Wall clock time and date at job start Tue Mar 31 2020 06:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35895 * 116.99982 * 2 1 4 4 C 1.38801 * 120.02580 * 0.02562 * 3 2 1 5 5 C 1.38162 * 120.07765 * 179.97438 * 4 3 2 6 6 C 1.38173 * 120.12152 * 359.76748 * 5 4 3 7 7 C 1.38845 * 120.04259 * 0.50950 * 6 5 4 8 8 N 1.40195 * 120.03770 * 179.74573 * 7 6 5 9 9 C 1.37861 * 126.53810 * 129.86852 * 8 7 6 10 10 C 1.34396 * 106.94597 * 180.29293 * 9 8 7 11 11 N 1.34378 * 108.40947 * 359.73439 * 10 9 8 12 12 C 1.31275 * 109.35565 * 0.02562 * 11 10 9 13 13 S 1.76197 * 125.81971 * 179.97438 * 12 11 10 14 14 C 1.81002 * 100.00219 * 0.02562 * 13 12 11 15 15 C 1.52994 * 109.47514 * 180.02562 * 14 13 12 16 16 H 1.09008 * 109.46970 * 304.99831 * 15 14 13 17 17 C 1.47205 * 109.47251 * 64.99464 * 15 14 13 18 18 N 9.61254 * 116.06581 * 339.41338 * 2 1 3 19 19 C 1.52997 * 109.47404 * 184.99880 * 15 14 13 20 20 C 1.50701 * 109.47212 * 174.99684 * 19 15 14 21 21 H 1.07998 * 120.00129 * 0.02562 * 20 19 15 22 22 C 1.37880 * 119.99861 * 179.97438 * 20 19 15 23 23 N 1.31510 * 119.99913 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99734 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47294 * 60.00559 * 24 22 20 26 26 H 1.48503 * 109.46954 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47431 * 300.00157 * 24 22 20 28 28 C 1.38598 * 120.02303 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47057 * 300.00275 * 1 2 3 30 30 H 1.09000 * 109.47312 * 60.00404 * 1 2 3 31 31 H 1.09000 * 109.47304 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.95690 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.94053 * 180.02562 * 5 4 3 34 34 H 1.08003 * 119.97955 * 180.25202 * 6 5 4 35 35 H 1.07997 * 126.52463 * 0.05243 * 9 8 7 36 36 H 1.07997 * 125.79182 * 179.70839 * 10 9 8 37 37 H 1.09001 * 109.46827 * 59.99361 * 14 13 12 38 38 H 1.09009 * 109.46789 * 300.00025 * 14 13 12 39 39 H 1.09002 * 109.47153 * 54.99686 * 19 15 14 40 40 H 1.09001 * 109.46832 * 294.99876 * 19 15 14 41 41 H 0.97002 * 119.99768 * 179.97438 * 23 22 20 42 42 H 1.07998 * 120.06105 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2905 2.3753 0.0005 5 6 1.9166 3.6069 0.0011 6 6 3.2962 3.6833 0.0059 7 6 4.0568 2.5218 -0.0004 8 7 5.4566 2.5996 -0.0009 9 6 6.3160 1.9319 0.8454 10 6 7.5637 2.2973 0.5048 11 7 7.4877 3.1594 -0.5232 12 6 6.2279 3.3484 -0.8403 13 16 5.6343 4.3966 -2.1261 14 6 7.2046 5.0318 -2.7640 15 6 6.9330 5.9933 -3.9226 16 1 6.3285 5.4907 -4.6778 17 6 6.2102 7.1737 -3.4215 18 7 5.6528 8.0834 -3.0362 19 6 8.2609 6.4334 -4.5423 20 6 7.9911 7.2817 -5.7583 21 1 6.9743 7.4867 -6.0589 22 6 9.0425 7.7968 -6.4865 23 7 10.2807 7.5475 -6.1202 24 14 8.7081 8.8488 -7.9934 25 1 7.9253 10.0469 -7.5970 26 1 9.9969 9.2759 -8.5949 27 1 7.9362 8.0596 -8.9868 28 6 3.4300 1.2839 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.2120 2.3184 0.0005 33 1 1.3266 4.5115 0.0019 34 1 3.7832 4.6473 0.0104 35 1 6.0391 1.2486 1.6345 36 1 8.4729 1.9563 0.9774 37 1 7.8162 4.2011 -3.1164 38 1 7.7323 5.5602 -1.9699 39 1 8.8354 5.5539 -4.8329 40 1 8.8275 7.0129 -3.8134 41 1 11.0203 7.9096 -6.6327 42 1 4.0195 0.3790 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066398959.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:57 Heat of formation + Delta-G solvation = 75.003896 kcal Electronic energy + Delta-G solvation = -25516.719385 eV Core-core repulsion = 21782.667752 eV Total energy + Delta-G solvation = -3734.051633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 343.110 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.21877 -40.44959 -37.97438 -36.78558 -34.12400 -33.93605 -32.23960 -31.23166 -30.01932 -29.21340 -27.80338 -27.69630 -24.19918 -23.57797 -23.19215 -21.94877 -21.34394 -21.08851 -19.37580 -17.32406 -16.84171 -16.80383 -16.58457 -16.49095 -16.22160 -15.80458 -15.32611 -14.82194 -14.43671 -14.36676 -14.05447 -14.02433 -13.72670 -13.67393 -13.18462 -12.90884 -12.73787 -12.70722 -12.27323 -12.16129 -11.92373 -11.69978 -11.48659 -11.45075 -11.14590 -10.94209 -10.67879 -10.48498 -10.47960 -10.27977 -10.17022 -9.57272 -9.48452 -9.28741 -9.12823 -8.67612 -8.46100 -7.40563 -6.10069 -4.14215 0.54146 0.92442 1.23853 1.81444 2.22631 2.45907 2.93716 2.95040 3.22285 3.31388 3.35849 3.39104 3.52187 3.60610 4.29135 4.40104 4.47113 4.56475 4.62764 4.67043 4.67620 4.74904 4.86077 4.96745 5.01607 5.15170 5.26742 5.28072 5.34261 5.41223 5.51340 5.70036 5.74671 5.92125 5.95763 6.05160 6.09544 6.27367 6.37341 6.53459 6.82133 6.92349 7.41023 7.48504 7.74406 7.83582 8.18856 8.34615 8.89404 9.51193 11.00543 Molecular weight = 343.11amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.002370 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.070906 B =11813.058563 C =12762.877901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.142 3.858 4 C -0.203 4.203 5 C -0.059 4.059 6 C -0.144 4.144 7 C 0.161 3.839 8 N -0.407 5.407 9 C -0.049 4.049 10 C -0.009 4.009 11 N -0.478 5.478 12 C 0.210 3.790 13 S -0.027 6.027 14 C -0.086 4.086 15 C 0.021 3.979 16 H 0.112 0.888 17 C 0.237 3.763 18 N -0.459 5.459 19 C 0.038 3.962 20 C -0.530 4.530 21 H 0.057 0.943 22 C 0.064 3.936 23 N -0.889 5.889 24 Si 0.893 3.107 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.275 1.275 28 C -0.147 4.147 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.179 0.821 36 H 0.177 0.823 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.044 0.956 40 H 0.030 0.970 41 H 0.264 0.736 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.405 -17.344 15.621 29.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.096 3.904 4 C -0.222 4.222 5 C -0.077 4.077 6 C -0.164 4.164 7 C 0.069 3.931 8 N -0.090 5.090 9 C -0.181 4.181 10 C -0.158 4.158 11 N -0.200 5.200 12 C -0.159 4.159 13 S 0.206 5.794 14 C -0.235 4.235 15 C -0.003 4.003 16 H 0.129 0.871 17 C -0.081 4.081 18 N -0.135 5.135 19 C -0.001 4.001 20 C -0.568 4.568 21 H 0.076 0.924 22 C -0.139 4.139 23 N -0.527 5.527 24 Si 0.720 3.280 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.200 1.200 28 C -0.167 4.167 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.196 0.804 36 H 0.194 0.806 37 H 0.133 0.867 38 H 0.119 0.881 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.074 0.926 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.499 -15.551 15.430 28.673 hybrid contribution 0.579 -0.379 -0.074 0.696 sum -17.920 -15.931 15.356 28.473 Atomic orbital electron populations 1.23119 0.77835 1.04290 1.01622 1.86078 1.21775 1.26407 1.88513 1.18625 0.91386 0.84562 0.95832 1.21379 1.00528 0.92138 1.08121 1.20852 0.93489 0.97606 0.95785 1.21125 0.94121 0.97809 1.03340 1.17301 0.80411 0.93720 1.01658 1.42979 1.03945 1.35548 1.26578 1.22877 0.89933 1.04702 1.00554 1.22368 0.96812 0.99328 0.97261 1.70887 1.15143 1.18367 1.15567 1.25466 0.88604 1.01802 1.00046 1.85731 1.13408 1.48761 1.31511 1.23803 0.95625 1.02746 1.01363 1.19065 1.00411 0.86275 0.94507 0.87074 1.28927 0.92391 0.94431 0.92337 1.80940 1.11325 1.11093 1.10171 1.19213 0.87408 0.97880 0.95648 1.21061 0.92941 1.32056 1.10730 0.92443 1.24945 0.95027 0.96164 0.97734 1.69929 0.98203 1.44818 1.39760 0.86633 0.77531 0.80873 0.82917 1.20224 1.21163 1.20002 1.20130 0.92088 0.97096 1.07422 0.92434 0.92280 0.87956 0.84715 0.84394 0.84385 0.80417 0.80563 0.86687 0.88062 0.93810 0.95149 0.92641 0.84379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.66 10.49 -19.41 -0.20 -2.86 16 3 C 0.14 1.31 6.68 -39.24 -0.26 1.05 16 4 C -0.20 -1.58 9.04 -39.40 -0.36 -1.94 16 5 C -0.06 -0.50 10.03 -39.63 -0.40 -0.90 16 6 C -0.14 -1.56 8.87 -39.38 -0.35 -1.91 16 7 C 0.16 1.86 5.86 -83.62 -0.49 1.37 16 8 N -0.41 -5.27 2.91 -60.75 -0.18 -5.45 16 9 C -0.05 -0.54 11.31 -16.20 -0.18 -0.72 16 10 C -0.01 -0.12 11.84 -17.79 -0.21 -0.33 16 11 N -0.48 -7.48 10.60 -13.38 -0.14 -7.62 16 12 C 0.21 3.15 7.81 -88.48 -0.69 2.46 16 13 S -0.03 -0.40 20.04 -107.50 -2.15 -2.55 16 14 C -0.09 -1.38 4.61 37.15 0.17 -1.21 16 15 C 0.02 0.39 2.21 -93.41 -0.21 0.18 16 16 H 0.11 1.90 8.14 -51.92 -0.42 1.47 16 17 C 0.24 4.84 13.30 -20.81 -0.28 4.56 16 18 N -0.46 -10.06 18.53 42.09 0.78 -9.28 16 19 C 0.04 0.89 4.42 -27.88 -0.12 0.76 16 20 C -0.53 -13.96 8.60 -34.44 -0.30 -14.26 16 21 H 0.06 1.49 7.59 -52.49 -0.40 1.10 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -25.37 13.29 55.43 0.74 -24.64 16 24 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 28 C -0.15 -1.52 9.64 -39.26 -0.38 -1.90 16 29 H 0.06 0.19 7.66 -51.93 -0.40 -0.21 16 30 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 31 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.14 0.70 6.29 -52.49 -0.33 0.37 16 33 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.14 1.60 7.57 -52.48 -0.40 1.21 16 35 H 0.18 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.18 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.11 1.78 8.14 -51.92 -0.42 1.36 16 38 H 0.10 1.69 8.14 -51.91 -0.42 1.27 16 39 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 382.38 15.07 5.76 5.76 Total: -1.00 -32.60 382.38 -8.86 -41.46 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -5.28 Total: -0.99 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -3.16 Total: -10.01 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 1.20 Total: -46.99 kcal Atomic # 8 Polarization: -2.66 SS G_CDS: -0.20 Total: -2.86 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -0.40 SS G_CDS: -2.15 Total: -2.55 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.60 -8.86 -41.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066398959.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.461 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds