Wall clock time and date at job start Tue Mar 31 2020 06:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46900 * 2 1 4 4 C 1.50699 * 109.47093 * 240.00262 * 2 1 3 5 5 H 1.08001 * 119.99697 * 239.99544 * 4 2 1 6 6 C 1.37873 * 120.00228 * 59.99612 * 4 2 1 7 7 N 1.31511 * 120.00010 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99866 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47174 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46587 * 120.00087 * 8 6 4 11 11 H 1.48496 * 109.47297 * 239.99672 * 8 6 4 12 12 S 1.81398 * 109.47172 * 119.99690 * 2 1 3 13 13 C 1.76198 * 103.00158 * 288.13888 * 12 2 1 14 14 C 1.38776 * 120.10157 * 355.16371 * 13 12 2 15 15 C 1.38215 * 119.98518 * 180.32149 * 14 13 12 16 16 C 1.38293 * 120.19639 * 359.68192 * 15 14 13 17 17 C 1.38267 * 120.20441 * 0.02562 * 16 15 14 18 18 C 1.38628 * 120.01331 * 0.02562 * 17 16 15 19 19 N 1.40177 * 120.10109 * 179.97438 * 18 17 16 20 20 C 1.34776 * 120.00156 * 24.65290 * 19 18 17 21 21 O 1.21591 * 119.99415 * 5.59878 * 20 19 18 22 22 N 1.34775 * 120.00283 * 185.86859 * 20 19 18 23 23 C 1.39377 * 119.99917 * 174.67401 * 22 20 19 24 24 C 1.39050 * 119.69652 * 185.06979 * 23 22 20 25 25 C 1.38354 * 119.09820 * 179.75291 * 24 23 22 26 26 C 1.38839 * 118.49599 * 0.51046 * 25 24 23 27 27 C 1.38054 * 119.31761 * 359.73340 * 26 25 24 28 28 N 1.31950 * 120.84807 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.47483 * 303.79742 * 1 2 3 30 30 H 1.09001 * 109.47321 * 63.80310 * 1 2 3 31 31 H 1.09002 * 109.46775 * 183.79924 * 1 2 3 32 32 H 0.97005 * 119.99761 * 179.97438 * 7 6 4 33 33 H 1.07993 * 120.01034 * 0.02562 * 14 13 12 34 34 H 1.07996 * 119.90002 * 179.70187 * 15 14 13 35 35 H 1.07992 * 119.89296 * 180.02562 * 16 15 14 36 36 H 1.07998 * 119.98649 * 180.02562 * 17 16 15 37 37 H 0.97006 * 120.00194 * 204.66167 * 19 18 17 38 38 H 0.96999 * 119.99988 * 354.67866 * 22 20 19 39 39 H 1.08001 * 120.44962 * 359.97438 * 24 23 22 40 40 H 1.08002 * 120.74863 * 180.27189 * 25 24 23 41 41 H 1.08003 * 120.34181 * 179.70261 * 26 25 24 42 42 H 1.08002 * 119.58207 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 3.1475 -2.2862 -3.6038 10 1 1.1678 -1.5866 -4.8164 11 1 3.1472 -0.1858 -4.8161 12 16 2.1347 -0.8550 1.4812 13 6 1.7629 0.2820 2.7748 14 6 1.2392 1.5315 2.4741 15 6 0.9547 2.4240 3.4903 16 6 1.1842 2.0737 4.8083 17 6 1.7001 0.8286 5.1174 18 6 1.9896 -0.0729 4.1048 19 7 2.5132 -1.3354 4.4161 20 6 2.2871 -1.8784 5.6287 21 8 1.5461 -1.3215 6.4155 22 7 2.8866 -3.0359 5.9711 23 6 2.7418 -3.5403 7.2623 24 6 3.4472 -4.6773 7.6408 25 6 3.2981 -5.1644 8.9272 26 6 2.4371 -4.5011 9.7910 27 6 1.7643 -3.3805 9.3464 28 7 1.9300 -2.9360 8.1152 29 1 -0.3634 0.5716 0.8540 30 1 -0.3634 0.4537 -0.9221 31 1 -0.3633 -1.0254 0.0681 32 1 0.7086 1.1612 -3.4844 33 1 1.0585 1.8082 1.4460 34 1 0.5517 3.3978 3.2544 35 1 0.9597 2.7747 5.5985 36 1 1.8775 0.5586 6.1479 37 1 3.0384 -1.8182 3.7587 38 1 3.4189 -3.5179 5.3190 39 1 4.1051 -5.1714 6.9413 40 1 3.8364 -6.0430 9.2508 41 1 2.2946 -4.8584 10.8002 42 1 1.0931 -2.8615 10.0147 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065453240.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:33 Heat of formation + Delta-G solvation = 55.425606 kcal Electronic energy + Delta-G solvation = -26051.671441 eV Core-core repulsion = 22316.770829 eV Total energy + Delta-G solvation = -3734.900612 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 343.110 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.16001 -39.90480 -38.23660 -35.20541 -34.68263 -34.12784 -32.60203 -31.07832 -30.53803 -29.93641 -28.80281 -25.40345 -24.34209 -23.74171 -22.71620 -22.25316 -21.30597 -20.65969 -18.68964 -18.46594 -17.45485 -16.58325 -16.23002 -16.15951 -15.91245 -15.76425 -15.19098 -14.68064 -14.57347 -14.30575 -14.20762 -13.90650 -13.52554 -13.36704 -13.27321 -12.88225 -12.55419 -12.27435 -11.98706 -11.74165 -11.32119 -11.16793 -11.08930 -11.03337 -10.63288 -10.52379 -10.38253 -10.18112 -10.08626 -9.93545 -9.46821 -9.24318 -9.09628 -8.98372 -8.54990 -8.53941 -7.91063 -6.56176 -6.25995 -4.35530 0.87380 1.09326 1.61604 1.76844 2.19511 2.50471 3.05806 3.17772 3.26062 3.30355 3.55287 3.72840 3.82305 4.17746 4.25803 4.34511 4.56407 4.78421 4.84355 4.95173 5.06128 5.30597 5.38056 5.41933 5.58653 5.64760 5.82829 5.84710 5.91431 6.03319 6.24049 6.31701 6.53629 6.56832 6.61897 6.71837 6.75414 6.77663 6.80112 6.93041 7.27611 7.35625 7.56865 7.58176 7.73626 7.97823 7.98857 8.43283 8.63531 9.28935 10.79803 Molecular weight = 343.11amu Principal moments of inertia in cm(-1) A = 0.015989 B = 0.002562 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.834383 B =10925.391970 C =12397.712071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.102 3.898 3 H 0.052 0.948 4 C -0.510 4.510 5 H 0.067 0.933 6 C 0.070 3.930 7 N -0.885 5.885 8 Si 0.906 3.094 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.281 1.281 12 S -0.181 6.181 13 C -0.092 4.092 14 C -0.113 4.113 15 C -0.121 4.121 16 C -0.120 4.120 17 C -0.118 4.118 18 C 0.168 3.832 19 N -0.669 5.669 20 C 0.695 3.305 21 O -0.511 6.511 22 N -0.668 5.668 23 C 0.382 3.618 24 C -0.211 4.211 25 C -0.047 4.047 26 C -0.212 4.212 27 C 0.134 3.866 28 N -0.474 5.474 29 H 0.021 0.979 30 H 0.096 0.904 31 H 0.038 0.962 32 H 0.266 0.734 33 H 0.138 0.862 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.145 0.855 37 H 0.410 0.590 38 H 0.416 0.584 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.674 -7.510 20.018 21.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 H 0.070 0.930 4 C -0.550 4.550 5 H 0.085 0.915 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.733 3.267 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 S 0.066 5.934 13 C -0.208 4.208 14 C -0.138 4.138 15 C -0.142 4.142 16 C -0.142 4.142 17 C -0.140 4.140 18 C 0.067 3.933 19 N -0.317 5.317 20 C 0.395 3.605 21 O -0.381 6.381 22 N -0.316 5.316 23 C 0.150 3.850 24 C -0.235 4.235 25 C -0.073 4.073 26 C -0.234 4.234 27 C -0.024 4.024 28 N -0.188 5.188 29 H 0.040 0.960 30 H 0.115 0.885 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.156 0.844 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.163 0.837 37 H 0.246 0.754 38 H 0.252 0.748 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.040 -7.265 20.194 21.838 hybrid contribution 0.651 -0.458 -1.399 1.609 sum 4.692 -7.723 18.795 20.855 Atomic orbital electron populations 1.22125 0.96220 1.00186 1.01803 1.21090 0.95666 0.97297 0.88440 0.92977 1.20667 1.32482 1.13242 0.88592 0.91474 1.24895 0.94661 0.94967 0.98887 1.69865 1.35782 1.22510 1.24085 0.86296 0.78714 0.79607 0.82044 1.19515 1.20707 1.20700 1.84923 1.76923 1.29367 1.02140 1.21661 1.04516 0.99334 0.95288 1.21281 0.99631 0.92302 1.00579 1.21029 1.01146 0.99353 0.92656 1.20932 1.00899 0.96149 0.96212 1.21239 1.00816 0.92470 0.99493 1.16942 1.00631 0.84074 0.91697 1.42606 1.55520 1.18794 1.14762 1.15914 0.81178 0.80779 0.82633 1.91009 1.36521 1.60660 1.49892 1.42706 1.53390 1.24164 1.11377 1.18171 0.91814 0.89947 0.85066 1.21429 1.04793 0.98565 0.98698 1.21326 0.95478 0.98298 0.92221 1.22050 1.00921 0.98855 1.01563 1.22711 0.95802 0.92747 0.91167 1.67703 1.16647 1.31175 1.03265 0.96049 0.88525 0.94249 0.92418 0.84427 0.86211 0.86206 0.83737 0.75389 0.74782 0.84617 0.84564 0.84842 0.82488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.65 37.16 0.32 -3.04 16 2 C 0.10 2.46 1.97 -27.88 -0.05 2.40 16 3 H 0.05 1.33 6.77 -51.92 -0.35 0.98 16 4 C -0.51 -13.34 8.58 -34.44 -0.30 -13.64 16 5 H 0.07 1.76 7.71 -52.49 -0.40 1.36 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 7 N -0.88 -23.71 11.30 55.43 0.63 -23.09 16 8 Si 0.91 20.29 29.54 -169.99 -5.02 15.27 16 9 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 S -0.18 -3.72 19.92 -107.50 -2.14 -5.87 16 13 C -0.09 -1.77 6.09 -38.91 -0.24 -2.01 16 14 C -0.11 -2.12 8.17 -39.39 -0.32 -2.44 16 15 C -0.12 -1.95 10.04 -39.57 -0.40 -2.34 16 16 C -0.12 -1.85 10.04 -39.55 -0.40 -2.25 16 17 C -0.12 -2.01 8.72 -39.43 -0.34 -2.35 16 18 C 0.17 2.96 6.44 -83.42 -0.54 2.43 16 19 N -0.67 -10.19 5.19 -14.07 -0.07 -10.26 16 20 C 0.69 10.57 8.33 -86.92 -0.72 9.85 16 21 O -0.51 -9.38 11.77 5.29 0.06 -9.32 16 22 N -0.67 -7.68 5.39 -15.81 -0.09 -7.76 16 23 C 0.38 4.53 7.42 -154.73 -1.15 3.38 16 24 C -0.21 -1.76 9.94 -39.24 -0.39 -2.15 16 25 C -0.05 -0.33 10.17 -39.32 -0.40 -0.73 16 26 C -0.21 -1.60 10.10 -39.43 -0.40 -2.00 16 27 C 0.13 1.36 11.17 -17.57 -0.20 1.16 16 28 N -0.47 -6.51 7.89 -12.37 -0.10 -6.61 16 29 H 0.02 0.45 6.18 -51.93 -0.32 0.13 16 30 H 0.10 2.45 5.98 -51.93 -0.31 2.14 16 31 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 33 H 0.14 2.74 4.85 -52.49 -0.25 2.48 16 34 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.15 2.50 5.77 -52.49 -0.30 2.20 16 37 H 0.41 5.52 7.65 -40.82 -0.31 5.21 16 38 H 0.42 3.22 8.72 -40.82 -0.36 2.86 16 39 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 40 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.13 0.64 8.06 -52.48 -0.42 0.21 16 42 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 361.87 15.07 5.45 5.45 Total: -1.00 -31.84 361.87 -11.60 -43.43 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -4.71 Total: 10.74 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -5.61 Total: -12.00 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 0.37 Total: -47.71 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.06 Total: -9.32 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -2.14 Total: -5.87 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.84 -11.60 -43.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065453240.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.860 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds