 0.77481 0.97848 1.21429 1.36873 1.06418 0.92102 0.92353 1.24944 0.95208 0.96327 0.97611 1.69937 1.38210 1.14293 1.30753 0.86416 0.78189 0.78330 0.84342 1.19773 1.20888 1.20768 1.19238 0.87757 0.83851 0.78688 1.90738 1.13134 1.86358 1.49636 1.24091 1.02559 0.96620 1.07326 1.86519 1.08042 0.92286 1.88558 1.22729 0.97410 0.99210 0.96693 1.20859 1.00563 0.90226 1.03460 1.20833 0.91225 0.99478 0.90928 1.30378 1.08692 1.16240 1.21632 1.05008 0.74547 0.74488 0.77604 1.30237 1.12220 1.12230 1.25357 1.93585 1.69960 1.56885 1.73263 1.93586 1.45869 1.81049 1.73199 1.20814 1.00225 0.90575 0.90512 1.21334 0.92140 0.99783 1.05629 0.93327 0.90212 0.92563 0.94601 0.93595 0.92642 0.86646 0.86817 0.84373 0.83746 0.84971 0.84950 0.85112 0.83917 0.84901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.24 59.84 0.61 1.74 16 2 N -0.59 -11.83 2.86 -182.96 -0.52 -12.35 16 3 C 0.25 6.19 5.16 -5.19 -0.03 6.16 16 4 C -0.53 -14.64 9.39 -34.44 -0.32 -14.96 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 8 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 12 C 0.52 10.18 7.69 -10.98 -0.08 10.10 16 13 O -0.52 -12.62 15.44 5.55 0.09 -12.53 16 14 C -0.15 -2.08 3.37 36.01 0.12 -1.96 16 15 S 0.00 -0.05 21.06 -107.50 -2.26 -2.31 16 16 C -0.05 -0.52 6.11 -39.04 -0.24 -0.76 16 17 C -0.13 -1.26 9.79 -39.37 -0.39 -1.65 16 18 C 0.00 -0.03 9.46 -39.62 -0.37 -0.40 16 19 C -0.68 -5.68 5.66 -39.53 -0.22 -5.90 16 20 S 2.50 17.28 5.80 -107.50 -0.62 16.66 16 21 C -0.65 -1.78 10.80 101.05 1.09 -0.69 16 22 O -0.94 -9.47 17.12 -57.54 -0.98 -10.45 16 23 O -0.94 -9.55 17.11 -57.54 -0.98 -10.53 16 24 C 0.00 0.00 9.46 -39.61 -0.37 -0.38 16 25 C -0.16 -1.61 9.36 -39.37 -0.37 -1.98 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 28 H 0.06 0.62 6.44 -51.93 -0.33 0.28 16 29 H 0.04 0.91 8.07 -51.92 -0.42 0.49 16 30 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.12 1.33 7.01 -51.92 -0.36 0.97 16 33 H 0.11 1.19 7.72 -51.93 -0.40 0.79 16 34 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.14 0.93 7.56 -52.49 -0.40 0.54 16 36 H 0.13 0.20 8.14 -51.92 -0.42 -0.23 16 37 H 0.13 0.19 8.14 -51.92 -0.42 -0.23 16 38 H 0.13 0.18 8.14 -51.92 -0.42 -0.24 16 39 H 0.14 0.95 7.56 -52.48 -0.40 0.56 16 40 H 0.13 1.09 5.88 -52.48 -0.31 0.78 16 LS Contribution 367.97 15.07 5.55 5.55 Total: -1.00 -38.22 367.97 -9.79 -48.01 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -5.08 Total: -4.22 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -0.67 Total: -9.05 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.21 Total: -37.66 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -1.88 Total: -33.52 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 17.23 SS G_CDS: -2.89 Total: 14.34 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -38.22 -9.79 -48.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060393931.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.406 kcal (2) G-P(sol) polarization free energy of solvation -38.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds