Wall clock time and date at job start Tue Mar 31 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31398 * 1 3 3 Si 1.86791 * 120.00315 * 2 1 4 4 H 1.48500 * 109.47293 * 90.00065 * 3 2 1 5 5 H 1.48502 * 109.47320 * 209.99993 * 3 2 1 6 6 H 1.48501 * 109.47263 * 329.99951 * 3 2 1 7 7 C 1.39014 * 119.99304 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99346 * 167.80806 * 7 2 1 9 9 N 1.36844 * 120.00451 * 347.80967 * 7 2 1 10 10 C 1.34778 * 120.00264 * 148.65051 * 9 7 2 11 11 O 1.21758 * 119.99913 * 5.63936 * 10 9 7 12 12 C 1.46401 * 119.99925 * 185.63408 * 10 9 7 13 13 C 1.35381 * 125.04579 * 187.18138 * 12 10 9 14 14 C 1.40306 * 115.37818 * 179.79195 * 13 12 10 15 15 S 1.76991 * 136.08300 * 180.11720 * 14 13 12 16 16 C 1.75384 * 92.88884 * 180.37423 * 15 14 13 17 17 C 1.40155 * 130.08484 * 179.97438 * 16 15 14 18 18 C 1.37536 * 120.09812 * 180.02562 * 17 16 15 19 19 C 1.38783 * 120.29223 * 359.94589 * 18 17 16 20 20 C 1.36252 * 120.43147 * 0.03320 * 19 18 17 21 21 C 1.38789 * 110.35295 * 359.97438 * 16 15 14 22 22 C 1.36319 * 113.32825 * 0.50026 * 14 13 12 23 23 S 1.75316 * 125.05272 * 7.49375 * 12 10 9 24 24 C 1.46506 * 119.99944 * 328.64957 * 9 7 2 25 25 C 1.53001 * 117.49595 * 315.85760 * 24 9 7 26 26 C 1.52999 * 117.49720 * 247.19628 * 24 9 7 27 27 H 0.97001 * 119.99920 * 355.04444 * 1 2 3 28 28 H 1.07993 * 122.31435 * 0.02562 * 13 12 10 29 29 H 1.07998 * 119.95629 * 0.02674 * 17 16 15 30 30 H 1.07997 * 119.85954 * 179.97438 * 18 17 16 31 31 H 1.07994 * 119.78427 * 180.02562 * 19 18 17 32 32 H 1.08001 * 119.88459 * 179.97438 * 20 19 18 33 33 H 1.08995 * 115.54898 * 101.52293 * 24 9 7 34 34 H 1.08997 * 117.49794 * 359.97438 * 25 24 9 35 35 H 1.08997 * 117.49673 * 145.02601 * 25 24 9 36 36 H 1.09005 * 117.49783 * 214.97793 * 26 24 9 37 37 H 1.09002 * 117.50290 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6176 0.0000 4 1 2.4956 2.0463 1.4001 5 1 3.5456 1.4400 -0.7000 6 1 1.4455 2.6526 -0.7000 7 6 2.0089 -1.2040 -0.0005 8 1 3.0707 -1.2144 -0.1981 9 7 1.3478 -2.3758 0.2492 10 6 1.7646 -3.5208 -0.3269 11 8 2.7880 -3.5330 -0.9864 12 6 0.9869 -4.7498 -0.1596 13 6 1.3768 -5.9788 -0.5723 14 6 0.4734 -7.0181 -0.3035 15 16 0.4199 -8.7650 -0.5828 16 6 -1.1589 -8.9256 0.1640 17 6 -1.9552 -10.0629 0.3554 18 6 -3.1783 -9.9523 0.9746 19 6 -3.6311 -8.7163 1.4143 20 6 -2.8704 -7.5998 1.2373 21 6 -1.6129 -7.6899 0.6036 22 6 -0.6604 -6.5984 0.3264 23 16 -0.5911 -4.8475 0.5981 24 6 0.1868 -2.3858 1.1428 25 6 0.2935 -1.5953 2.4484 26 6 0.3270 -3.1255 2.4747 27 1 -0.4850 0.8369 0.0726 28 1 2.3199 -6.1482 -1.0704 29 1 -1.6080 -11.0277 0.0162 30 1 -3.7890 -10.8311 1.1197 31 1 -4.5926 -8.6389 1.8998 32 1 -3.2316 -6.6423 1.5826 33 1 -0.7851 -2.4155 0.6504 34 1 1.2276 -1.0681 2.6426 35 1 -0.6084 -1.1054 2.8152 36 1 -0.5530 -3.6415 2.8589 37 1 1.2828 -3.6050 2.6861 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065895171.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:35 Heat of formation + Delta-G solvation = 71.181043 kcal Electronic energy + Delta-G solvation = -24146.542430 eV Core-core repulsion = 20686.952050 eV Total energy + Delta-G solvation = -3459.590379 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 343.044 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.54644 -39.03200 -37.18899 -36.02266 -33.32331 -32.51082 -31.35708 -31.08106 -28.40270 -25.70474 -24.14004 -23.30061 -22.05691 -21.91507 -21.70111 -20.56031 -18.45257 -18.09948 -17.14923 -16.89374 -15.87012 -15.53651 -15.37604 -15.08879 -14.66736 -14.49117 -14.21721 -14.09666 -13.77094 -13.42156 -13.25269 -12.89012 -12.62910 -12.25189 -12.07376 -11.63413 -11.56808 -11.38643 -11.23029 -11.04013 -10.78511 -10.69479 -10.46292 -10.37890 -10.36575 -10.02785 -9.54822 -9.49975 -9.08388 -8.70182 -8.56478 -7.98278 -7.78764 -7.23380 -6.50724 -4.09894 0.38768 1.12857 1.30987 1.61644 1.82320 2.02628 2.54893 2.56997 3.09800 3.17213 3.21795 3.61170 3.94965 4.08862 4.41492 4.49493 4.57802 4.75930 4.79947 4.96262 5.19252 5.19871 5.36619 5.49664 5.51727 5.56315 5.73183 5.79163 5.89199 5.96071 6.11757 6.13429 6.18881 6.33709 6.36758 6.50157 6.52407 6.70585 6.72766 6.88366 7.38238 7.95850 8.26767 8.95599 9.13721 9.72633 10.53500 Molecular weight = 343.04amu Principal moments of inertia in cm(-1) A = 0.022667 B = 0.003328 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.982691 B = 8411.829378 C = 9307.711075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.044 3.956 3 Si 0.923 3.077 4 H -0.275 1.275 5 H -0.267 1.267 6 H -0.282 1.282 7 C -0.307 4.307 8 H 0.101 0.899 9 N -0.400 5.400 10 C 0.513 3.487 11 O -0.569 6.569 12 C -0.178 4.178 13 C -0.071 4.071 14 C -0.140 4.140 15 S 0.108 5.892 16 C -0.132 4.132 17 C -0.083 4.083 18 C -0.110 4.110 19 C -0.118 4.118 20 C -0.085 4.085 21 C -0.018 4.018 22 C -0.210 4.210 23 S 0.235 5.765 24 C 0.093 3.907 25 C -0.128 4.128 26 C -0.212 4.212 27 H 0.271 0.729 28 H 0.148 0.852 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.416 -14.062 5.463 17.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.163 4.163 3 Si 0.749 3.251 4 H -0.201 1.201 5 H -0.191 1.191 6 H -0.207 1.207 7 C -0.435 4.435 8 H 0.119 0.881 9 N -0.117 5.117 10 C 0.302 3.698 11 O -0.455 6.455 12 C -0.301 4.301 13 C -0.106 4.106 14 C -0.266 4.266 15 S 0.369 5.631 16 C -0.248 4.248 17 C -0.106 4.106 18 C -0.131 4.131 19 C -0.139 4.139 20 C -0.105 4.105 21 C -0.028 4.028 22 C -0.335 4.335 23 S 0.506 5.494 24 C -0.016 4.016 25 C -0.166 4.166 26 C -0.252 4.252 27 H 0.082 0.918 28 H 0.166 0.834 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.133 0.867 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.006 -13.777 5.023 16.707 hybrid contribution 0.213 0.816 -0.051 0.845 sum -7.793 -12.961 4.972 15.920 Atomic orbital electron populations 1.69909 1.06063 1.28403 1.44785 1.25392 0.95392 0.99799 0.95692 0.85962 0.79754 0.80797 0.78586 1.20082 1.19100 1.20711 1.19614 0.93881 0.82341 1.47698 0.88107 1.42927 1.25539 1.06622 1.36569 1.16714 0.87211 0.82174 0.83698 1.90689 1.25613 1.84734 1.44418 1.24519 0.99775 0.98535 1.07241 1.19727 1.00102 0.88460 1.02334 1.22130 0.98630 0.97861 1.08013 1.83794 1.14194 1.00139 1.64923 1.22392 0.99874 0.96803 1.05778 1.20521 0.93996 0.96090 0.99987 1.20992 0.95591 0.97859 0.98664 1.20691 1.00020 0.92416 1.00769 1.20816 0.92380 0.99310 0.98009 1.18374 0.94440 0.89688 1.00276 1.24809 0.97970 1.01603 1.09081 1.84850 1.14724 0.94499 1.55357 1.21246 0.91305 1.04005 0.85004 1.22754 1.03084 0.91806 0.98982 1.23608 1.03072 0.96307 1.02223 0.91827 0.83419 0.85492 0.85379 0.85480 0.85592 0.86692 0.88363 0.89105 0.88337 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.26 11.23 55.50 0.62 -20.63 16 2 C 0.04 1.10 4.65 -17.45 -0.08 1.02 16 3 Si 0.92 19.57 29.57 -169.99 -5.03 14.54 16 4 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 5 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.31 -8.14 8.61 -15.03 -0.13 -8.27 16 8 H 0.10 2.81 7.53 -52.48 -0.40 2.41 16 9 N -0.40 -9.92 2.89 -109.30 -0.32 -10.24 16 10 C 0.51 12.87 7.51 -12.97 -0.10 12.77 16 11 O -0.57 -16.02 16.56 5.14 0.09 -15.94 16 12 C -0.18 -3.72 6.03 -37.32 -0.23 -3.94 16 13 C -0.07 -1.38 9.91 -39.82 -0.39 -1.77 16 14 C -0.14 -2.44 6.80 -39.50 -0.27 -2.71 16 15 S 0.11 1.54 23.23 -107.50 -2.50 -0.95 16 16 C -0.13 -1.82 6.41 -38.66 -0.25 -2.07 16 17 C -0.08 -0.90 10.09 -39.12 -0.39 -1.30 16 18 C -0.11 -1.03 10.02 -39.64 -0.40 -1.43 16 19 C -0.12 -1.17 9.96 -40.09 -0.40 -1.57 16 20 C -0.08 -1.04 10.04 -39.21 -0.39 -1.43 16 21 C -0.02 -0.27 6.02 -104.83 -0.63 -0.90 16 22 C -0.21 -3.54 7.11 -36.50 -0.26 -3.80 16 23 S 0.24 4.07 16.52 -107.50 -1.78 2.30 16 24 C 0.09 1.94 2.20 -67.93 -0.15 1.79 16 25 C -0.13 -2.42 8.77 -26.69 -0.23 -2.65 16 26 C -0.21 -3.66 7.79 -26.69 -0.21 -3.86 16 27 H 0.27 6.36 8.32 -40.82 -0.34 6.02 16 28 H 0.15 2.80 8.01 -52.49 -0.42 2.38 16 29 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 31 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.12 2.47 7.09 -51.93 -0.37 2.10 16 34 H 0.10 1.99 7.82 -51.93 -0.41 1.58 16 35 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.10 1.43 7.46 -51.93 -0.39 1.05 16 37 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 337.99 15.07 5.09 5.09 Total: -1.00 -29.76 337.99 -11.98 -41.74 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -3.65 Total: 4.21 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -4.51 Total: -20.12 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 0.31 Total: -30.87 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.09 Total: -15.94 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Atomic # 16 Polarization: 5.61 SS G_CDS: -4.27 Total: 1.34 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.76 -11.98 -41.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065895171.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.919 kcal (2) G-P(sol) polarization free energy of solvation -29.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds