Wall clock time and date at job start Tue Mar 31 2020 05:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47148 * 153.65356 * 3 2 1 5 5 C 1.37089 * 120.00413 * 263.87194 * 4 3 2 6 6 H 1.08004 * 120.00444 * 199.45469 * 5 4 3 7 7 C 1.38947 * 120.00011 * 19.44589 * 5 4 3 8 8 N 1.31416 * 119.99806 * 19.67250 * 7 5 4 9 9 Si 1.86806 * 120.00402 * 199.66789 * 7 5 4 10 10 H 1.48501 * 109.46830 * 60.00132 * 9 7 5 11 11 H 1.48497 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46849 * 300.00482 * 9 7 5 13 13 C 1.34783 * 119.99570 * 83.87097 * 4 3 2 14 14 O 1.21292 * 119.99412 * 179.97438 * 13 4 3 15 15 C 1.50696 * 120.00235 * 0.02562 * 13 4 3 16 16 C 1.52999 * 109.47127 * 180.02562 * 15 13 4 17 17 C 1.50702 * 109.47084 * 179.97438 * 16 15 13 18 18 C 1.38289 * 119.97088 * 270.01776 * 17 16 15 19 19 C 1.38241 * 120.10944 * 179.97438 * 18 17 16 20 20 C 1.38168 * 120.05736 * 359.97438 * 19 18 17 21 21 C 1.38712 * 119.94337 * 0.04027 * 20 19 18 22 22 O 1.35896 * 120.05202 * 180.02562 * 21 20 19 23 23 C 1.42898 * 117.00679 * 5.25914 * 22 21 20 24 24 C 1.54266 * 110.03296 * 273.00199 * 23 22 21 25 25 C 1.54891 * 104.19532 * 217.10187 * 24 23 22 26 26 C 1.54889 * 102.75039 * 37.94040 * 25 24 23 27 27 C 1.53872 * 110.03790 * 155.83240 * 23 22 21 28 28 C 1.38120 * 119.97240 * 89.99385 * 17 16 15 29 29 H 1.09003 * 109.46876 * 33.65280 * 3 2 1 30 30 H 1.09003 * 109.47023 * 273.65849 * 3 2 1 31 31 H 0.96998 * 119.99576 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47372 * 59.99493 * 15 13 4 33 33 H 1.09008 * 109.46839 * 299.99510 * 15 13 4 34 34 H 1.08998 * 109.47513 * 59.99452 * 16 15 13 35 35 H 1.09000 * 109.46984 * 299.99316 * 16 15 13 36 36 H 1.07998 * 119.94208 * 359.95436 * 18 17 16 37 37 H 1.08003 * 119.97123 * 179.97438 * 19 18 17 38 38 H 1.08002 * 120.02674 * 179.97438 * 20 19 18 39 39 H 1.09007 * 110.01484 * 34.43932 * 23 22 21 40 40 H 1.08993 * 110.48545 * 335.78129 * 24 23 22 41 41 H 1.08997 * 110.48659 * 98.42326 * 24 23 22 42 42 H 1.09003 * 110.75539 * 279.62512 * 25 24 23 43 43 H 1.09001 * 110.75321 * 156.25943 * 25 24 23 44 44 H 1.08997 * 110.48822 * 203.37858 * 26 25 24 45 45 H 1.09001 * 110.59497 * 80.78981 * 26 25 24 46 46 H 1.08998 * 110.03594 * 238.57251 * 27 23 22 47 47 H 1.09005 * 110.03038 * 359.95131 * 27 23 22 48 48 H 1.07997 * 120.03003 * 359.75368 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0959 1.2386 -0.6130 5 6 3.4438 1.2562 -1.9388 6 1 4.0828 2.0395 -2.3191 7 6 2.9747 0.2662 -2.7935 8 7 1.9214 -0.4452 -2.4594 9 14 3.8410 -0.0536 -4.4173 10 1 5.2507 -0.4419 -4.1582 11 1 3.1493 -1.1514 -5.1395 12 1 3.8112 1.1788 -5.2453 13 6 3.2025 2.3602 0.1267 14 8 3.6068 3.3851 -0.3807 15 6 2.8205 2.3408 1.5843 16 6 3.0335 3.7313 2.1860 17 6 2.6509 3.7120 3.6435 18 6 1.3521 4.0007 4.0207 19 6 0.9979 3.9833 5.3569 20 6 1.9410 3.6767 6.3189 21 6 3.2445 3.3870 5.9431 22 8 4.1738 3.0847 6.8875 23 6 3.7151 2.9700 8.2360 24 6 3.7252 4.3541 8.9171 25 6 4.1661 4.0581 10.3722 26 6 5.2295 2.9471 10.1879 27 6 4.6714 2.0755 9.0439 28 6 3.5975 3.4054 4.6014 29 1 2.9718 -0.8547 -0.5695 30 1 2.9714 -0.0648 1.0256 31 1 1.5941 -1.1365 -3.0559 32 1 3.4407 1.6168 2.1129 33 1 1.7716 2.0601 1.6813 34 1 2.4130 4.4549 1.6574 35 1 4.0821 4.0124 2.0890 36 1 0.6135 4.2405 3.2702 37 1 -0.0170 4.2095 5.6490 38 1 1.6638 3.6636 7.3627 39 1 2.7085 2.5518 8.2533 40 1 4.4413 5.0145 8.4284 41 1 2.7279 4.7937 8.9027 42 1 3.3260 3.6944 10.9640 43 1 4.6076 4.9435 10.8296 44 1 5.3300 2.3600 11.1007 45 1 6.1897 3.3785 9.9052 46 1 4.1290 1.2236 9.4541 47 1 5.4851 1.7281 8.4072 48 1 4.6106 3.1758 4.3060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067922880.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:59 Heat of formation + Delta-G solvation = -28.773140 kcal Electronic energy + Delta-G solvation = -28716.086414 eV Core-core repulsion = 24736.040805 eV Total energy + Delta-G solvation = -3980.045609 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.52715 -39.03601 -38.37589 -36.48596 -35.78610 -34.38059 -33.36162 -31.82691 -30.49320 -29.46835 -28.97006 -28.10172 -27.40062 -25.46793 -23.67081 -22.53699 -21.72493 -21.13418 -19.95047 -18.99065 -18.14044 -17.86745 -16.52817 -16.46010 -16.22339 -15.99751 -15.55521 -15.43019 -14.76517 -14.72071 -14.26701 -14.20948 -13.85921 -13.77759 -13.36114 -13.15298 -12.96504 -12.80892 -12.51906 -12.33111 -12.14444 -11.89465 -11.68718 -11.56709 -11.54245 -11.47010 -11.44773 -11.29860 -11.12884 -11.08709 -11.05936 -10.74881 -10.68977 -10.59686 -10.48284 -10.41225 -10.25874 -9.23791 -8.83905 -8.51812 -8.15525 -8.01404 -6.47994 -3.99508 1.34310 1.48285 3.05224 3.13676 3.22725 3.25174 3.58053 3.76427 3.84031 4.00834 4.10814 4.13657 4.15463 4.47461 4.68833 4.75558 4.85035 4.90217 4.95613 5.01256 5.05250 5.14794 5.16314 5.21652 5.25839 5.32698 5.40726 5.43955 5.47962 5.51930 5.55896 5.61483 5.67960 5.74234 5.77550 5.84254 5.89391 5.99345 6.04830 6.19804 6.30213 6.31428 6.46668 6.52491 6.53897 6.76937 6.84083 7.41427 7.48445 7.93049 8.30110 8.76575 9.02239 9.21707 9.76362 10.58131 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.019762 B = 0.002057 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.495471 B =13608.905544 C =13778.197334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.247 3.753 3 C 0.222 3.778 4 N -0.445 5.445 5 C -0.313 4.313 6 H 0.107 0.893 7 C 0.031 3.969 8 N -0.880 5.880 9 Si 0.928 3.072 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.457 3.543 14 O -0.574 6.574 15 C -0.129 4.129 16 C -0.063 4.063 17 C -0.033 4.033 18 C -0.153 4.153 19 C -0.080 4.080 20 C -0.219 4.219 21 C 0.129 3.871 22 O -0.309 6.309 23 C 0.080 3.920 24 C -0.148 4.148 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.123 4.123 28 C -0.149 4.149 29 H 0.126 0.874 30 H 0.084 0.916 31 H 0.273 0.727 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.082 0.918 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.223 3.666 24.374 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.071 4.071 3 C 0.094 3.906 4 N -0.165 5.165 5 C -0.440 4.440 6 H 0.125 0.875 7 C -0.173 4.173 8 N -0.519 5.519 9 Si 0.755 3.245 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.246 3.754 14 O -0.457 6.457 15 C -0.170 4.170 16 C -0.101 4.101 17 C -0.033 4.033 18 C -0.171 4.171 19 C -0.098 4.098 20 C -0.237 4.237 21 C 0.084 3.916 22 O -0.223 6.223 23 C 0.023 3.977 24 C -0.186 4.186 25 C -0.161 4.161 26 C -0.161 4.161 27 C -0.160 4.160 28 C -0.168 4.168 29 H 0.144 0.856 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.095 0.905 47 H 0.101 0.899 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.859 3.976 23.986 24.481 hybrid contribution 0.266 -0.390 -0.834 0.959 sum 3.125 3.586 23.152 23.635 Atomic orbital electron populations 1.80887 1.13622 1.08713 1.12214 1.29312 0.95378 0.92455 0.89982 1.18717 0.81614 0.92173 0.98071 1.43629 1.56744 1.06259 1.09912 1.19661 1.28565 1.12796 0.82956 0.87534 1.25295 0.94956 0.97293 0.99728 1.69825 1.19789 1.23354 1.38922 0.85952 0.79331 0.78168 0.81052 1.19713 1.21061 1.19847 1.20171 0.83555 0.83489 0.88192 1.90541 1.50259 1.31031 1.73820 1.21588 1.02681 0.97908 0.94780 1.20341 1.03358 0.97255 0.89119 1.19869 0.92808 0.95028 0.95605 1.21041 0.96247 1.03824 0.96033 1.20896 0.98717 0.97462 0.92716 1.21175 0.93270 1.09229 1.00066 1.18953 0.88026 0.95637 0.88964 1.86150 1.35021 1.85004 1.16140 1.23133 0.98624 0.96078 0.79825 1.22953 1.02423 0.97077 0.96151 1.22448 0.98780 0.98914 0.95996 1.22349 0.98857 0.96888 0.97993 1.22215 0.99538 0.97676 0.96571 1.20347 1.00858 1.06356 0.89248 0.85606 0.89856 0.91611 0.89865 0.90215 0.90104 0.90020 0.85840 0.86085 0.85881 0.90608 0.90139 0.91076 0.91249 0.91094 0.91236 0.91157 0.90520 0.89930 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.30 18.54 42.15 0.78 -10.52 16 2 C 0.25 5.46 12.87 -20.76 -0.27 5.20 16 3 C 0.22 4.39 4.91 -6.83 -0.03 4.36 16 4 N -0.44 -10.33 2.60 -117.93 -0.31 -10.64 16 5 C -0.31 -8.03 9.30 -14.94 -0.14 -8.17 16 6 H 0.11 2.88 7.40 -52.48 -0.39 2.49 16 7 C 0.03 0.76 4.90 -17.47 -0.09 0.67 16 8 N -0.88 -22.28 9.45 55.50 0.52 -21.76 16 9 Si 0.93 19.71 29.60 -169.99 -5.03 14.68 16 10 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 11 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 13 C 0.46 10.20 7.56 -10.98 -0.08 10.12 16 14 O -0.57 -14.75 15.65 5.55 0.09 -14.66 16 15 C -0.13 -2.20 4.29 -27.89 -0.12 -2.32 16 16 C -0.06 -0.99 4.63 -27.88 -0.13 -1.12 16 17 C -0.03 -0.46 5.13 -104.65 -0.54 -0.99 16 18 C -0.15 -2.00 9.70 -39.56 -0.38 -2.39 16 19 C -0.08 -0.92 10.04 -39.61 -0.40 -1.32 16 20 C -0.22 -2.46 8.79 -39.43 -0.35 -2.81 16 21 C 0.13 1.62 6.63 -39.22 -0.26 1.36 16 22 O -0.31 -3.62 9.70 -19.41 -0.19 -3.80 16 23 C 0.08 0.69 2.80 -25.61 -0.07 0.62 16 24 C -0.15 -1.11 6.14 -25.07 -0.15 -1.26 16 25 C -0.12 -0.71 6.91 -24.74 -0.17 -0.88 16 26 C -0.12 -0.73 6.83 -25.07 -0.17 -0.90 16 27 C -0.12 -0.87 6.61 -25.61 -0.17 -1.04 16 28 C -0.15 -2.00 9.64 -39.44 -0.38 -2.38 16 29 H 0.13 2.55 6.51 -51.93 -0.34 2.21 16 30 H 0.08 1.27 6.70 -51.93 -0.35 0.92 16 31 H 0.27 6.74 8.31 -40.82 -0.34 6.41 16 32 H 0.08 1.22 7.42 -51.93 -0.39 0.83 16 33 H 0.08 1.37 7.49 -51.92 -0.39 0.98 16 34 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 35 H 0.08 1.29 8.04 -51.93 -0.42 0.87 16 36 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 37 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 38 H 0.12 1.12 5.39 -52.49 -0.28 0.84 16 39 H 0.08 0.62 6.30 -51.93 -0.33 0.29 16 40 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 41 H 0.07 0.49 7.57 -51.93 -0.39 0.10 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.08 0.65 7.96 -51.93 -0.41 0.24 16 48 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 394.61 15.07 5.95 5.95 Total: -1.00 -31.06 394.61 -9.12 -40.18 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.04 Total: 3.84 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -3.90 Total: -3.26 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 1.00 Total: -42.92 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.10 Total: -18.47 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.06 -9.12 -40.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067922880.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.406 kcal (2) G-P(sol) polarization free energy of solvation -31.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds