Wall clock time and date at job start Tue Mar 31 2020 05:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13589 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47056 * 110.88536 * 3 2 1 5 5 C 1.37102 * 119.99932 * 264.20145 * 4 3 2 6 6 H 1.07996 * 119.99991 * 198.11140 * 5 4 3 7 7 C 1.38949 * 120.00027 * 18.11913 * 5 4 3 8 8 N 1.31411 * 119.99967 * 18.72704 * 7 5 4 9 9 Si 1.86794 * 120.00116 * 198.72712 * 7 5 4 10 10 H 1.48502 * 109.47266 * 85.58640 * 9 7 5 11 11 H 1.48508 * 109.47135 * 205.58774 * 9 7 5 12 12 H 1.48497 * 109.47228 * 325.58701 * 9 7 5 13 13 C 1.34778 * 120.00177 * 84.20406 * 4 3 2 14 14 O 1.21293 * 120.00023 * 179.97438 * 13 4 3 15 15 C 1.50695 * 119.99884 * 0.02562 * 13 4 3 16 16 C 1.52999 * 109.47141 * 179.97438 * 15 13 4 17 17 C 1.50705 * 109.47243 * 179.97438 * 16 15 13 18 18 C 1.38265 * 119.94153 * 269.72903 * 17 16 15 19 19 C 1.38148 * 120.05733 * 180.27950 * 18 17 16 20 20 C 1.38740 * 119.93933 * 0.02562 * 19 18 17 21 21 O 1.35904 * 120.05176 * 179.97438 * 20 19 18 22 22 C 1.42899 * 117.00163 * 0.02562 * 21 20 19 23 23 F 1.39903 * 109.46562 * 60.00481 * 22 21 20 24 24 F 1.39895 * 109.46797 * 180.02562 * 22 21 20 25 25 F 1.39890 * 109.47324 * 300.00885 * 22 21 20 26 26 C 1.38732 * 119.88734 * 359.97438 * 20 19 18 27 27 C 1.38141 * 119.94744 * 0.02562 * 26 20 19 28 28 H 1.09005 * 109.47196 * 350.88333 * 3 2 1 29 29 H 1.09005 * 109.46978 * 230.88533 * 3 2 1 30 30 H 0.96995 * 120.00338 * 180.02562 * 8 7 5 31 31 H 1.09008 * 109.47226 * 60.00135 * 15 13 4 32 32 H 1.08996 * 109.47320 * 300.00093 * 15 13 4 33 33 H 1.09007 * 109.47013 * 60.00546 * 16 15 13 34 34 H 1.08994 * 109.47739 * 300.00024 * 16 15 13 35 35 H 1.08005 * 119.97540 * 0.25460 * 18 17 16 36 36 H 1.07997 * 120.03240 * 179.97438 * 19 18 17 37 37 H 1.08000 * 120.02492 * 179.97438 * 26 20 19 38 38 H 1.07999 * 119.97394 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0960 0.4933 -1.2905 5 6 3.4380 -0.3941 -2.2780 6 1 4.0594 -0.0731 -3.1009 7 6 2.9850 -1.7064 -2.2203 8 7 1.9591 -2.0144 -1.4590 9 14 3.8342 -3.0327 -3.2247 10 1 4.9943 -3.5630 -2.4642 11 1 2.8772 -4.1345 -3.4997 12 1 4.3064 -2.4552 -4.5087 13 6 3.2089 1.8188 -1.5068 14 8 3.6135 2.2266 -2.5751 15 6 2.8336 2.7941 -0.4211 16 6 3.0542 4.2232 -0.9208 17 6 2.6782 5.1987 0.1648 18 6 1.3838 5.6780 0.2438 19 6 1.0380 6.5767 1.2344 20 6 1.9912 6.9985 2.1501 21 8 1.6536 7.8829 3.1253 22 6 0.2989 8.3368 3.1489 23 9 -0.5564 7.2431 3.3209 24 9 0.1265 9.2352 4.2073 25 9 0.0003 8.9767 1.9412 26 6 3.2893 6.5159 2.0686 27 6 3.6299 5.6175 1.0761 28 1 2.9717 -1.0139 0.1628 29 1 2.9709 0.6492 0.7974 30 1 1.6430 -2.9306 -1.4184 31 1 3.4545 2.6168 0.4571 32 1 1.7847 2.6587 -0.1577 33 1 2.4335 4.4009 -1.7991 34 1 4.1032 4.3585 -1.1839 35 1 0.6423 5.3500 -0.4698 36 1 0.0269 6.9512 1.2956 37 1 4.0331 6.8431 2.7799 38 1 4.6405 5.2419 1.0119 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066645093.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:23 Heat of formation + Delta-G solvation = -171.112391 kcal Electronic energy + Delta-G solvation = -28752.336895 eV Core-core repulsion = 23952.596064 eV Total energy + Delta-G solvation = -4799.740831 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.098 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.73362 -48.46617 -48.31852 -40.49441 -39.02722 -38.06970 -35.85934 -34.43718 -33.35506 -31.85549 -31.30533 -29.36240 -27.46846 -26.45553 -25.23475 -23.62284 -23.18244 -21.48130 -19.90436 -19.44034 -19.29000 -19.03340 -17.92872 -17.00925 -16.63727 -16.38652 -15.71227 -15.51291 -15.50421 -15.09337 -14.81227 -14.76589 -14.71115 -14.43932 -14.42354 -14.36275 -14.25525 -14.09161 -13.50462 -13.44418 -13.14793 -12.98835 -12.62309 -12.38160 -11.94072 -11.70323 -11.49090 -11.41086 -11.33368 -11.16939 -11.13769 -10.71610 -10.53233 -10.42801 -10.30721 -9.29425 -9.25835 -8.74849 -8.45338 -8.07611 -6.52168 -4.03960 1.01092 1.10286 1.21035 2.55966 3.08546 3.20235 3.23727 3.39306 3.48510 3.53886 3.72384 3.77703 3.96881 4.09647 4.44631 4.54140 4.62290 4.86349 4.89444 4.99784 5.16233 5.20842 5.23144 5.45937 5.46961 5.64296 5.74277 5.87763 5.91196 6.08885 6.10810 6.18353 6.20728 6.43831 6.51967 6.58780 6.76011 7.44170 7.87273 8.25144 8.72307 8.97471 9.16935 9.70536 10.53604 Molecular weight = 342.10amu Principal moments of inertia in cm(-1) A = 0.023796 B = 0.002254 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.362323 B =12420.206583 C =13057.596055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.247 3.753 3 C 0.221 3.779 4 N -0.445 5.445 5 C -0.312 4.312 6 H 0.108 0.892 7 C 0.030 3.970 8 N -0.881 5.881 9 Si 0.930 3.070 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.455 3.545 14 O -0.575 6.575 15 C -0.131 4.131 16 C -0.062 4.062 17 C -0.086 4.086 18 C -0.075 4.075 19 C -0.186 4.186 20 C 0.089 3.911 21 O -0.312 6.312 22 C 0.603 3.397 23 F -0.164 7.164 24 F -0.135 7.135 25 F -0.166 7.166 26 C -0.120 4.120 27 C -0.081 4.081 28 H 0.129 0.871 29 H 0.083 0.917 30 H 0.273 0.727 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.581 16.755 11.506 20.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.155 5.155 2 C -0.071 4.071 3 C 0.094 3.906 4 N -0.165 5.165 5 C -0.439 4.439 6 H 0.126 0.874 7 C -0.173 4.173 8 N -0.520 5.520 9 Si 0.756 3.244 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.244 3.756 14 O -0.457 6.457 15 C -0.171 4.171 16 C -0.100 4.100 17 C -0.086 4.086 18 C -0.094 4.094 19 C -0.205 4.205 20 C 0.047 3.953 21 O -0.232 6.232 22 C 0.513 3.487 23 F -0.146 7.146 24 F -0.116 7.116 25 F -0.148 7.148 26 C -0.139 4.139 27 C -0.099 4.099 28 H 0.147 0.853 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.084 16.854 11.137 20.202 hybrid contribution 0.101 -0.806 -0.346 0.883 sum 0.185 16.048 10.791 19.340 Atomic orbital electron populations 1.80896 1.13641 1.11493 1.09455 1.29316 0.95378 0.90678 0.91732 1.18761 0.81585 1.03514 0.86783 1.43655 1.56605 1.04452 1.11776 1.19733 1.29622 0.89541 1.05019 0.87409 1.25292 0.95029 0.98964 0.97998 1.69818 1.21285 1.20558 1.40379 0.85874 0.78804 0.79703 0.79981 1.20094 1.21120 1.19421 1.20140 0.83748 0.82774 0.88923 1.90546 1.50346 1.77624 1.27233 1.21609 1.02708 0.93978 0.98802 1.20324 1.03468 0.91008 0.95159 1.20189 0.93300 0.97846 0.97291 1.20961 0.96343 0.94984 0.97063 1.21491 0.99071 1.02347 0.97580 1.18688 0.95304 0.92366 0.88926 1.86391 1.24557 1.59959 1.52333 1.19355 0.78932 0.75764 0.74697 1.93316 1.71509 1.54715 1.95110 1.93297 1.94468 1.67144 1.56681 1.93300 1.93138 1.82446 1.45913 1.20392 0.92941 0.99633 1.00929 1.20992 1.00057 0.95668 0.93157 0.85310 0.89947 0.91595 0.89834 0.90245 0.90130 0.89867 0.84835 0.85148 0.84546 0.84247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.08 18.54 42.15 0.78 -10.30 16 2 C 0.25 5.32 12.95 -20.76 -0.27 5.05 16 3 C 0.22 4.22 4.91 -6.83 -0.03 4.18 16 4 N -0.44 -9.96 2.60 -117.93 -0.31 -10.26 16 5 C -0.31 -7.81 9.33 -14.93 -0.14 -7.95 16 6 H 0.11 2.85 7.37 -52.49 -0.39 2.47 16 7 C 0.03 0.73 4.94 -17.47 -0.09 0.65 16 8 N -0.88 -21.79 9.33 55.50 0.52 -21.27 16 9 Si 0.93 19.33 29.59 -169.99 -5.03 14.30 16 10 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 11 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 13 C 0.46 9.68 7.56 -10.99 -0.08 9.59 16 14 O -0.57 -14.19 15.64 5.55 0.09 -14.10 16 15 C -0.13 -2.04 4.29 -27.89 -0.12 -2.16 16 16 C -0.06 -0.86 4.63 -27.88 -0.13 -0.99 16 17 C -0.09 -1.02 5.14 -104.60 -0.54 -1.56 16 18 C -0.08 -0.89 9.69 -39.60 -0.38 -1.27 16 19 C -0.19 -2.11 8.26 -39.43 -0.33 -2.43 16 20 C 0.09 0.99 6.48 -39.21 -0.25 0.73 16 21 O -0.31 -3.32 10.37 -19.44 -0.20 -3.52 16 22 C 0.60 5.81 3.42 101.05 0.35 6.15 16 23 F -0.16 -1.66 15.56 2.25 0.04 -1.62 16 24 F -0.13 -1.21 17.53 2.25 0.04 -1.17 16 25 F -0.17 -1.60 15.56 2.25 0.04 -1.57 16 26 C -0.12 -1.20 9.99 -39.43 -0.39 -1.59 16 27 C -0.08 -0.82 9.69 -39.61 -0.38 -1.20 16 28 H 0.13 2.54 6.40 -51.93 -0.33 2.21 16 29 H 0.08 1.18 6.68 -51.93 -0.35 0.83 16 30 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 31 H 0.08 1.08 7.42 -51.92 -0.39 0.69 16 32 H 0.08 1.26 7.51 -51.93 -0.39 0.87 16 33 H 0.08 1.21 8.04 -51.93 -0.42 0.80 16 34 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 35 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 36 H 0.13 1.36 5.10 -52.49 -0.27 1.09 16 37 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 346.38 15.07 5.22 5.22 Total: -1.00 -29.84 346.38 -4.96 -34.80 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -3.35 Total: 2.29 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: -2.79 Total: 7.21 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.99 Total: -41.83 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.11 Total: -17.62 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.11 Total: -4.36 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.84 -4.96 -34.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066645093.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.314 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds