Wall clock time and date at job start Tue Mar 31 2020 06:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47096 * 2 1 4 4 C 1.50708 * 109.46917 * 119.99726 * 2 1 3 5 5 H 1.08003 * 119.99658 * 120.00670 * 4 2 1 6 6 C 1.37874 * 120.00209 * 299.99977 * 4 2 1 7 7 N 1.31518 * 119.99552 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 119.99990 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47389 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47343 * 120.00080 * 8 6 4 11 11 H 1.48510 * 109.47170 * 240.00079 * 8 6 4 12 12 S 1.81396 * 109.47178 * 239.99811 * 2 1 3 13 13 C 1.76195 * 103.00053 * 70.09934 * 12 2 1 14 14 C 1.38773 * 120.10423 * 5.25733 * 13 12 2 15 15 C 1.38205 * 119.98959 * 180.27330 * 14 13 12 16 16 C 1.38292 * 120.19611 * 359.72406 * 15 14 13 17 17 C 1.38261 * 120.20562 * 359.97438 * 16 15 14 18 18 C 1.38627 * 120.01014 * 0.02562 * 17 16 15 19 19 N 1.40181 * 120.09816 * 179.97438 * 18 17 16 20 20 C 1.34780 * 119.99984 * 24.76626 * 19 18 17 21 21 O 1.21584 * 119.99883 * 5.69501 * 20 19 18 22 22 N 1.34779 * 119.99903 * 185.69703 * 20 19 18 23 23 C 1.39381 * 119.99632 * 185.04751 * 22 20 19 24 24 C 1.39045 * 119.69717 * 174.95641 * 23 22 20 25 25 C 1.38348 * 119.10344 * 179.69766 * 24 23 22 26 26 C 1.38842 * 118.49378 * 0.54149 * 25 24 23 27 27 C 1.38062 * 119.31274 * 359.45147 * 26 25 24 28 28 N 1.31938 * 120.84871 * 0.28523 * 27 26 25 29 29 H 1.09007 * 109.47186 * 185.08431 * 1 2 3 30 30 H 1.09003 * 109.47668 * 305.08469 * 1 2 3 31 31 H 1.08999 * 109.47144 * 65.08889 * 1 2 3 32 32 H 0.97001 * 119.99280 * 180.02562 * 7 6 4 33 33 H 1.08002 * 120.00577 * 359.97438 * 14 13 12 34 34 H 1.07998 * 119.90380 * 179.74689 * 15 14 13 35 35 H 1.08003 * 119.89408 * 180.02562 * 16 15 14 36 36 H 1.07999 * 119.99431 * 180.02562 * 17 16 15 37 37 H 0.97003 * 120.00206 * 204.76824 * 19 18 17 38 38 H 0.96997 * 120.00257 * 5.03993 * 22 20 19 39 39 H 1.08005 * 120.44667 * 359.95362 * 24 23 22 40 40 H 1.07998 * 120.75553 * 180.30047 * 25 24 23 41 41 H 1.08004 * 120.34328 * 179.73472 * 26 25 24 42 42 H 1.08003 * 119.57883 * 180.30047 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8297 2.6033 8 14 2.3224 -1.1194 4.0080 9 1 3.1473 -2.2863 3.6039 10 1 3.1471 -0.1857 4.8161 11 1 1.1676 -1.5865 4.8166 12 16 2.1346 -0.8552 -1.4811 13 6 1.7158 0.2586 -2.7806 14 6 1.1732 1.5011 -2.4846 15 6 0.8403 2.3706 -3.5060 16 6 1.0515 2.0088 -4.8239 17 6 1.5973 0.7753 -5.1278 18 6 1.9344 -0.1034 -4.1100 19 7 2.4874 -1.3547 -4.4160 20 6 3.1463 -1.5343 -5.5780 21 8 3.3513 -0.5878 -6.3131 22 7 3.5780 -2.7630 -5.9249 23 6 4.3498 -2.9320 -7.0732 24 6 4.8798 -4.1829 -7.3690 25 6 5.6389 -4.3382 -8.5152 26 6 5.8521 -3.2298 -9.3236 27 6 5.2953 -2.0173 -8.9689 28 7 4.5710 -1.9004 -7.8723 29 1 -0.3634 -1.0237 0.0911 30 1 -0.3634 0.5907 0.8409 31 1 -0.3633 0.4329 -0.9320 32 1 0.7086 1.1613 3.4844 33 1 1.0067 1.7867 -1.4564 34 1 0.4144 3.3356 -3.2742 35 1 0.7899 2.6922 -5.6183 36 1 1.7611 0.4965 -6.1582 37 1 2.3958 -2.0913 -3.7915 38 1 3.3516 -3.5297 -5.3756 39 1 4.6979 -5.0230 -6.7150 40 1 6.0593 -5.2990 -8.7732 41 1 6.4437 -3.3162 -10.2231 42 1 5.4544 -1.1534 -9.5972 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065453236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:27 Heat of formation + Delta-G solvation = 54.972199 kcal Electronic energy + Delta-G solvation = -26042.158138 eV Core-core repulsion = 22307.237865 eV Total energy + Delta-G solvation = -3734.920273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 343.110 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.15766 -39.90383 -38.24018 -35.20515 -34.68168 -34.11827 -32.59832 -31.10131 -30.53457 -29.93189 -28.80250 -25.40190 -24.33871 -23.73946 -22.71111 -22.24747 -21.31252 -20.66329 -18.68217 -18.45822 -17.47341 -16.58005 -16.24559 -16.13296 -15.90837 -15.73492 -15.19633 -14.74436 -14.58639 -14.31927 -14.12708 -13.90385 -13.48795 -13.41450 -13.27774 -12.75954 -12.63213 -12.26734 -11.98053 -11.75583 -11.42888 -11.14209 -11.07854 -11.04541 -10.60226 -10.51230 -10.38778 -10.20612 -10.08260 -9.93094 -9.46244 -9.23500 -9.08926 -8.97621 -8.56443 -8.54409 -7.90526 -6.56958 -6.26170 -4.34914 0.87734 1.09789 1.62264 1.76997 2.19175 2.50065 3.05702 3.17980 3.26269 3.30732 3.55718 3.73862 3.81720 4.17487 4.26121 4.34977 4.56898 4.78949 4.84837 4.95553 5.06644 5.30664 5.37998 5.42400 5.58945 5.65045 5.83083 5.84740 5.91653 6.03528 6.24297 6.31729 6.54102 6.57026 6.61485 6.70085 6.73308 6.75459 6.79254 6.92933 7.28399 7.35597 7.55994 7.58490 7.72546 7.95452 7.99167 8.43318 8.64003 9.29454 10.80292 Molecular weight = 343.11amu Principal moments of inertia in cm(-1) A = 0.015132 B = 0.002597 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.989898 B =10777.519880 C =12350.648891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.101 3.899 3 H 0.052 0.948 4 C -0.511 4.511 5 H 0.067 0.933 6 C 0.071 3.929 7 N -0.885 5.885 8 Si 0.906 3.094 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.281 1.281 12 S -0.178 6.178 13 C -0.093 4.093 14 C -0.113 4.113 15 C -0.122 4.122 16 C -0.120 4.120 17 C -0.119 4.119 18 C 0.168 3.832 19 N -0.670 5.670 20 C 0.695 3.305 21 O -0.511 6.511 22 N -0.668 5.668 23 C 0.382 3.618 24 C -0.211 4.211 25 C -0.047 4.047 26 C -0.212 4.212 27 C 0.134 3.866 28 N -0.474 5.474 29 H 0.041 0.959 30 H 0.092 0.908 31 H 0.021 0.979 32 H 0.266 0.734 33 H 0.138 0.862 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.145 0.855 37 H 0.410 0.590 38 H 0.416 0.584 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.396 -7.785 -19.750 21.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.026 4.026 3 H 0.070 0.930 4 C -0.551 4.551 5 H 0.085 0.915 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.733 3.267 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 S 0.069 5.931 13 C -0.209 4.209 14 C -0.137 4.137 15 C -0.142 4.142 16 C -0.142 4.142 17 C -0.140 4.140 18 C 0.067 3.933 19 N -0.318 5.318 20 C 0.395 3.605 21 O -0.381 6.381 22 N -0.316 5.316 23 C 0.150 3.850 24 C -0.235 4.235 25 C -0.073 4.073 26 C -0.234 4.234 27 C -0.024 4.024 28 N -0.188 5.188 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.156 0.844 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.162 0.838 37 H 0.247 0.753 38 H 0.252 0.748 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.683 -7.131 -19.931 21.680 hybrid contribution -0.113 -0.790 1.404 1.615 sum 4.570 -7.921 -18.528 20.662 Atomic orbital electron populations 1.22115 0.96196 1.01358 1.00362 1.21095 0.95615 0.97344 0.88564 0.92991 1.20654 1.32593 1.13237 0.88583 0.91480 1.24890 0.94639 0.94951 0.98877 1.69883 1.35816 1.22479 1.24077 0.86297 0.78701 0.79627 0.82043 1.19513 1.20700 1.20711 1.84961 1.75530 1.30880 1.01764 1.21667 1.05207 0.98941 0.95059 1.21275 0.99537 0.92357 1.00554 1.21026 1.01105 0.99452 0.92638 1.20932 1.00593 0.96369 0.96270 1.21226 0.99311 0.94121 0.99374 1.16946 0.99205 0.85625 0.91548 1.42622 1.56429 1.12910 1.19790 1.15915 0.79133 0.83251 0.82196 1.91008 1.57623 1.38241 1.51217 1.42707 1.53673 1.09791 1.25476 1.18167 0.90258 0.89883 0.86702 1.21429 1.04150 0.96858 1.01035 1.21325 0.94430 0.99093 0.92480 1.22053 1.04643 0.94270 1.02412 1.22708 0.90852 0.97051 0.91821 1.67691 1.16170 1.30477 1.04444 0.94023 0.88987 0.96050 0.92446 0.84436 0.86208 0.86202 0.83762 0.75343 0.74787 0.84614 0.84562 0.84841 0.82490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.40 37.15 0.31 -2.91 16 2 C 0.10 2.42 1.97 -27.88 -0.06 2.37 16 3 H 0.05 1.34 6.87 -51.92 -0.36 0.98 16 4 C -0.51 -13.40 8.58 -34.44 -0.30 -13.69 16 5 H 0.07 1.77 7.71 -52.48 -0.40 1.37 16 6 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 7 N -0.89 -23.73 11.37 55.43 0.63 -23.10 16 8 Si 0.91 20.36 29.54 -169.99 -5.02 15.34 16 9 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 12 S -0.18 -3.68 19.93 -107.50 -2.14 -5.82 16 13 C -0.09 -1.78 6.00 -38.91 -0.23 -2.02 16 14 C -0.11 -2.10 8.03 -39.40 -0.32 -2.42 16 15 C -0.12 -1.95 10.04 -39.57 -0.40 -2.35 16 16 C -0.12 -1.84 10.04 -39.55 -0.40 -2.24 16 17 C -0.12 -2.00 8.72 -39.43 -0.34 -2.35 16 18 C 0.17 2.96 6.44 -83.42 -0.54 2.43 16 19 N -0.67 -10.18 5.19 -14.07 -0.07 -10.25 16 20 C 0.69 10.57 8.32 -86.91 -0.72 9.84 16 21 O -0.51 -9.37 11.78 5.29 0.06 -9.31 16 22 N -0.67 -7.67 5.39 -15.81 -0.09 -7.76 16 23 C 0.38 4.55 7.42 -154.72 -1.15 3.40 16 24 C -0.21 -1.78 9.94 -39.24 -0.39 -2.17 16 25 C -0.05 -0.34 10.17 -39.32 -0.40 -0.74 16 26 C -0.21 -1.61 10.11 -39.42 -0.40 -2.01 16 27 C 0.13 1.37 11.17 -17.57 -0.20 1.17 16 28 N -0.47 -6.53 7.89 -12.37 -0.10 -6.63 16 29 H 0.04 0.94 8.14 -51.92 -0.42 0.52 16 30 H 0.09 2.28 6.22 -51.93 -0.32 1.96 16 31 H 0.02 0.43 6.07 -51.93 -0.32 0.12 16 32 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 33 H 0.14 2.73 4.94 -52.49 -0.26 2.47 16 34 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 36 H 0.14 2.48 5.79 -52.49 -0.30 2.18 16 37 H 0.41 5.53 7.67 -40.82 -0.31 5.22 16 38 H 0.42 3.19 8.73 -40.82 -0.36 2.84 16 39 H 0.14 0.77 8.06 -52.48 -0.42 0.34 16 40 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 42 H 0.16 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 361.87 15.07 5.45 5.45 Total: -1.00 -31.88 361.87 -11.61 -43.50 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -4.73 Total: 10.51 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -5.61 Total: -11.92 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.37 Total: -47.74 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.06 Total: -9.31 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -2.14 Total: -5.82 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.88 -11.61 -43.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065453236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.471 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds