Wall clock time and date at job start Tue Mar 31 2020 06:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99861 * 2 1 4 4 H 1.48507 * 109.47069 * 270.00089 * 3 2 1 5 5 H 1.48504 * 109.47084 * 30.00034 * 3 2 1 6 6 H 1.48502 * 109.47224 * 150.00170 * 3 2 1 7 7 C 1.37874 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00338 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00005 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.47150 * 179.97438 * 9 7 2 11 11 N 1.40065 * 125.87330 * 270.31295 * 10 9 7 12 12 C 1.30249 * 109.69128 * 180.16223 * 11 10 9 13 13 C 1.41168 * 108.46928 * 359.57642 * 12 11 10 14 14 C 1.36308 * 125.86988 * 90.00495 * 10 9 7 15 15 N 1.33199 * 134.61952 * 359.97438 * 14 10 9 16 16 C 1.31512 * 120.68272 * 180.02562 * 15 14 10 17 17 N 1.32124 * 122.64693 * 359.97438 * 16 15 14 18 18 C 1.32858 * 121.19386 * 0.02562 * 17 16 15 19 19 N 1.38108 * 120.81367 * 179.97438 * 18 17 16 20 20 C 1.46494 * 120.00075 * 0.02562 * 19 18 17 21 21 C 1.53119 * 109.52602 * 274.68545 * 20 19 18 22 22 C 1.53034 * 109.28230 * 182.43737 * 21 20 19 23 23 N 1.46851 * 109.51960 * 59.17791 * 22 21 20 24 24 C 1.46905 * 111.00038 * 174.16250 * 23 22 21 25 25 C 1.53005 * 117.49654 * 12.83283 * 24 23 22 26 26 C 1.53003 * 60.00012 * 252.51170 * 25 24 23 27 27 C 1.46844 * 111.20016 * 298.25775 * 23 22 21 28 28 C 1.53042 * 109.52396 * 61.74277 * 27 23 22 29 29 H 0.97001 * 120.00605 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46776 * 60.00100 * 9 7 2 31 31 H 1.08998 * 109.47449 * 300.00035 * 9 7 2 32 32 H 1.08002 * 125.76682 * 179.84835 * 12 11 10 33 33 H 1.08001 * 118.67412 * 179.97438 * 16 15 14 34 34 H 0.96999 * 119.99740 * 180.02562 * 19 18 17 35 35 H 1.09004 * 109.52390 * 34.87361 * 20 19 18 36 36 H 1.08998 * 109.49921 * 302.38377 * 21 20 19 37 37 H 1.09005 * 109.50314 * 62.49956 * 21 20 19 38 38 H 1.08999 * 109.46442 * 299.16443 * 22 21 20 39 39 H 1.08999 * 109.46677 * 179.19151 * 22 21 20 40 40 H 1.08994 * 115.55044 * 158.53918 * 24 23 22 41 41 H 1.09000 * 117.49515 * 359.97438 * 25 24 23 42 42 H 1.08995 * 117.49694 * 145.02624 * 25 24 23 43 43 H 1.08998 * 117.50077 * 252.51025 * 26 25 24 44 44 H 1.09005 * 117.52307 * 107.47754 * 26 25 24 45 45 H 1.09000 * 109.46196 * 301.72744 * 27 23 22 46 46 H 1.08997 * 109.45518 * 181.75495 * 27 23 22 47 47 H 1.09001 * 109.50379 * 180.87940 * 28 27 23 48 48 H 1.09003 * 109.53447 * 60.78010 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 7 4.2681 -3.3509 1.1340 12 6 4.6900 -4.5285 0.7712 13 6 4.7085 -4.5819 -0.6394 14 6 4.2658 -3.3285 -1.1055 15 7 4.1916 -3.1214 -2.4192 16 6 4.5259 -4.0688 -3.2679 17 7 4.9473 -5.2588 -2.8779 18 6 5.0555 -5.5622 -1.5890 19 7 5.4964 -6.8087 -1.1902 20 6 5.8521 -7.8154 -2.1933 21 6 4.5933 -8.5705 -2.6292 22 6 4.9796 -9.6607 -3.6313 23 7 5.9349 -10.5848 -3.0069 24 6 6.2224 -11.7220 -3.8914 25 6 5.7665 -11.6166 -5.3482 26 6 5.0350 -12.5520 -4.3834 27 6 7.1710 -9.8914 -2.6228 28 6 6.8501 -8.8079 -1.5906 29 1 -0.4851 0.8400 0.0004 30 1 3.8752 -0.6804 0.8889 31 1 3.8746 -0.6800 -0.8911 32 1 4.9733 -5.3304 1.4369 33 1 4.4529 -3.8660 -4.3261 34 1 5.5706 -7.0177 -0.2459 35 1 6.3017 -7.3258 -3.0572 36 1 4.1228 -9.0267 -1.7583 37 1 3.8963 -7.8758 -3.0981 38 1 5.4376 -9.2026 -4.5079 39 1 4.0875 -10.2096 -3.9328 40 1 7.1562 -12.2478 -3.6928 41 1 5.2530 -10.7038 -5.6500 42 1 6.4005 -12.0732 -6.1082 43 1 5.1877 -13.6240 -4.5087 44 1 4.0406 -12.2547 -4.0503 45 1 7.6187 -9.4321 -3.5042 46 1 7.8703 -10.6078 -2.1918 47 1 7.7655 -8.2830 -1.3174 48 1 6.4154 -9.2675 -0.7030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065595175.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:39 Heat of formation + Delta-G solvation = 133.154533 kcal Electronic energy + Delta-G solvation = -29211.889324 eV Core-core repulsion = 25303.450928 eV Total energy + Delta-G solvation = -3908.438396 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.186 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.84747 -40.75521 -39.80280 -38.15511 -36.13621 -35.54311 -33.89522 -33.08050 -32.05566 -31.73367 -30.07429 -29.56999 -25.65328 -25.38031 -24.71797 -24.14456 -23.49867 -23.20986 -21.74906 -21.51621 -20.51665 -19.28698 -19.24075 -18.72244 -17.73501 -17.62512 -16.81051 -16.63452 -16.37666 -16.08861 -15.56458 -15.41905 -15.25438 -15.17002 -14.94005 -14.71795 -14.58601 -14.42743 -14.14182 -13.90429 -13.25349 -13.13712 -13.08383 -12.83256 -12.65315 -12.54670 -12.50638 -12.32355 -12.16197 -11.96458 -11.86704 -11.70199 -11.57610 -11.51177 -11.41927 -11.13447 -10.92483 -10.58019 -10.08263 -9.76521 -9.06951 -8.97517 -8.43849 -6.54105 -0.05519 0.51082 1.26896 1.33307 1.38213 1.45832 1.61657 2.00759 2.24037 2.70522 2.87731 2.99368 3.13472 3.25857 3.36325 3.63662 3.71215 3.76959 3.85745 3.96547 4.05218 4.08317 4.10358 4.23218 4.29462 4.39457 4.41427 4.50093 4.55828 4.66885 4.71025 4.74362 4.80091 4.84291 4.92317 4.98116 5.08080 5.14997 5.16453 5.19369 5.20747 5.26785 5.36906 5.51804 5.68483 5.87505 6.07123 6.10228 6.18762 6.20757 6.44794 6.55747 6.76712 7.08478 7.43856 8.73216 Molecular weight = 342.19amu Principal moments of inertia in cm(-1) A = 0.025536 B = 0.002133 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.236044 B =13122.749920 C =13478.480651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.019 3.981 3 Si 0.954 3.046 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.243 1.243 7 C -0.548 4.548 8 H 0.019 0.981 9 C 0.251 3.749 10 N -0.366 5.366 11 N -0.288 5.288 12 C 0.103 3.897 13 C -0.345 4.345 14 C 0.338 3.662 15 N -0.605 5.605 16 C 0.376 3.624 17 N -0.613 5.613 18 C 0.520 3.480 19 N -0.677 5.677 20 C 0.157 3.843 21 C -0.121 4.121 22 C 0.063 3.937 23 N -0.514 5.514 24 C 0.018 3.982 25 C -0.222 4.222 26 C -0.174 4.174 27 C 0.062 3.938 28 C -0.117 4.117 29 H 0.274 0.726 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.240 0.760 33 H 0.229 0.771 34 H 0.422 0.578 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.039 0.961 39 H 0.074 0.926 40 H 0.133 0.867 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.087 0.913 45 H 0.038 0.962 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.112 -25.154 -7.621 32.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.180 4.180 3 Si 0.775 3.225 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.167 1.167 7 C -0.586 4.586 8 H 0.038 0.962 9 C 0.131 3.869 10 N -0.153 5.153 11 N -0.103 5.103 12 C -0.092 4.092 13 C -0.363 4.363 14 C 0.091 3.909 15 N -0.332 5.332 16 C 0.084 3.916 17 N -0.344 5.344 18 C 0.265 3.735 19 N -0.309 5.309 20 C 0.053 3.947 21 C -0.160 4.160 22 C -0.066 4.066 23 N -0.237 5.237 24 C -0.091 4.091 25 C -0.261 4.261 26 C -0.212 4.212 27 C -0.065 4.065 28 C -0.155 4.155 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.256 0.744 33 H 0.245 0.755 34 H 0.261 0.739 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.093 0.907 40 H 0.151 0.849 41 H 0.110 0.890 42 H 0.121 0.879 43 H 0.127 0.873 44 H 0.105 0.895 45 H 0.056 0.944 46 H 0.115 0.885 47 H 0.107 0.893 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 18.361 -24.108 -7.129 31.131 hybrid contribution -0.255 0.643 -0.302 0.755 sum 18.106 -23.465 -7.432 30.555 Atomic orbital electron populations 1.70027 1.08305 1.28932 1.50277 1.25851 0.95815 1.03394 0.92971 0.85636 0.79503 0.77485 0.79915 1.18329 1.19538 1.16662 1.21202 0.90292 0.93481 1.53601 0.96245 1.19648 0.93647 0.74743 0.98886 1.48728 1.52957 1.13053 1.00545 1.76889 1.19242 1.05376 1.08768 1.24287 0.96481 0.95760 0.92693 1.19750 1.22699 0.97686 0.96189 1.19357 0.92946 0.89747 0.88810 1.67518 1.27693 1.37862 1.00163 1.25159 0.84669 0.81694 1.00121 1.68096 1.28863 1.22872 1.14550 1.18019 0.83075 0.84856 0.87515 1.44529 1.67564 1.08359 1.10405 1.21089 0.94945 0.87425 0.91287 1.21914 0.97867 0.96558 0.99654 1.22042 0.96334 0.92918 0.95273 1.61839 1.12567 1.08921 1.40356 1.22774 0.99347 0.95906 0.91047 1.23576 1.05546 1.02470 0.94533 1.23106 0.96969 0.98172 1.02974 1.22060 0.90947 0.95954 0.97573 1.21853 0.99097 0.95192 0.99383 0.91672 0.92568 0.92925 0.74388 0.75496 0.73855 0.90165 0.91351 0.92633 0.94235 0.90734 0.84898 0.89035 0.87929 0.87328 0.89468 0.94393 0.88495 0.89326 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.53 13.96 21.45 0.30 -59.23 16 2 C 0.02 1.14 5.47 84.65 0.46 1.61 16 3 Si 0.95 43.79 27.47 68.60 1.88 45.68 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.24 -10.28 6.54 99.48 0.65 -9.63 16 7 C -0.55 -33.66 9.94 25.60 0.25 -33.41 16 8 H 0.02 1.37 8.06 -2.91 -0.02 1.34 16 9 C 0.25 13.06 5.26 85.63 0.45 13.51 16 10 N -0.37 -17.77 3.63 -348.92 -1.27 -19.03 16 11 N -0.29 -12.25 12.45 -56.46 -0.70 -12.95 16 12 C 0.10 3.25 11.87 85.65 1.02 4.27 16 13 C -0.35 -11.98 6.14 -21.29 -0.13 -12.11 16 14 C 0.34 14.98 8.04 134.15 1.08 16.06 16 15 N -0.60 -25.52 10.47 -198.10 -2.07 -27.59 16 16 C 0.38 12.13 12.24 180.87 2.21 14.35 16 17 N -0.61 -17.99 9.34 -197.01 -1.84 -19.83 16 18 C 0.52 14.60 7.53 133.64 1.01 15.60 16 19 N -0.68 -12.43 5.20 -323.11 -1.68 -14.11 16 20 C 0.16 2.43 2.55 45.07 0.12 2.55 16 21 C -0.12 -2.07 5.68 30.65 0.17 -1.90 16 22 C 0.06 0.92 4.12 86.32 0.36 1.28 16 23 N -0.51 -6.51 4.88 -871.10 -4.25 -10.76 16 24 C 0.02 0.20 6.11 44.92 0.27 0.47 16 25 C -0.22 -2.42 9.58 30.60 0.29 -2.13 16 26 C -0.17 -1.91 9.94 30.60 0.30 -1.60 16 27 C 0.06 0.62 5.44 86.33 0.47 1.09 16 28 C -0.12 -1.17 5.57 30.65 0.17 -1.00 16 29 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 30 H 0.06 2.80 7.20 -2.38 -0.02 2.79 16 31 H 0.05 2.67 7.57 -2.39 -0.02 2.65 16 32 H 0.24 4.36 8.06 -2.91 -0.02 4.33 16 33 H 0.23 5.33 8.06 -2.91 -0.02 5.31 16 34 H 0.42 5.56 8.47 -92.71 -0.79 4.77 16 35 H 0.08 1.50 7.57 -2.38 -0.02 1.48 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.05 1.21 8.14 -2.38 -0.02 1.20 16 38 H 0.04 0.61 7.12 -2.39 -0.02 0.59 16 39 H 0.07 1.14 6.42 -2.39 -0.02 1.13 16 40 H 0.13 1.06 8.04 -2.39 -0.02 1.04 16 41 H 0.09 1.16 5.97 -2.39 -0.01 1.14 16 42 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.09 1.13 7.23 -2.38 -0.02 1.11 16 45 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.10 0.68 8.07 -2.39 -0.02 0.66 16 47 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -80.12 386.78 -0.97 -81.09 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.15 Total: 18.09 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 8.51 Total: 18.65 kcal Atomic # 7 Polarization: -152.00 SS G_CDS: -11.51 Total: -163.51 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.68 kcal Total: -80.12 -0.97 -81.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065595175.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.246 kcal (2) G-P(sol) polarization free energy of solvation -80.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds