Wall clock time and date at job start Tue Mar 31 2020 06:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99861 * 2 1 4 4 H 1.48507 * 109.47069 * 270.00089 * 3 2 1 5 5 H 1.48504 * 109.47084 * 30.00034 * 3 2 1 6 6 H 1.48502 * 109.47224 * 150.00170 * 3 2 1 7 7 C 1.37874 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00338 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00005 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.47150 * 179.97438 * 9 7 2 11 11 N 1.40065 * 125.87330 * 270.31295 * 10 9 7 12 12 C 1.30249 * 109.69128 * 180.16223 * 11 10 9 13 13 C 1.41168 * 108.46928 * 359.57642 * 12 11 10 14 14 C 1.36308 * 125.86988 * 90.00495 * 10 9 7 15 15 N 1.33199 * 134.61952 * 359.97438 * 14 10 9 16 16 C 1.31512 * 120.68272 * 180.02562 * 15 14 10 17 17 N 1.32124 * 122.64693 * 359.97438 * 16 15 14 18 18 C 1.32858 * 121.19386 * 0.02562 * 17 16 15 19 19 N 1.38108 * 120.81367 * 179.97438 * 18 17 16 20 20 C 1.46494 * 120.00075 * 0.02562 * 19 18 17 21 21 C 1.53119 * 109.52602 * 274.68545 * 20 19 18 22 22 C 1.53034 * 109.28230 * 182.43737 * 21 20 19 23 23 N 1.46851 * 109.51960 * 59.17791 * 22 21 20 24 24 C 1.46905 * 111.00038 * 174.16250 * 23 22 21 25 25 C 1.53005 * 117.49654 * 12.83283 * 24 23 22 26 26 C 1.53003 * 60.00012 * 252.51170 * 25 24 23 27 27 C 1.46844 * 111.20016 * 298.25775 * 23 22 21 28 28 C 1.53042 * 109.52396 * 61.74277 * 27 23 22 29 29 H 0.97001 * 120.00605 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46776 * 60.00100 * 9 7 2 31 31 H 1.08998 * 109.47449 * 300.00035 * 9 7 2 32 32 H 1.08002 * 125.76682 * 179.84835 * 12 11 10 33 33 H 1.08001 * 118.67412 * 179.97438 * 16 15 14 34 34 H 0.96999 * 119.99740 * 180.02562 * 19 18 17 35 35 H 1.09004 * 109.52390 * 34.87361 * 20 19 18 36 36 H 1.08998 * 109.49921 * 302.38377 * 21 20 19 37 37 H 1.09005 * 109.50314 * 62.49956 * 21 20 19 38 38 H 1.08999 * 109.46442 * 299.16443 * 22 21 20 39 39 H 1.08999 * 109.46677 * 179.19151 * 22 21 20 40 40 H 1.08994 * 115.55044 * 158.53918 * 24 23 22 41 41 H 1.09000 * 117.49515 * 359.97438 * 25 24 23 42 42 H 1.08995 * 117.49694 * 145.02624 * 25 24 23 43 43 H 1.08998 * 117.50077 * 252.51025 * 26 25 24 44 44 H 1.09005 * 117.52307 * 107.47754 * 26 25 24 45 45 H 1.09000 * 109.46196 * 301.72744 * 27 23 22 46 46 H 1.08997 * 109.45518 * 181.75495 * 27 23 22 47 47 H 1.09001 * 109.50379 * 180.87940 * 28 27 23 48 48 H 1.09003 * 109.53447 * 60.78010 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 7 4.2681 -3.3509 1.1340 12 6 4.6900 -4.5285 0.7712 13 6 4.7085 -4.5819 -0.6394 14 6 4.2658 -3.3285 -1.1055 15 7 4.1916 -3.1214 -2.4192 16 6 4.5259 -4.0688 -3.2679 17 7 4.9473 -5.2588 -2.8779 18 6 5.0555 -5.5622 -1.5890 19 7 5.4964 -6.8087 -1.1902 20 6 5.8521 -7.8154 -2.1933 21 6 4.5933 -8.5705 -2.6292 22 6 4.9796 -9.6607 -3.6313 23 7 5.9349 -10.5848 -3.0069 24 6 6.2224 -11.7220 -3.8914 25 6 5.7665 -11.6166 -5.3482 26 6 5.0350 -12.5520 -4.3834 27 6 7.1710 -9.8914 -2.6228 28 6 6.8501 -8.8079 -1.5906 29 1 -0.4851 0.8400 0.0004 30 1 3.8752 -0.6804 0.8889 31 1 3.8746 -0.6800 -0.8911 32 1 4.9733 -5.3304 1.4369 33 1 4.4529 -3.8660 -4.3261 34 1 5.5706 -7.0177 -0.2459 35 1 6.3017 -7.3258 -3.0572 36 1 4.1228 -9.0267 -1.7583 37 1 3.8963 -7.8758 -3.0981 38 1 5.4376 -9.2026 -4.5079 39 1 4.0875 -10.2096 -3.9328 40 1 7.1562 -12.2478 -3.6928 41 1 5.2530 -10.7038 -5.6500 42 1 6.4005 -12.0732 -6.1082 43 1 5.1877 -13.6240 -4.5087 44 1 4.0406 -12.2547 -4.0503 45 1 7.6187 -9.4321 -3.5042 46 1 7.8703 -10.6078 -2.1918 47 1 7.7655 -8.2830 -1.3174 48 1 6.4154 -9.2675 -0.7030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065595175.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:40 Heat of formation + Delta-G solvation = 155.487752 kcal Electronic energy + Delta-G solvation = -29210.920883 eV Core-core repulsion = 25303.450928 eV Total energy + Delta-G solvation = -3907.469955 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.186 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.45457 -40.08196 -38.54710 -37.29200 -35.15268 -33.70033 -32.40883 -31.49357 -31.25368 -30.83481 -28.91033 -27.74652 -24.67974 -24.06599 -23.57817 -22.90325 -22.73272 -22.19608 -21.09966 -20.14374 -19.77238 -17.86860 -17.54839 -17.10496 -16.97797 -16.36128 -15.86800 -15.45979 -15.24978 -14.79699 -14.49275 -14.32431 -14.21525 -14.02686 -13.78795 -13.75669 -13.55033 -12.97120 -12.65507 -12.45575 -12.43019 -12.04812 -12.00824 -11.88363 -11.75026 -11.38242 -11.21740 -11.04467 -11.02208 -10.84003 -10.73454 -10.70293 -10.58473 -10.24892 -10.12812 -9.68685 -9.28260 -8.73333 -8.71101 -8.50888 -8.26161 -7.65995 -6.21512 -4.24008 1.26868 1.89832 2.83473 2.98267 3.06361 3.21650 3.23280 3.27240 3.29121 3.64546 4.26732 4.31433 4.34302 4.44033 4.50459 4.54059 4.60667 4.63661 4.68138 4.80805 4.91696 4.92995 5.02431 5.07465 5.10580 5.18546 5.26600 5.32821 5.35176 5.38629 5.44839 5.52878 5.59780 5.66419 5.68857 5.74362 5.76231 5.90305 6.08167 6.28176 6.50655 6.55714 6.67353 6.72260 6.87271 6.91824 7.22108 7.31608 7.43428 7.82566 8.13017 8.31771 8.75872 8.81074 9.33266 10.91216 Molecular weight = 342.19amu Principal moments of inertia in cm(-1) A = 0.025536 B = 0.002133 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.236044 B =13122.749920 C =13478.480651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.079 3.921 3 Si 0.875 3.125 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.078 0.922 9 C 0.237 3.763 10 N -0.332 5.332 11 N -0.241 5.241 12 C 0.073 3.927 13 C -0.336 4.336 14 C 0.367 3.633 15 N -0.557 5.557 16 C 0.369 3.631 17 N -0.617 5.617 18 C 0.512 3.488 19 N -0.701 5.701 20 C 0.156 3.844 21 C -0.127 4.127 22 C 0.055 3.945 23 N -0.507 5.507 24 C 0.023 3.977 25 C -0.222 4.222 26 C -0.172 4.172 27 C 0.063 3.937 28 C -0.126 4.126 29 H 0.268 0.732 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.184 0.816 33 H 0.195 0.805 34 H 0.409 0.591 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.119 0.881 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.039 0.961 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.137 -23.415 -7.510 29.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.701 3.299 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.575 4.575 8 H 0.096 0.904 9 C 0.118 3.882 10 N -0.118 5.118 11 N -0.057 5.057 12 C -0.122 4.122 13 C -0.354 4.354 14 C 0.119 3.881 15 N -0.282 5.282 16 C 0.075 3.925 17 N -0.347 5.347 18 C 0.260 3.740 19 N -0.333 5.333 20 C 0.051 3.949 21 C -0.166 4.166 22 C -0.073 4.073 23 N -0.230 5.230 24 C -0.087 4.087 25 C -0.261 4.261 26 C -0.210 4.210 27 C -0.065 4.065 28 C -0.165 4.165 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.201 0.799 33 H 0.211 0.789 34 H 0.245 0.755 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.096 0.904 40 H 0.136 0.864 41 H 0.118 0.882 42 H 0.111 0.889 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.057 0.943 46 H 0.098 0.902 47 H 0.094 0.906 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 15.349 -22.273 -7.031 27.948 hybrid contribution 0.676 0.436 -0.227 0.836 sum 16.025 -21.837 -7.258 28.042 Atomic orbital electron populations 1.69870 1.06154 1.27357 1.49093 1.24775 0.94848 0.98838 0.94024 0.86871 0.80334 0.83618 0.79098 1.19504 1.20537 1.18881 1.21104 0.87887 0.95451 1.53105 0.90422 1.20082 0.96674 0.72527 0.98883 1.48945 1.50656 1.13119 0.99128 1.76946 1.16200 1.03632 1.08889 1.23395 1.00209 0.96225 0.92396 1.19591 1.22165 0.98332 0.95332 1.18900 0.92383 0.88360 0.88458 1.67506 1.25019 1.35786 0.99929 1.24409 0.86770 0.82170 0.99144 1.67944 1.28758 1.23509 1.14535 1.17905 0.83999 0.83981 0.88149 1.44409 1.69985 1.09869 1.09053 1.20966 0.94512 0.87602 0.91806 1.22016 0.98281 0.96634 0.99653 1.22177 0.96072 0.93200 0.95832 1.61836 1.12147 1.08840 1.40147 1.22633 0.98726 0.96173 0.91153 1.23577 1.05488 1.02727 0.94326 1.23067 0.97449 0.97463 1.02997 1.21994 0.91145 0.95727 0.97642 1.21900 0.99451 0.95830 0.99295 0.92156 0.93079 0.93094 0.79902 0.78882 0.75495 0.89119 0.91101 0.90369 0.93931 0.90436 0.86358 0.88153 0.88867 0.88513 0.88484 0.94257 0.90229 0.90638 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.11 13.96 55.43 0.77 -26.34 16 2 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 3 Si 0.87 20.95 27.47 -169.99 -4.67 16.28 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 7 C -0.54 -15.67 9.94 -34.44 -0.34 -16.01 16 8 H 0.08 2.55 8.06 -52.48 -0.42 2.13 16 9 C 0.24 5.97 5.26 -5.19 -0.03 5.94 16 10 N -0.33 -7.80 3.63 -61.64 -0.22 -8.02 16 11 N -0.24 -5.08 12.45 30.80 0.38 -4.69 16 12 C 0.07 1.21 11.87 -17.11 -0.20 1.01 16 13 C -0.34 -5.96 6.14 -106.82 -0.66 -6.62 16 14 C 0.37 7.95 8.04 -156.24 -1.26 6.69 16 15 N -0.56 -11.51 10.47 -13.97 -0.15 -11.65 16 16 C 0.37 6.03 12.24 -92.11 -1.13 4.90 16 17 N -0.62 -9.41 9.34 -13.62 -0.13 -9.54 16 18 C 0.51 7.60 7.53 -154.85 -1.17 6.44 16 19 N -0.70 -7.39 5.20 -53.48 -0.28 -7.67 16 20 C 0.16 1.40 2.55 -67.81 -0.17 1.23 16 21 C -0.13 -1.18 5.68 -26.65 -0.15 -1.33 16 22 C 0.06 0.44 4.12 -3.83 -0.02 0.43 16 23 N -0.51 -3.80 4.88 -226.68 -1.11 -4.91 16 24 C 0.02 0.15 6.11 -67.71 -0.41 -0.26 16 25 C -0.22 -1.39 9.58 -26.73 -0.26 -1.65 16 26 C -0.17 -1.08 9.94 -26.73 -0.27 -1.35 16 27 C 0.06 0.41 5.44 -3.83 -0.02 0.39 16 28 C -0.13 -0.85 5.57 -26.65 -0.15 -1.00 16 29 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.05 1.26 7.20 -51.93 -0.37 0.88 16 31 H 0.05 1.26 7.57 -51.93 -0.39 0.87 16 32 H 0.18 2.03 8.06 -52.49 -0.42 1.61 16 33 H 0.19 2.38 8.06 -52.49 -0.42 1.96 16 34 H 0.41 3.46 8.47 -40.82 -0.35 3.11 16 35 H 0.09 0.95 7.57 -51.93 -0.39 0.56 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.04 0.35 7.12 -51.93 -0.37 -0.02 16 39 H 0.08 0.62 6.42 -51.93 -0.33 0.29 16 40 H 0.12 0.65 8.04 -51.93 -0.42 0.24 16 41 H 0.10 0.68 5.97 -51.93 -0.31 0.37 16 42 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.10 0.67 7.23 -51.93 -0.38 0.30 16 45 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 46 H 0.08 0.43 8.07 -51.93 -0.42 0.02 16 47 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 386.78 15.07 5.83 5.83 Total: -1.00 -34.04 386.78 -13.01 -47.05 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.13 Total: 2.67 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -6.32 Total: 1.00 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -0.72 Total: -72.82 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.04 -13.01 -47.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065595175.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.538 kcal (2) G-P(sol) polarization free energy of solvation -34.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds