Wall clock time and date at job start Tue Mar 31 2020 05:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47051 * 2 1 4 4 C 1.52997 * 109.47030 * 120.00193 * 2 1 3 5 5 C 1.53002 * 109.46853 * 174.99976 * 4 2 1 6 6 N 1.46498 * 109.47041 * 179.97438 * 5 4 2 7 7 C 1.38289 * 119.42310 * 90.00466 * 6 5 4 8 8 N 1.31072 * 130.30157 * 0.02562 * 7 6 5 9 9 N 1.40038 * 108.09135 * 180.02562 * 8 7 6 10 10 C 1.36914 * 126.28750 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00272 * 180.02562 * 10 9 8 12 12 C 1.38753 * 120.00374 * 0.02562 * 10 9 8 13 13 N 1.31502 * 119.99653 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00348 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46957 * 59.99971 * 14 12 10 16 16 H 1.48493 * 109.47258 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46769 * 300.00211 * 14 12 10 18 18 C 1.34780 * 107.42308 * 359.97438 * 9 8 7 19 19 O 1.21711 * 126.15060 * 180.02562 * 18 9 8 20 20 N 1.34962 * 107.70562 * 0.02562 * 18 9 8 21 21 C 1.39401 * 131.09815 * 179.97438 * 20 18 9 22 22 C 1.38647 * 121.01239 * 0.03453 * 21 20 18 23 23 C 1.38108 * 119.83070 * 179.97438 * 22 21 20 24 24 C 1.38590 * 120.58245 * 359.97438 * 23 22 21 25 25 C 1.37926 * 120.36020 * 0.02562 * 24 23 22 26 26 C 1.39377 * 119.58519 * 0.25521 * 25 24 23 27 27 C 1.34794 * 119.42577 * 270.02041 * 6 5 4 28 28 O 1.21609 * 120.53692 * 0.02562 * 27 6 5 29 29 H 1.09005 * 109.47456 * 299.99975 * 1 2 3 30 30 H 1.09001 * 109.47643 * 59.99977 * 1 2 3 31 31 H 1.09004 * 109.47285 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47084 * 240.00365 * 2 1 3 33 33 H 1.09005 * 109.46970 * 59.99728 * 3 2 1 34 34 H 1.09002 * 109.47602 * 179.97438 * 3 2 1 35 35 H 1.09006 * 109.47334 * 300.00672 * 3 2 1 36 36 H 1.08999 * 109.47453 * 55.00050 * 4 2 1 37 37 H 1.08997 * 109.47190 * 294.99889 * 4 2 1 38 38 H 1.09009 * 109.46928 * 60.00372 * 5 4 2 39 39 H 1.09002 * 109.47587 * 300.00097 * 5 4 2 40 40 H 0.97006 * 119.99587 * 179.97438 * 13 12 10 41 41 H 1.08002 * 120.08365 * 0.02562 * 22 21 20 42 42 H 1.08001 * 119.70701 * 179.97438 * 23 22 21 43 43 H 1.07997 * 119.82294 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.20437 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1879 6 7 4.0532 -1.5212 2.3843 7 6 4.1808 -2.8981 2.3698 8 7 3.9288 -3.7629 1.4177 9 7 4.2227 -5.0429 1.9039 10 6 4.0935 -6.2200 1.2168 11 1 4.3505 -7.1546 1.6934 12 6 3.6324 -6.2126 -0.0919 13 7 3.3199 -5.0748 -0.6724 14 14 3.4554 -7.8188 -1.0290 15 1 2.4996 -8.7046 -0.3169 16 1 2.9484 -7.5406 -2.3967 17 1 4.7781 -8.4879 -1.1185 18 6 4.6562 -4.9030 3.1724 19 8 5.0045 -5.8020 3.9153 20 7 4.6346 -3.5870 3.4708 21 6 4.9795 -2.9061 4.6373 22 6 5.4386 -3.5885 5.7535 23 6 5.7740 -2.8893 6.8963 24 6 5.6564 -1.5090 6.9385 25 6 5.2014 -0.8142 5.8373 26 6 4.8543 -1.5093 4.6802 27 6 4.3700 -0.8030 3.4801 28 8 4.2528 0.4074 3.4807 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.6765 1.9563 0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6765 1.9564 -0.8900 36 1 1.6054 -1.7198 1.2951 37 1 1.7516 -0.1584 2.1369 38 1 3.9994 0.1676 1.1421 39 1 3.8532 -1.3939 0.3001 40 1 2.9979 -5.0695 -1.5874 41 1 5.5345 -4.6639 5.7291 42 1 6.1310 -3.4229 7.7648 43 1 5.9217 -0.9746 7.8387 44 1 5.1104 0.2614 5.8731 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064860440.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:28 Heat of formation + Delta-G solvation = 50.617128 kcal Electronic energy + Delta-G solvation = -30604.370524 eV Core-core repulsion = 26524.227192 eV Total energy + Delta-G solvation = -4080.143332 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.25131 -40.01411 -38.60740 -36.85199 -36.31466 -35.47198 -34.23261 -32.85052 -31.34758 -30.21234 -29.32022 -28.66697 -27.07305 -25.73281 -24.72670 -23.13193 -22.91061 -22.34099 -20.42750 -19.86682 -19.14788 -18.78542 -17.67823 -16.86335 -16.47657 -16.21021 -15.57721 -15.18320 -15.02911 -14.77524 -14.64277 -14.16239 -14.09730 -14.00831 -13.77202 -13.67053 -13.45238 -12.97222 -12.66414 -12.30382 -12.09166 -12.04330 -11.87687 -11.65707 -11.51071 -11.49452 -11.17223 -11.07335 -10.90309 -10.84898 -10.58987 -10.57595 -10.47258 -10.33995 -9.99312 -9.81668 -9.09633 -9.08943 -8.93494 -8.26342 -7.43128 -6.58760 -4.23952 0.78538 1.26752 2.42843 2.44598 2.61402 3.03224 3.09998 3.12883 3.14908 3.59971 3.87875 4.05546 4.14118 4.57184 4.74873 4.89122 4.96808 4.97565 5.02781 5.05502 5.23179 5.26281 5.38328 5.45858 5.53586 5.59789 5.71191 5.78786 5.81549 5.86765 5.92618 5.98123 6.01381 6.13527 6.17416 6.22271 6.31950 6.43182 6.45811 6.50712 6.56090 6.61836 6.74266 6.95870 7.15810 7.47403 7.71884 8.04855 8.22154 8.67016 9.01893 9.41138 10.41762 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.007597 B = 0.005795 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3684.643981 B = 4830.673889 C = 8212.236037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.126 4.126 5 C 0.115 3.885 6 N -0.499 5.499 7 C 0.363 3.637 8 N -0.189 5.189 9 N -0.226 5.226 10 C -0.306 4.306 11 H 0.127 0.873 12 C 0.045 3.955 13 N -0.804 5.804 14 Si 0.939 3.061 15 H -0.267 1.267 16 H -0.278 1.278 17 H -0.267 1.267 18 C 0.573 3.427 19 O -0.580 6.580 20 N -0.493 5.493 21 C 0.220 3.780 22 C -0.148 4.148 23 C -0.062 4.062 24 C -0.157 4.157 25 C -0.029 4.029 26 C -0.182 4.182 27 C 0.570 3.430 28 O -0.520 6.520 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.274 0.726 41 H 0.155 0.845 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.557 9.886 5.136 11.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.206 4.206 4 C -0.165 4.165 5 C -0.006 4.006 6 N -0.229 5.229 7 C 0.005 3.995 8 N -0.022 5.022 9 N -0.031 5.031 10 C -0.435 4.435 11 H 0.144 0.856 12 C -0.168 4.168 13 N -0.435 5.435 14 Si 0.763 3.237 15 H -0.192 1.192 16 H -0.203 1.203 17 H -0.192 1.192 18 C 0.278 3.722 19 O -0.460 6.460 20 N -0.214 5.214 21 C 0.122 3.878 22 C -0.168 4.168 23 C -0.081 4.081 24 C -0.176 4.176 25 C -0.048 4.048 26 C -0.188 4.188 27 C 0.361 3.639 28 O -0.396 6.396 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.084 0.916 41 H 0.173 0.827 42 H 0.151 0.849 43 H 0.150 0.850 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.821 9.787 4.334 10.735 hybrid contribution 0.095 -0.663 0.153 0.687 sum -0.726 9.124 4.487 10.194 Atomic orbital electron populations 1.21803 0.95227 1.01876 1.01262 1.21007 0.95768 0.96003 0.98254 1.21906 1.01217 0.96021 1.01413 1.21938 0.94631 1.01659 0.98254 1.21862 0.95000 0.97934 0.85760 1.44170 1.62086 1.01018 1.15578 1.20439 1.06931 0.85529 0.86592 1.78529 1.21779 0.87550 1.14296 1.44404 1.47786 1.03379 1.07552 1.19637 1.46630 0.81563 0.95620 0.85593 1.25488 0.95514 0.99272 0.96494 1.70158 1.35116 1.24997 1.13196 0.85811 0.79391 0.80181 0.78314 1.19215 1.20258 1.19215 1.16134 0.90168 0.80281 0.85630 1.90831 1.60029 1.40944 1.54192 1.43409 1.57958 1.08807 1.11236 1.17837 0.94392 0.89890 0.85712 1.21238 1.01777 1.02392 0.91421 1.21263 0.95550 0.94121 0.97127 1.21102 1.03438 0.94289 0.98817 1.20950 0.93363 1.00319 0.90156 1.19475 1.11462 0.91077 0.96807 1.17895 0.77334 0.86658 0.82016 1.90775 1.54137 1.12256 1.82417 0.92990 0.92870 0.92494 0.90520 0.92723 0.92455 0.92984 0.90786 0.91849 0.88781 0.88177 0.91563 0.82737 0.84871 0.85015 0.84029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.19 37.16 0.34 -1.34 16 2 C -0.09 -1.16 2.92 -90.62 -0.26 -1.43 16 3 C -0.15 -1.67 8.95 37.16 0.33 -1.34 16 4 C -0.13 -1.93 5.01 -26.73 -0.13 -2.06 16 5 C 0.12 1.91 5.04 -4.04 -0.02 1.89 16 6 N -0.50 -9.54 2.65 -117.67 -0.31 -9.85 16 7 C 0.36 8.10 8.27 -317.90 -2.63 5.47 16 8 N -0.19 -4.72 10.06 30.45 0.31 -4.42 16 9 N -0.23 -6.05 3.68 -15.37 -0.06 -6.10 16 10 C -0.31 -8.15 10.10 -15.09 -0.15 -8.30 16 11 H 0.13 3.26 7.81 -52.48 -0.41 2.85 16 12 C 0.04 1.12 5.50 -17.50 -0.10 1.02 16 13 N -0.80 -20.56 11.82 55.48 0.66 -19.90 16 14 Si 0.94 18.90 29.55 -169.99 -5.02 13.88 16 15 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 16 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 17 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 18 C 0.57 14.73 8.54 -86.75 -0.74 13.99 16 19 O -0.58 -15.49 15.82 5.18 0.08 -15.41 16 20 N -0.49 -11.14 2.96 -65.19 -0.19 -11.33 16 21 C 0.22 4.22 6.63 -83.49 -0.55 3.67 16 22 C -0.15 -2.48 9.56 -39.48 -0.38 -2.86 16 23 C -0.06 -0.77 10.02 -39.50 -0.40 -1.16 16 24 C -0.16 -1.79 10.03 -39.57 -0.40 -2.19 16 25 C -0.03 -0.39 9.64 -39.27 -0.38 -0.77 16 26 C -0.18 -3.14 5.88 -104.95 -0.62 -3.75 16 27 C 0.57 10.47 7.64 -12.51 -0.10 10.38 16 28 O -0.52 -9.63 16.07 5.27 0.08 -9.55 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.65 6.56 -51.93 -0.34 0.31 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.09 1.42 5.82 -51.92 -0.30 1.12 16 39 H 0.10 1.75 7.81 -51.93 -0.41 1.34 16 40 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 41 H 0.16 2.86 6.19 -52.49 -0.32 2.54 16 42 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 43 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 44 H 0.14 1.69 7.75 -52.49 -0.41 1.28 16 LS Contribution 368.36 15.07 5.55 5.55 Total: -1.00 -30.27 368.36 -10.64 -40.90 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -5.55 Total: 5.01 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: -6.18 Total: 11.22 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: 0.40 Total: -51.60 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: 0.17 Total: -24.95 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.27 -10.64 -40.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064860440.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.521 kcal (2) G-P(sol) polarization free energy of solvation -30.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds